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Search of human proteins with 239747526
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239747526 PREDICTED: hypothetical protein XP_002347652 [Homo
sapiens]
(70 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239753018 PREDICTED: hypothetical protein [Homo sapiens] 150 3e-37
gi|239747526 PREDICTED: hypothetical protein XP_002347652 [Homo ... 150 3e-37
gi|239741402 PREDICTED: hypothetical protein XP_002342162 [Homo ... 150 3e-37
gi|157419126 laminin, alpha 4 isoform 2 precursor [Homo sapiens] 30 0.53
gi|157419124 laminin, alpha 4 isoform 1 precursor [Homo sapiens] 30 0.53
gi|157419122 laminin, alpha 4 isoform 2 precursor [Homo sapiens] 30 0.53
gi|226051634 zinc finger protein 414 isoform 1 [Homo sapiens] 29 0.70
gi|226051591 zinc finger protein 414 isoform 2 [Homo sapiens] 29 0.70
gi|4506949 ST6 beta-galactosamide alpha-2,6-sialyltranferase 1 i... 28 1.2
gi|27765093 ST6 beta-galactosamide alpha-2,6-sialyltranferase 1 ... 28 1.2
gi|27765091 ST6 beta-galactosamide alpha-2,6-sialyltranferase 1 ... 28 1.2
gi|239755410 PREDICTED: hypothetical protein [Homo sapiens] 28 1.6
gi|169201378 PREDICTED: hypothetical protein [Homo sapiens] 28 1.6
gi|169188835 PREDICTED: hypothetical protein [Homo sapiens] 28 1.6
gi|119120861 formin-like 3 isoform 2 [Homo sapiens] 28 1.6
gi|119120874 formin-like 3 isoform 1 [Homo sapiens] 28 1.6
gi|45580719 osteoclast-associated receptor isoform 1 [Homo sapiens] 27 4.5
gi|9998946 amiloride-sensitive cation channel 3 isoform b [Homo ... 27 4.5
gi|40807447 papillary renal cell carcinoma translocation-associa... 27 4.5
gi|40807450 papillary renal cell carcinoma translocation-associa... 27 4.5
gi|157168329 formin 1 [Homo sapiens] 26 5.9
gi|149158690 HLA-B associated transcript-2 [Homo sapiens] 26 5.9
gi|168229174 RNA binding motif protein 27 [Homo sapiens] 26 5.9
gi|91176325 bromodomain adjacent to zinc finger domain, 2A [Homo... 26 7.7
gi|154240732 hypothetical protein LOC201243 [Homo sapiens] 26 7.7
gi|122937335 F-box protein 46 [Homo sapiens] 26 7.7
>gi|239753018 PREDICTED: hypothetical protein [Homo sapiens]
Length = 70
Score = 150 bits (378), Expect = 3e-37
Identities = 70/70 (100%), Positives = 70/70 (100%)
Query: 1 MPDRGALRRQLPMVLWHRLAPENPDDLDPAPPPSMLVPRLIPIATVSSCLRHQLPSVVVV 60
MPDRGALRRQLPMVLWHRLAPENPDDLDPAPPPSMLVPRLIPIATVSSCLRHQLPSVVVV
Sbjct: 1 MPDRGALRRQLPMVLWHRLAPENPDDLDPAPPPSMLVPRLIPIATVSSCLRHQLPSVVVV 60
Query: 61 KHSQPNHGIP 70
KHSQPNHGIP
Sbjct: 61 KHSQPNHGIP 70
>gi|239747526 PREDICTED: hypothetical protein XP_002347652 [Homo
sapiens]
Length = 70
Score = 150 bits (378), Expect = 3e-37
Identities = 70/70 (100%), Positives = 70/70 (100%)
Query: 1 MPDRGALRRQLPMVLWHRLAPENPDDLDPAPPPSMLVPRLIPIATVSSCLRHQLPSVVVV 60
MPDRGALRRQLPMVLWHRLAPENPDDLDPAPPPSMLVPRLIPIATVSSCLRHQLPSVVVV
Sbjct: 1 MPDRGALRRQLPMVLWHRLAPENPDDLDPAPPPSMLVPRLIPIATVSSCLRHQLPSVVVV 60
Query: 61 KHSQPNHGIP 70
KHSQPNHGIP
Sbjct: 61 KHSQPNHGIP 70
>gi|239741402 PREDICTED: hypothetical protein XP_002342162 [Homo
sapiens]
Length = 70
Score = 150 bits (378), Expect = 3e-37
Identities = 70/70 (100%), Positives = 70/70 (100%)
Query: 1 MPDRGALRRQLPMVLWHRLAPENPDDLDPAPPPSMLVPRLIPIATVSSCLRHQLPSVVVV 60
MPDRGALRRQLPMVLWHRLAPENPDDLDPAPPPSMLVPRLIPIATVSSCLRHQLPSVVVV
Sbjct: 1 MPDRGALRRQLPMVLWHRLAPENPDDLDPAPPPSMLVPRLIPIATVSSCLRHQLPSVVVV 60
Query: 61 KHSQPNHGIP 70
KHSQPNHGIP
Sbjct: 61 KHSQPNHGIP 70
>gi|157419126 laminin, alpha 4 isoform 2 precursor [Homo sapiens]
Length = 1816
Score = 29.6 bits (65), Expect = 0.53
Identities = 15/43 (34%), Positives = 20/43 (46%), Gaps = 7/43 (16%)
Query: 17 HRLAPENPDDLDPAPP-------PSMLVPRLIPIATVSSCLRH 52
H + P NP +D P S+L PRL P + C+RH
Sbjct: 1746 HVVGPLNPKPIDHREPVFVGGVPESLLTPRLAPSKPFTGCIRH 1788
>gi|157419124 laminin, alpha 4 isoform 1 precursor [Homo sapiens]
Length = 1823
Score = 29.6 bits (65), Expect = 0.53
Identities = 15/43 (34%), Positives = 20/43 (46%), Gaps = 7/43 (16%)
Query: 17 HRLAPENPDDLDPAPP-------PSMLVPRLIPIATVSSCLRH 52
H + P NP +D P S+L PRL P + C+RH
Sbjct: 1753 HVVGPLNPKPIDHREPVFVGGVPESLLTPRLAPSKPFTGCIRH 1795
>gi|157419122 laminin, alpha 4 isoform 2 precursor [Homo sapiens]
Length = 1816
Score = 29.6 bits (65), Expect = 0.53
Identities = 15/43 (34%), Positives = 20/43 (46%), Gaps = 7/43 (16%)
Query: 17 HRLAPENPDDLDPAPP-------PSMLVPRLIPIATVSSCLRH 52
H + P NP +D P S+L PRL P + C+RH
Sbjct: 1746 HVVGPLNPKPIDHREPVFVGGVPESLLTPRLAPSKPFTGCIRH 1788
>gi|226051634 zinc finger protein 414 isoform 1 [Homo sapiens]
Length = 390
Score = 29.3 bits (64), Expect = 0.70
Identities = 17/44 (38%), Positives = 21/44 (47%), Gaps = 7/44 (15%)
Query: 2 PDRGALRRQLPMVLWHRLAPENPDDLDPAPPPSMLVPRLIPIAT 45
P AL R+ P APE P ++DPA P + P L P T
Sbjct: 208 PPPPALDREPP-------APERPPEVDPASAPGLPFPLLEPFTT 244
>gi|226051591 zinc finger protein 414 isoform 2 [Homo sapiens]
Length = 312
Score = 29.3 bits (64), Expect = 0.70
Identities = 17/44 (38%), Positives = 21/44 (47%), Gaps = 7/44 (15%)
Query: 2 PDRGALRRQLPMVLWHRLAPENPDDLDPAPPPSMLVPRLIPIAT 45
P AL R+ P APE P ++DPA P + P L P T
Sbjct: 208 PPPPALDREPP-------APERPPEVDPASAPGLPFPLLEPFTT 244
>gi|4506949 ST6 beta-galactosamide alpha-2,6-sialyltranferase 1
isoform a [Homo sapiens]
Length = 406
Score = 28.5 bits (62), Expect = 1.2
Identities = 12/35 (34%), Positives = 21/35 (60%)
Query: 7 LRRQLPMVLWHRLAPENPDDLDPAPPPSMLVPRLI 41
L+ Q+P LW L +P+++ P PP S ++ +I
Sbjct: 296 LKPQMPWELWDILQEISPEEIQPNPPSSGMLGIII 330
>gi|27765093 ST6 beta-galactosamide alpha-2,6-sialyltranferase 1
isoform b [Homo sapiens]
Length = 175
Score = 28.5 bits (62), Expect = 1.2
Identities = 12/35 (34%), Positives = 21/35 (60%)
Query: 7 LRRQLPMVLWHRLAPENPDDLDPAPPPSMLVPRLI 41
L+ Q+P LW L +P+++ P PP S ++ +I
Sbjct: 65 LKPQMPWELWDILQEISPEEIQPNPPSSGMLGIII 99
>gi|27765091 ST6 beta-galactosamide alpha-2,6-sialyltranferase 1
isoform a [Homo sapiens]
Length = 406
Score = 28.5 bits (62), Expect = 1.2
Identities = 12/35 (34%), Positives = 21/35 (60%)
Query: 7 LRRQLPMVLWHRLAPENPDDLDPAPPPSMLVPRLI 41
L+ Q+P LW L +P+++ P PP S ++ +I
Sbjct: 296 LKPQMPWELWDILQEISPEEIQPNPPSSGMLGIII 330
>gi|239755410 PREDICTED: hypothetical protein [Homo sapiens]
Length = 183
Score = 28.1 bits (61), Expect = 1.6
Identities = 14/40 (35%), Positives = 18/40 (45%)
Query: 9 RQLPMVLWHRLAPENPDDLDPAPPPSMLVPRLIPIATVSS 48
R LP +W RL P L PPP+ P + +SS
Sbjct: 111 RLLPPPVWRRLTPHLRQPLPTPPPPAPPRPDFAKVRVLSS 150
>gi|169201378 PREDICTED: hypothetical protein [Homo sapiens]
Length = 183
Score = 28.1 bits (61), Expect = 1.6
Identities = 14/40 (35%), Positives = 18/40 (45%)
Query: 9 RQLPMVLWHRLAPENPDDLDPAPPPSMLVPRLIPIATVSS 48
R LP +W RL P L PPP+ P + +SS
Sbjct: 111 RLLPPPVWRRLTPHLRQPLPTPPPPAPPRPDFAKVRVLSS 150
>gi|169188835 PREDICTED: hypothetical protein [Homo sapiens]
Length = 183
Score = 28.1 bits (61), Expect = 1.6
Identities = 14/40 (35%), Positives = 18/40 (45%)
Query: 9 RQLPMVLWHRLAPENPDDLDPAPPPSMLVPRLIPIATVSS 48
R LP +W RL P L PPP+ P + +SS
Sbjct: 111 RLLPPPVWRRLTPHLRQPLPTPPPPAPPRPDFAKVRVLSS 150
>gi|119120861 formin-like 3 isoform 2 [Homo sapiens]
Length = 976
Score = 28.1 bits (61), Expect = 1.6
Identities = 15/36 (41%), Positives = 19/36 (52%)
Query: 3 DRGALRRQLPMVLWHRLAPENPDDLDPAPPPSMLVP 38
D AL R P L + P + D L PAPPP ++P
Sbjct: 431 DSEALARVGPAELSEGMPPSDLDLLAPAPPPEEVLP 466
>gi|119120874 formin-like 3 isoform 1 [Homo sapiens]
Length = 1027
Score = 28.1 bits (61), Expect = 1.6
Identities = 15/36 (41%), Positives = 19/36 (52%)
Query: 3 DRGALRRQLPMVLWHRLAPENPDDLDPAPPPSMLVP 38
D AL R P L + P + D L PAPPP ++P
Sbjct: 482 DSEALARVGPAELSEGMPPSDLDLLAPAPPPEEVLP 517
>gi|45580719 osteoclast-associated receptor isoform 1 [Homo sapiens]
Length = 286
Score = 26.6 bits (57), Expect = 4.5
Identities = 10/16 (62%), Positives = 11/16 (68%)
Query: 19 LAPENPDDLDPAPPPS 34
L P+ D DPAPPPS
Sbjct: 267 LLPQTQDSWDPAPPPS 282
>gi|9998946 amiloride-sensitive cation channel 3 isoform b [Homo
sapiens]
Length = 549
Score = 26.6 bits (57), Expect = 4.5
Identities = 22/64 (34%), Positives = 28/64 (43%), Gaps = 9/64 (14%)
Query: 5 GALRRQLPMVLWHRLAPEN---PDDLDPAPPPSMLVPRLIPIATVSSCLRHQLPSVVVVK 61
G+ R Q+P + L P +DL P P PS PRL P T + L H V V
Sbjct: 492 GSHRTQVPHL---SLGPSTLLCSEDLPPLPVPS---PRLSPPPTAPATLSHSSRPAVCVL 545
Query: 62 HSQP 65
+ P
Sbjct: 546 GAPP 549
>gi|40807447 papillary renal cell carcinoma
translocation-associated gene product isoform 1 [Homo
sapiens]
Length = 491
Score = 26.6 bits (57), Expect = 4.5
Identities = 15/37 (40%), Positives = 17/37 (45%)
Query: 2 PDRGALRRQLPMVLWHRLAPENPDDLDPAPPPSMLVP 38
P G L LP L P P L PA PP +L+P
Sbjct: 33 PALGGLFASLPAPKGPALLPPPPQMLAPAFPPPLLLP 69
>gi|40807450 papillary renal cell carcinoma
translocation-associated gene product isoform 2 [Homo
sapiens]
Length = 459
Score = 26.6 bits (57), Expect = 4.5
Identities = 15/37 (40%), Positives = 17/37 (45%)
Query: 2 PDRGALRRQLPMVLWHRLAPENPDDLDPAPPPSMLVP 38
P G L LP L P P L PA PP +L+P
Sbjct: 33 PALGGLFASLPAPKGPALLPPPPQMLAPAFPPPLLLP 69
>gi|157168329 formin 1 [Homo sapiens]
Length = 1196
Score = 26.2 bits (56), Expect = 5.9
Identities = 11/19 (57%), Positives = 11/19 (57%)
Query: 20 APENPDDLDPAPPPSMLVP 38
AP NP PAPPP L P
Sbjct: 712 APPNPGGPPPAPPPPGLAP 730
>gi|149158690 HLA-B associated transcript-2 [Homo sapiens]
Length = 2157
Score = 26.2 bits (56), Expect = 5.9
Identities = 14/29 (48%), Positives = 17/29 (58%), Gaps = 4/29 (13%)
Query: 10 QLPMVLWHRLAPENPDDLDPAPPPSMLVP 38
QLP+V + L P P PAPPP L+P
Sbjct: 1987 QLPVVNFGSLPPAPP----PAPPPLSLLP 2011
>gi|168229174 RNA binding motif protein 27 [Homo sapiens]
Length = 1060
Score = 26.2 bits (56), Expect = 5.9
Identities = 10/18 (55%), Positives = 11/18 (61%)
Query: 21 PENPDDLDPAPPPSMLVP 38
P P L P PPP ML+P
Sbjct: 317 PPPPPGLPPPPPPGMLMP 334
>gi|91176325 bromodomain adjacent to zinc finger domain, 2A [Homo
sapiens]
Length = 1905
Score = 25.8 bits (55), Expect = 7.7
Identities = 8/24 (33%), Positives = 14/24 (58%)
Query: 12 PMVLWHRLAPENPDDLDPAPPPSM 35
P LW ++ + P + P PPP++
Sbjct: 1319 PQALWFNISAQMPCNAAPTPPPAV 1342
>gi|154240732 hypothetical protein LOC201243 [Homo sapiens]
Length = 501
Score = 25.8 bits (55), Expect = 7.7
Identities = 9/11 (81%), Positives = 10/11 (90%)
Query: 28 DPAPPPSMLVP 38
DPAPPP+M VP
Sbjct: 437 DPAPPPTMFVP 447
>gi|122937335 F-box protein 46 [Homo sapiens]
Length = 603
Score = 25.8 bits (55), Expect = 7.7
Identities = 9/14 (64%), Positives = 10/14 (71%)
Query: 20 APENPDDLDPAPPP 33
AP P+D PAPPP
Sbjct: 340 APARPEDTPPAPPP 353
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.321 0.139 0.453
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,684,283
Number of Sequences: 37866
Number of extensions: 163252
Number of successful extensions: 789
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 764
Number of HSP's gapped (non-prelim): 28
length of query: 70
length of database: 18,247,518
effective HSP length: 43
effective length of query: 27
effective length of database: 16,619,280
effective search space: 448720560
effective search space used: 448720560
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.