Guide to the Human Genome
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Name: TM7SF2 Sequence: fasta or formatted (418aa) NCBI GI: 117414150
Description:

transmembrane 7 superfamily member 2

Referenced in:

Cholesterol Biosynthesis
Nucleus and Nucleolus

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            10.8         45           3
 C cysteine            1.4          6           1
 D aspartate           2.4         10           1
 E glutamate           3.6         15           2
 F phenylalanine       5.5         23           2
 G glycine             8.6         36           2
 H histidine           1.9          8           2
 I isoleucine          3.3         14           1
 K lysine              2.4         10           1
 L leucine            18.7         78           5
 M methionine          3.3         14           1
 N asparagine          2.6         11           1
 P proline             7.7         32           2
 Q glutamine           3.1         13           1
 R arginine            5.3         22           2
 S serine              4.3         18           1
 T threonine           3.6         15           2
 V valine              4.5         19           1
 W tryptophan          2.6         11           2
 Y tyrosine            4.3         18           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   transmembrane 7 superfamily member 2 
LBR                   0.567   lamin B receptor 
LBR                   0.567   lamin B receptor 
DHCR7                 0.284   7-dehydrocholesterol reductase 
VGLL2                 0.011   vestigial-like 2 isoform 1 
LOC283104             0.010   PREDICTED: hypothetical protein 
LOC283104             0.010   PREDICTED: hypothetical protein 
LOC283104             0.010   PREDICTED: hypothetical protein 
BRI3BP                0.008   BRI3-binding protein 
KIT                   0.007   v-kit Hardy-Zuckerman 4 feline sarcoma viral oncoge...
KIT                   0.007   v-kit Hardy-Zuckerman 4 feline sarcoma viral oncogene...
ICMT                  0.007   isoprenylcysteine carboxyl methyltransferase 
KCNK6                 0.006   potassium channel, subfamily K, member 6 
PVRIG                 0.006   poliovirus receptor related immunoglobulin domain co...
SOX21                 0.005   SRY-box 21 
MRGPRX2               0.005   MAS-related GPR, member X2 
LOC100293131          0.005   PREDICTED: hypothetical protein 
LOC100291344          0.005   PREDICTED: hypothetical protein XP_002346622 
LOC100289326          0.005   PREDICTED: hypothetical protein XP_002342416 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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