Guide to the Human Genome
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Search of human proteins with 239748186

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|239748186 PREDICTED: similar to CG5323 [Homo sapiens]
         (135 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|239748186 PREDICTED: similar to CG5323 [Homo sapiens]              273   3e-74
gi|239742080 PREDICTED: hypothetical protein XP_002342431 [Homo ...   273   3e-74
gi|189491675 hypothetical protein LOC84908 [Homo sapiens]             235   9e-63
gi|170295795 hypothetical protein LOC387071 [Homo sapiens]            218   1e-57
gi|29789367 forkhead box P4 isoform 2 [Homo sapiens]                   32   0.20 
gi|60498989 forkhead box P4 isoform 1 [Homo sapiens]                   32   0.20 
gi|110611218 ribosome binding protein 1 [Homo sapiens]                 30   0.45 
gi|110611220 ribosome binding protein 1 [Homo sapiens]                 30   0.45 
gi|153792694 baculoviral IAP repeat-containing 6 [Homo sapiens]        30   0.78 
gi|115496169 myosin, heavy chain 7, cardiac muscle, beta [Homo s...    29   1.0  
gi|210147558 hypothetical protein LOC202051 [Homo sapiens]             28   1.7  
gi|32996737 lin-9 homolog [Homo sapiens]                               28   2.3  
gi|6912708 translocase of inner mitochondrial membrane 10 homolo...    28   2.3  
gi|114842389 myosin, heavy polypeptide 7B, cardiac muscle, beta ...    28   2.9  
gi|60498992 forkhead box P4 isoform 3 [Homo sapiens]                   28   2.9  
gi|122937480 Ras association (RalGDS/AF-6) domain family (N-term...    28   2.9  
gi|161016765 tudor domain containing 12 [Homo sapiens]                 28   2.9  
gi|197209974 coiled-coil and C2 domain containing 2A isoform a [...    27   3.8  
gi|197209817 coiled-coil and C2 domain containing 2A isoform b [...    27   3.8  
gi|7661858 Rho GTPase activating protein 11A isoform 1 [Homo sap...    27   3.8  
gi|31657114 armadillo repeat containing 4 [Homo sapiens]               27   3.8  
gi|122937396 coiled-coil domain containing 150 [Homo sapiens]          27   3.8  
gi|71361682 nuclear mitotic apparatus protein 1 [Homo sapiens]         27   5.0  
gi|26190614 rhotekin 2 [Homo sapiens]                                  27   5.0  
gi|21536378 ATP-binding cassette, sub-family B (MDR/TAP), member...    27   6.6  
gi|23097308 spectrin repeat containing, nuclear envelope 1 isofo...    27   6.6  
gi|154277116 spectrin repeat containing, nuclear envelope 1 isof...    27   6.6  
gi|45433501 elastin microfibril interfacer 3 [Homo sapiens]            27   6.6  
gi|122937217 zinc finger protein 433 [Homo sapiens]                    27   6.6  
gi|31563507 GRIP and coiled-coil domain-containing 2 [Homo sapiens]    26   8.6  

>gi|239748186 PREDICTED: similar to CG5323 [Homo sapiens]
          Length = 135

 Score =  273 bits (698), Expect = 3e-74
 Identities = 135/135 (100%), Positives = 135/135 (100%)

Query: 1   MTKIKVQKVVESMVKSLERENIRKMQGLMFRCSTSCCEDSQASLQQVHQCIKHCHVLLAQ 60
           MTKIKVQKVVESMVKSLERENIRKMQGLMFRCSTSCCEDSQASLQQVHQCIKHCHVLLAQ
Sbjct: 1   MTKIKVQKVVESMVKSLERENIRKMQGLMFRCSTSCCEDSQASLQQVHQCIKHCHVLLAQ 60

Query: 61  AQALVTSELEKFQDHLAQCTTQCNNKAKDSIAAGSKELQVKQQLDGCVTKCVDDHMHLIP 120
           AQALVTSELEKFQDHLAQCTTQCNNKAKDSIAAGSKELQVKQQLDGCVTKCVDDHMHLIP
Sbjct: 61  AQALVTSELEKFQDHLAQCTTQCNNKAKDSIAAGSKELQVKQQLDGCVTKCVDDHMHLIP 120

Query: 121 TMTKKMKEALLAIGK 135
           TMTKKMKEALLAIGK
Sbjct: 121 TMTKKMKEALLAIGK 135


>gi|239742080 PREDICTED: hypothetical protein XP_002342431 [Homo
           sapiens]
          Length = 135

 Score =  273 bits (698), Expect = 3e-74
 Identities = 135/135 (100%), Positives = 135/135 (100%)

Query: 1   MTKIKVQKVVESMVKSLERENIRKMQGLMFRCSTSCCEDSQASLQQVHQCIKHCHVLLAQ 60
           MTKIKVQKVVESMVKSLERENIRKMQGLMFRCSTSCCEDSQASLQQVHQCIKHCHVLLAQ
Sbjct: 1   MTKIKVQKVVESMVKSLERENIRKMQGLMFRCSTSCCEDSQASLQQVHQCIKHCHVLLAQ 60

Query: 61  AQALVTSELEKFQDHLAQCTTQCNNKAKDSIAAGSKELQVKQQLDGCVTKCVDDHMHLIP 120
           AQALVTSELEKFQDHLAQCTTQCNNKAKDSIAAGSKELQVKQQLDGCVTKCVDDHMHLIP
Sbjct: 61  AQALVTSELEKFQDHLAQCTTQCNNKAKDSIAAGSKELQVKQQLDGCVTKCVDDHMHLIP 120

Query: 121 TMTKKMKEALLAIGK 135
           TMTKKMKEALLAIGK
Sbjct: 121 TMTKKMKEALLAIGK 135


>gi|189491675 hypothetical protein LOC84908 [Homo sapiens]
          Length = 138

 Score =  235 bits (599), Expect = 9e-63
 Identities = 114/135 (84%), Positives = 125/135 (92%)

Query: 1   MTKIKVQKVVESMVKSLERENIRKMQGLMFRCSTSCCEDSQASLQQVHQCIKHCHVLLAQ 60
           + +++VQ+ VESMVKSLERENIRKMQGLMFRCS SCCEDSQAS++QVHQCI+ CHV LAQ
Sbjct: 4   LQQLRVQEAVESMVKSLERENIRKMQGLMFRCSASCCEDSQASMKQVHQCIERCHVPLAQ 63

Query: 61  AQALVTSELEKFQDHLAQCTTQCNNKAKDSIAAGSKELQVKQQLDGCVTKCVDDHMHLIP 120
           AQALVTSELEKFQD LA+CT  CN+KAKDSI AGSKELQVKQQLD CVTKCVDDHMHLIP
Sbjct: 64  AQALVTSELEKFQDRLARCTMHCNDKAKDSIDAGSKELQVKQQLDSCVTKCVDDHMHLIP 123

Query: 121 TMTKKMKEALLAIGK 135
           TMTKKMKEALL+IGK
Sbjct: 124 TMTKKMKEALLSIGK 138


>gi|170295795 hypothetical protein LOC387071 [Homo sapiens]
          Length = 138

 Score =  218 bits (555), Expect = 1e-57
 Identities = 108/135 (80%), Positives = 120/135 (88%)

Query: 1   MTKIKVQKVVESMVKSLERENIRKMQGLMFRCSTSCCEDSQASLQQVHQCIKHCHVLLAQ 60
           + +++VQ+VV+SMVKSLERENI K QGLMF CS SCCEDSQA  QQVHQCI+ C V LAQ
Sbjct: 4   LQQLRVQEVVDSMVKSLERENIWKTQGLMFWCSASCCEDSQAFTQQVHQCIECCPVPLAQ 63

Query: 61  AQALVTSELEKFQDHLAQCTTQCNNKAKDSIAAGSKELQVKQQLDGCVTKCVDDHMHLIP 120
            QALVTSELEKFQDHLA+CT  CN+KAKDSI AGSKELQVKQQLDGCVTKCVDDH+HLI 
Sbjct: 64  VQALVTSELEKFQDHLARCTMHCNDKAKDSIDAGSKELQVKQQLDGCVTKCVDDHIHLIS 123

Query: 121 TMTKKMKEALLAIGK 135
           TMTKKMKEA+L+IGK
Sbjct: 124 TMTKKMKEAVLSIGK 138


>gi|29789367 forkhead box P4 isoform 2 [Homo sapiens]
          Length = 667

 Score = 31.6 bits (70), Expect = 0.20
 Identities = 23/68 (33%), Positives = 34/68 (50%), Gaps = 8/68 (11%)

Query: 45  QQVHQCIK--HCHVLLAQAQALVTSELEKF------QDHLAQCTTQCNNKAKDSIAAGSK 96
           QQ+ Q +       LL Q QAL+  +L+++      Q HL   T Q   K +   A G+K
Sbjct: 116 QQMQQILSPPQLQALLQQQQALMLQQLQEYYKKQQEQLHLQLLTQQQAGKPQPKEALGNK 175

Query: 97  ELQVKQQL 104
           +L  +QQL
Sbjct: 176 QLAFQQQL 183


>gi|60498989 forkhead box P4 isoform 1 [Homo sapiens]
          Length = 680

 Score = 31.6 bits (70), Expect = 0.20
 Identities = 23/68 (33%), Positives = 34/68 (50%), Gaps = 8/68 (11%)

Query: 45  QQVHQCIK--HCHVLLAQAQALVTSELEKF------QDHLAQCTTQCNNKAKDSIAAGSK 96
           QQ+ Q +       LL Q QAL+  +L+++      Q HL   T Q   K +   A G+K
Sbjct: 116 QQMQQILSPPQLQALLQQQQALMLQQLQEYYKKQQEQLHLQLLTQQQAGKPQPKEALGNK 175

Query: 97  ELQVKQQL 104
           +L  +QQL
Sbjct: 176 QLAFQQQL 183


>gi|110611218 ribosome binding protein 1 [Homo sapiens]
          Length = 977

 Score = 30.4 bits (67), Expect = 0.45
 Identities = 28/129 (21%), Positives = 56/129 (43%), Gaps = 17/129 (13%)

Query: 11  ESMVKSLERENIRKMQGLMFRCSTSCCEDSQASLQQVHQCIKHCHVLLAQAQALV----- 65
           E M++ L++    + Q  ++R      E+    LQ+    +KH   ++ + +  +     
Sbjct: 706 EGMLRDLQKSVEEEEQ--VWRAKVGAAEEE---LQKSRVTVKHLEEIVEKLKGELESSDQ 760

Query: 66  ----TSELE-KFQDHLAQCTTQCNNKAKDSIAAGSKELQVKQQLDGCVTKC--VDDHMHL 118
               TS LE + + H+A  + +C N AK+        L+ + QLD   ++     D + L
Sbjct: 761 VREHTSHLEAELEKHMAAASAECQNYAKEVAGLRQLLLESQSQLDAAKSEAQKQSDELAL 820

Query: 119 IPTMTKKMK 127
           +     +MK
Sbjct: 821 VRQQLSEMK 829


>gi|110611220 ribosome binding protein 1 [Homo sapiens]
          Length = 977

 Score = 30.4 bits (67), Expect = 0.45
 Identities = 28/129 (21%), Positives = 56/129 (43%), Gaps = 17/129 (13%)

Query: 11  ESMVKSLERENIRKMQGLMFRCSTSCCEDSQASLQQVHQCIKHCHVLLAQAQALV----- 65
           E M++ L++    + Q  ++R      E+    LQ+    +KH   ++ + +  +     
Sbjct: 706 EGMLRDLQKSVEEEEQ--VWRAKVGAAEEE---LQKSRVTVKHLEEIVEKLKGELESSDQ 760

Query: 66  ----TSELE-KFQDHLAQCTTQCNNKAKDSIAAGSKELQVKQQLDGCVTKC--VDDHMHL 118
               TS LE + + H+A  + +C N AK+        L+ + QLD   ++     D + L
Sbjct: 761 VREHTSHLEAELEKHMAAASAECQNYAKEVAGLRQLLLESQSQLDAAKSEAQKQSDELAL 820

Query: 119 IPTMTKKMK 127
           +     +MK
Sbjct: 821 VRQQLSEMK 829


>gi|153792694 baculoviral IAP repeat-containing 6 [Homo sapiens]
          Length = 4857

 Score = 29.6 bits (65), Expect = 0.78
 Identities = 19/75 (25%), Positives = 28/75 (37%)

Query: 32   CSTSCCEDSQASLQQVHQCIKHCHVLLAQAQALVTSELEKFQDHLAQCTTQCNNKAKDSI 91
            CST+C     A  +Q+   +     LL     L +S  +     L    + C N    SI
Sbjct: 1466 CSTACASLLTAVSRQLQDRLTPMEALLQTRYGLYSSPFDPVLFDLEMSGSSCKNVYNSSI 1525

Query: 92   AAGSKELQVKQQLDG 106
               S E+ +   L G
Sbjct: 1526 GVQSDEIDLSDVLSG 1540


>gi|115496169 myosin, heavy chain 7, cardiac muscle, beta [Homo
           sapiens]
          Length = 1935

 Score = 29.3 bits (64), Expect = 1.0
 Identities = 22/102 (21%), Positives = 49/102 (48%), Gaps = 4/102 (3%)

Query: 4   IKVQKVVESMVKSLERENIRKMQGLMFRCSTSCCEDSQASLQQVHQCIKHCHVLLAQAQA 63
           +K+   ++ ++KS ERE         F       E S+A  +++ + +    V L Q + 
Sbjct: 830 MKLYFKIKPLLKSAEREKEMASMKEEFTRLKEALEKSEARRKELEEKM----VSLLQEKN 885

Query: 64  LVTSELEKFQDHLAQCTTQCNNKAKDSIAAGSKELQVKQQLD 105
            +  +++  QD+LA    +C+   K+ I   +K  ++ ++L+
Sbjct: 886 DLQLQVQAEQDNLADAEERCDQLIKNKIQLEAKVKEMNERLE 927


>gi|210147558 hypothetical protein LOC202051 [Homo sapiens]
          Length = 205

 Score = 28.5 bits (62), Expect = 1.7
 Identities = 22/87 (25%), Positives = 35/87 (40%), Gaps = 7/87 (8%)

Query: 40  SQASLQQVHQCIKHCHVLLAQAQALVTSELEKFQDHLAQCTTQCNNKAKDSIA------- 92
           S+   Q V + +       A+ + L+  E EK Q  L +         K+ +A       
Sbjct: 49  SKEEFQAVEKKLVEEKAAHAKTKVLLAKEEEKLQFALGEVEVLSKQLEKEKLAFEKALSS 108

Query: 93  AGSKELQVKQQLDGCVTKCVDDHMHLI 119
             SK LQ   + D  +TKC +   H+I
Sbjct: 109 VKSKVLQESSKKDQLITKCNEIESHII 135


>gi|32996737 lin-9 homolog [Homo sapiens]
          Length = 558

 Score = 28.1 bits (61), Expect = 2.3
 Identities = 17/60 (28%), Positives = 32/60 (53%), Gaps = 4/60 (6%)

Query: 17  LERENIRKMQGLMFRCSTSCCEDSQASLQQVHQCIKHCHVLLAQAQALVTSELEKFQDHL 76
           +E   IR++ G   RCS++  E+ +++L+Q  Q I+    LL Q +    S+ +   D +
Sbjct: 177 VEWGKIRRLMGKPRRCSSAFFEEERSALKQKRQKIR----LLQQRKVADVSQFKDLPDEI 232


>gi|6912708 translocase of inner mitochondrial membrane 10 homolog
           [Homo sapiens]
          Length = 90

 Score = 28.1 bits (61), Expect = 2.3
 Identities = 18/70 (25%), Positives = 33/70 (47%), Gaps = 4/70 (5%)

Query: 60  QAQALVTS-ELEKFQDHLAQCTTQCNNKAKDSIAAGSKELQVKQQLDGCVTKCVDDHMHL 118
           +AQ L    E+E   D   + T+ C+ K    +    KE ++ +    C+ +CV  ++ +
Sbjct: 5   RAQQLAAELEVEMMADMYNRMTSACHRKC---VPPHYKEAELSKGESVCLDRCVSKYLDI 61

Query: 119 IPTMTKKMKE 128
              M KK+ E
Sbjct: 62  HERMGKKLTE 71


>gi|114842389 myosin, heavy polypeptide 7B, cardiac muscle, beta
           [Homo sapiens]
          Length = 1983

 Score = 27.7 bits (60), Expect = 2.9
 Identities = 14/64 (21%), Positives = 32/64 (50%)

Query: 42  ASLQQVHQCIKHCHVLLAQAQALVTSELEKFQDHLAQCTTQCNNKAKDSIAAGSKELQVK 101
           A+ +   Q ++  HV + Q +  +  +L+  QD+LA    +C+   K  +    K  ++ 
Sbjct: 913 AAAEAKRQELEETHVSITQEKNDLALQLQAEQDNLADAEERCHLLIKSKVQLEGKVKELS 972

Query: 102 QQLD 105
           ++L+
Sbjct: 973 ERLE 976


>gi|60498992 forkhead box P4 isoform 3 [Homo sapiens]
          Length = 678

 Score = 27.7 bits (60), Expect = 2.9
 Identities = 22/66 (33%), Positives = 32/66 (48%), Gaps = 6/66 (9%)

Query: 45  QQVHQCIK--HCHVLLAQAQALVTSE----LEKFQDHLAQCTTQCNNKAKDSIAAGSKEL 98
           QQ+ Q +       LL Q QAL+  +     ++ Q HL   T Q   K +   A G+K+L
Sbjct: 116 QQMQQILSPPQLQALLQQQQALMLQQEYYKKQQEQLHLQLLTQQQAGKPQPKEALGNKQL 175

Query: 99  QVKQQL 104
             +QQL
Sbjct: 176 AFQQQL 181


>gi|122937480 Ras association (RalGDS/AF-6) domain family
           (N-terminal) member 10 [Homo sapiens]
          Length = 615

 Score = 27.7 bits (60), Expect = 2.9
 Identities = 26/90 (28%), Positives = 40/90 (44%), Gaps = 17/90 (18%)

Query: 1   MTKIKVQKVVESMVKSLERENIRKMQGLMFRCST------SCCEDS-----QASLQQ--- 46
           MT+ K ++VV    + L + N R+ Q     CS+      S C  S      AS+++   
Sbjct: 276 MTQEKQRRVVRKAFRKLAKLNRRRQQQTPSSCSSTSSSTASSCSSSPRTHESASVERMET 335

Query: 47  -VHQCIKHCHVLLAQAQALVTSELEKFQDH 75
            VH  +   H +  Q Q L   EL++  DH
Sbjct: 336 LVHLVLSQDHTIRQQVQRL--HELDREIDH 363


>gi|161016765 tudor domain containing 12 [Homo sapiens]
          Length = 395

 Score = 27.7 bits (60), Expect = 2.9
 Identities = 15/60 (25%), Positives = 28/60 (46%), Gaps = 3/60 (5%)

Query: 23 RKMQGLMFRCSTSCCEDSQA---SLQQVHQCIKHCHVLLAQAQALVTSELEKFQDHLAQC 79
          +K+   M     S C+D +    +L++   C+ +C  L    +A+V S       +LA+C
Sbjct: 33 QKLNSAMNDFYNSTCQDIEIKPLTLEEGQVCVVYCEELKCWCRAIVKSITSSADQYLAEC 92


>gi|197209974 coiled-coil and C2 domain containing 2A isoform a
           [Homo sapiens]
          Length = 1620

 Score = 27.3 bits (59), Expect = 3.8
 Identities = 20/82 (24%), Positives = 37/82 (45%), Gaps = 2/82 (2%)

Query: 48  HQCIKHCHVLLAQAQALVTSELEKFQDHLAQCTTQCNNKAKDSIAAGSKELQVKQQLDGC 107
           H C    HVL A+   L    L + Q + A+  T      ++++  G    +  Q LD  
Sbjct: 418 HPCFSREHVLAAKLAQLYDQYLARHQRNKAKFLTDKLQALRNAVQTGLDPEKPHQSLD-T 476

Query: 108 VTKCVDDHMHLIPTMTKKMKEA 129
           + K ++++   I   T+K ++A
Sbjct: 477 IQKTINEYKSEI-RQTRKFRDA 497


>gi|197209817 coiled-coil and C2 domain containing 2A isoform b
           [Homo sapiens]
          Length = 1512

 Score = 27.3 bits (59), Expect = 3.8
 Identities = 20/82 (24%), Positives = 37/82 (45%), Gaps = 2/82 (2%)

Query: 48  HQCIKHCHVLLAQAQALVTSELEKFQDHLAQCTTQCNNKAKDSIAAGSKELQVKQQLDGC 107
           H C    HVL A+   L    L + Q + A+  T      ++++  G    +  Q LD  
Sbjct: 369 HPCFSREHVLAAKLAQLYDQYLARHQRNKAKFLTDKLQALRNAVQTGLDPEKPHQSLD-T 427

Query: 108 VTKCVDDHMHLIPTMTKKMKEA 129
           + K ++++   I   T+K ++A
Sbjct: 428 IQKTINEYKSEI-RQTRKFRDA 448


>gi|7661858 Rho GTPase activating protein 11A isoform 1 [Homo
           sapiens]
          Length = 1023

 Score = 27.3 bits (59), Expect = 3.8
 Identities = 17/71 (23%), Positives = 37/71 (52%), Gaps = 5/71 (7%)

Query: 3   KIKVQKVVESMVKSLERENIRKMQGLMFRCSTSCCEDSQASLQQVHQCI-----KHCHVL 57
           +IK Q+  +  + +  +EN   M+G + +C+    +++++S  Q   C+     K   + 
Sbjct: 722 EIKKQQSPKDKLNNKLKENENMMEGNLPKCAAHSKDEARSSFSQQSTCVVTNLSKPRPMR 781

Query: 58  LAQAQALVTSE 68
           +A+ Q+L T E
Sbjct: 782 IAKQQSLETCE 792


>gi|31657114 armadillo repeat containing 4 [Homo sapiens]
          Length = 1044

 Score = 27.3 bits (59), Expect = 3.8
 Identities = 17/56 (30%), Positives = 30/56 (53%), Gaps = 2/56 (3%)

Query: 4   IKVQKVVESMVKSLERENIRKMQGLMFRCSTSCCEDSQA-SLQQVHQCIKHCHVLL 58
           IK ++++E++VK+L  EN  ++Q         C ED +   L ++H  +K    LL
Sbjct: 669 IKAERIIENLVKNLNSEN-EQLQEHCAMAIYQCAEDKETRDLVRLHGGLKPLASLL 723


>gi|122937396 coiled-coil domain containing 150 [Homo sapiens]
          Length = 1101

 Score = 27.3 bits (59), Expect = 3.8
 Identities = 22/66 (33%), Positives = 31/66 (46%), Gaps = 14/66 (21%)

Query: 39  DSQASLQ----QVHQCIKHCHVLLAQAQALVTSELEKFQ----------DHLAQCTTQCN 84
           D QA LQ     + Q  +  ++LL  A A +T+EL+  Q          DHL     QC 
Sbjct: 373 DHQAILQVEQKMMTQTFQEQNLLLDAAHASITNELQTVQNEKTQLQAHLDHLILEHNQCI 432

Query: 85  NKAKDS 90
            KA+D+
Sbjct: 433 QKAQDA 438


>gi|71361682 nuclear mitotic apparatus protein 1 [Homo sapiens]
          Length = 2115

 Score = 26.9 bits (58), Expect = 5.0
 Identities = 27/133 (20%), Positives = 59/133 (44%), Gaps = 13/133 (9%)

Query: 7   QKVVESMVKSLERENIR-KMQGLMFRCSTSC--CEDSQASLQQVHQCIKHCHVLLAQAQA 63
           +K   S ++  E E +R K + L  R   +   C+D +    Q+ + I      L++   
Sbjct: 266 EKQAASPLEPKELEELRDKNESLTMRLHETLKQCQDLKTEKSQMDRKINQ----LSEENG 321

Query: 64  LVTSELEKFQDHLAQCTTQCNNKAKDSIAAG----SKELQVKQQLDGCV--TKCVDDHMH 117
            ++ +L +F  HL Q     N   ++   A      K+ Q++++L   +   KC+++   
Sbjct: 322 DLSFKLREFASHLQQLQDALNELTEEHSKATQEWLEKQAQLEKELSAALQDKKCLEEKNE 381

Query: 118 LIPTMTKKMKEAL 130
           ++     +++E L
Sbjct: 382 ILQGKLSQLEEHL 394


>gi|26190614 rhotekin 2 [Homo sapiens]
          Length = 609

 Score = 26.9 bits (58), Expect = 5.0
 Identities = 21/65 (32%), Positives = 33/65 (50%), Gaps = 7/65 (10%)

Query: 22 IRKMQGLMFRCSTSCCEDSQASLQQVHQCIKHCHVLLAQAQALVTSELEKFQDHLAQCTT 81
          IR  +G+    S S  +D      QV   +K+  V  A+  A  TSEL+K ++ +A  T 
Sbjct: 32 IRMREGIWKLLSLSTQKD------QVLHAVKNLMVCNARLMAY-TSELQKLEEQIANQTG 84

Query: 82 QCNNK 86
          +C+ K
Sbjct: 85 RCDVK 89


>gi|21536378 ATP-binding cassette, sub-family B (MDR/TAP), member 11
           [Homo sapiens]
          Length = 1321

 Score = 26.6 bits (57), Expect = 6.6
 Identities = 16/52 (30%), Positives = 30/52 (57%), Gaps = 1/52 (1%)

Query: 16  SLERENIRKMQGLMFRCSTSCCE-DSQASLQQVHQCIKHCHVLLAQAQALVT 66
           ++ R  IR  + L+   +TS  + +S+A +Q+V   I+H H +++ A  L T
Sbjct: 568 AIARALIRNPKILLLDMATSALDNESEAMVQEVLSKIQHGHTIISVAHRLST 619


>gi|23097308 spectrin repeat containing, nuclear envelope 1 isoform 2
            [Homo sapiens]
          Length = 8749

 Score = 26.6 bits (57), Expect = 6.6
 Identities = 16/68 (23%), Positives = 33/68 (48%), Gaps = 1/68 (1%)

Query: 46   QVHQCIKHCHVLLAQAQALVTSELEKFQDHLAQCTTQCNNKAKDSIAAGSKELQVKQQLD 105
            Q+   IK      A +Q L + +++K    L    T+   K  + + A + +  + ++LD
Sbjct: 5341 QIQDKIKEVEQSKATSQEL-SRQIQKLAKDLTTILTKLKAKTDNVVQAKTDQKVLGEELD 5399

Query: 106  GCVTKCVD 113
            GC +K ++
Sbjct: 5400 GCNSKLME 5407


>gi|154277116 spectrin repeat containing, nuclear envelope 1 isoform 1
            [Homo sapiens]
          Length = 8797

 Score = 26.6 bits (57), Expect = 6.6
 Identities = 16/68 (23%), Positives = 33/68 (48%), Gaps = 1/68 (1%)

Query: 46   QVHQCIKHCHVLLAQAQALVTSELEKFQDHLAQCTTQCNNKAKDSIAAGSKELQVKQQLD 105
            Q+   IK      A +Q L + +++K    L    T+   K  + + A + +  + ++LD
Sbjct: 5412 QIQDKIKEVEQSKATSQEL-SRQIQKLAKDLTTILTKLKAKTDNVVQAKTDQKVLGEELD 5470

Query: 106  GCVTKCVD 113
            GC +K ++
Sbjct: 5471 GCNSKLME 5478


>gi|45433501 elastin microfibril interfacer 3 [Homo sapiens]
          Length = 766

 Score = 26.6 bits (57), Expect = 6.6
 Identities = 14/54 (25%), Positives = 28/54 (51%), Gaps = 6/54 (11%)

Query: 23  RKMQGLMFRCSTSC------CEDSQASLQQVHQCIKHCHVLLAQAQALVTSELE 70
           +K+QG+   C          CE+ QA+ +++HQ +    + L Q  + + S+L+
Sbjct: 321 QKLQGVQSECDLRVQEVRRQCEEGQAASRRLHQSLDGRELALRQELSQLGSQLQ 374


>gi|122937217 zinc finger protein 433 [Homo sapiens]
          Length = 673

 Score = 26.6 bits (57), Expect = 6.6
 Identities = 19/63 (30%), Positives = 31/63 (49%), Gaps = 10/63 (15%)

Query: 27  GLMFRCSTSCCEDSQA-SLQQVHQCIKHCHVLLAQAQALVTSELEKFQDHLAQCTTQCNN 85
           G  F+C +S     +  S ++ ++C KHC  +L        S L  FQ+HL   T + ++
Sbjct: 316 GKAFKCPSSVRRHERTHSRKKPYEC-KHCGKVL--------SYLTSFQNHLGMHTGEISH 366

Query: 86  KAK 88
           K K
Sbjct: 367 KCK 369


>gi|31563507 GRIP and coiled-coil domain-containing 2 [Homo sapiens]
          Length = 1684

 Score = 26.2 bits (56), Expect = 8.6
 Identities = 25/121 (20%), Positives = 55/121 (45%), Gaps = 12/121 (9%)

Query: 11  ESMVKSLERENI---RKMQGLMFRCSTSCCEDSQASLQQVHQCIKHCHVLLAQAQALVTS 67
           +S +++L +E++    K Q ++ + + S C + +  ++++    K            +T 
Sbjct: 19  KSKLETLPKEDLIKFAKKQMMLIQKAKSRCTELEKEIEELRS--KPVTEGTGDIIKALTE 76

Query: 68  ELEKFQDHLAQCTTQCNNKAKDSIAAGSKELQVKQQLDGCVTKCVDDHMHLIPTMTKKMK 127
            L+      A+   QC +  K++I       ++KQ+++  VTK  D H  L  +    +K
Sbjct: 77  RLDALLLEKAETEQQCLSLKKENI-------KMKQEVEDSVTKMGDAHKELEQSHINYVK 129

Query: 128 E 128
           E
Sbjct: 130 E 130


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.320    0.127    0.367 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,227,626
Number of Sequences: 37866
Number of extensions: 156165
Number of successful extensions: 547
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 30
Number of HSP's that attempted gapping in prelim test: 530
Number of HSP's gapped (non-prelim): 43
length of query: 135
length of database: 18,247,518
effective HSP length: 91
effective length of query: 44
effective length of database: 14,801,712
effective search space: 651275328
effective search space used: 651275328
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 56 (26.2 bits)

Search results were obtained with NCBI BLAST and RefSeq entries.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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