Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: LOC100291344 Sequence: fasta or formatted (115aa) NCBI GI: 239748250
Description:

PREDICTED: hypothetical protein XP_002346622

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.7         10           3
 C cysteine            4.3          5           1
 D aspartate           1.7          2           1
 E glutamate           7.0          8           1
 F phenylalanine       4.3          5           1
 G glycine             7.0          8           2
 H histidine           0.9          1           1
 I isoleucine          1.7          2           1
 K lysine              2.6          3           1
 L leucine             9.6         11           1
 M methionine          2.6          3           1
 N asparagine          0.9          1           1
 P proline            13.0         15           2
 Q glutamine           8.7         10           2
 R arginine            7.8          9           1
 S serine              7.0          8           1
 T threonine           4.3          5           1
 V valine              7.0          8           1
 W tryptophan          0.9          1           1
 Y tyrosine            0.0          0           0
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002346622 
LOC100293131          1.000   PREDICTED: hypothetical protein 
LOC100289326          1.000   PREDICTED: hypothetical protein XP_002342416 
TM7SF2                0.019   transmembrane 7 superfamily member 2 
PWWP2B                0.019   PWWP domain containing 2 isoform 1 
DMRTA1                0.019   DMRT-like family A1 
PWWP2B                0.019   PWWP domain containing 2 isoform 2 
TENC1                 0.014   tensin like C1 domain containing phosphatase isoform...
TENC1                 0.014   tensin like C1 domain containing phosphatase isoform...
TENC1                 0.014   tensin like C1 domain containing phosphatase isoform...
DKFZP564O0823         0.014   DKFZP564O0823 protein 
SLC45A1               0.014   DNB5 
LOC389333             0.009   hypothetical protein LOC389333 
LOC100289830          0.009   PREDICTED: hypothetical protein XP_002347519 
MICAL3                0.009   microtubule associated monoxygenase, calponin and L...
AIPL1                 0.009   aryl hydrocarbon receptor interacting protein-like 1...
AIPL1                 0.009   aryl hydrocarbon receptor interacting protein-like 1...
AIPL1                 0.009   aryl hydrocarbon receptor interacting protein-like 1...
C15orf39              0.009   hypothetical protein LOC56905 
LOC388199             0.009   PREDICTED: hypothetical protein LOC388199 
PHC2                  0.009   polyhomeotic-like 2 isoform a 
LOC388199             0.009   hypothetical protein LOC388199 
COL6A2                0.005   alpha 2 type VI collagen isoform 2C2a precursor [Ho...
NAV2                  0.005   neuron navigator 2 isoform 3 
NAV2                  0.005   neuron navigator 2 isoform 1 
NAV2                  0.005   neuron navigator 2 isoform 2 
CHRNA7                0.005   cholinergic receptor, nicotinic, alpha 7 precursor [H...
LOC646396             0.005   PREDICTED: similar to hCG2042704 
TTC34                 0.005   PREDICTED: tetratricopeptide repeat domain 34 [Homo...
LOC388079             0.005   PREDICTED: similar to hCG2042704 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press