Guide to the Human Genome
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Name: LOC100291124 Sequence: fasta or formatted (134aa) NCBI GI: 239747471
Description:

PREDICTED: hypothetical protein XP_002347542

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            15.7         21           2
 C cysteine            1.5          2           1
 D aspartate           0.7          1           1
 E glutamate          11.9         16           1
 F phenylalanine       0.0          0           0
 G glycine            15.7         21           2
 H histidine           1.5          2           1
 I isoleucine          0.0          0           0
 K lysine              0.7          1           1
 L leucine             6.7          9           2
 M methionine          0.7          1           1
 N asparagine          0.0          0           0
 P proline            10.4         14           2
 Q glutamine           0.7          1           1
 R arginine            1.5          2           1
 S serine              5.2          7           1
 T threonine          11.2         15           3
 V valine             11.9         16           2
 W tryptophan          2.2          3           1
 X unknown             1.5          2           2
 Y tyrosine            0.0          0           0
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002347542 
LOC100292655          0.066   PREDICTED: similar to armadillo repeat containing, ...
LOC729792             0.061   PREDICTED: hypothetical protein 
LOC100294136          0.061   PREDICTED: hypothetical protein 
LOC100294091          0.061   PREDICTED: hypothetical protein 
LOC729792             0.053   PREDICTED: hypothetical protein 
LOC100294501          0.053   PREDICTED: hypothetical protein 
LOC100294249          0.053   PREDICTED: hypothetical protein XP_002344067 
LOC100294238          0.053   PREDICTED: hypothetical protein 
LOC100294204          0.053   PREDICTED: hypothetical protein 
ACAN                  0.049   aggrecan isoform 2 precursor 
ACAN                  0.049   aggrecan isoform 1 precursor 
LOC729792             0.049   PREDICTED: hypothetical protein 
LOC730401             0.049   PREDICTED: hypothetical protein 
BIN1                  0.041   bridging integrator 1 isoform 5 
RUSC1                 0.041   RUN and SH3 domain containing 1 isoform b 
RUSC1                 0.041   RUN and SH3 domain containing 1 isoform a 
BIN1                  0.033   bridging integrator 1 isoform 7 
BIN1                  0.033   bridging integrator 1 isoform 3 
ZIC2                  0.029   zinc finger protein of the cerebellum 2 
BIN1                  0.029   bridging integrator 1 isoform 9 
BIN1                  0.029   bridging integrator 1 isoform 8 
FOXE1                 0.029   forkhead box E1 
BIN1                  0.029   bridging integrator 1 isoform 2 
BIN1                  0.029   bridging integrator 1 isoform 1 
NAALADL1              0.029   N-acetylated alpha-linked acidic dipeptidase-like 1 ...
CCDC96                0.029   coiled-coil domain containing 96 
LOC100291661          0.025   PREDICTED: hypothetical protein XP_002345523 
LOC100288447          0.025   PREDICTED: hypothetical protein 
LOC100288447          0.025   PREDICTED: hypothetical protein XP_002343814 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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