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Search of human proteins with 239747461
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239747461 PREDICTED: hypothetical protein XP_002347531 [Homo
sapiens]
(57 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239752914 PREDICTED: similar to hCG1793647 [Homo sapiens] 124 2e-29
gi|239747461 PREDICTED: hypothetical protein XP_002347531 [Homo ... 124 2e-29
gi|148229144 small proline-rich protein 3 [Homo sapiens] 62 8e-11
gi|4885607 small proline-rich protein 3 [Homo sapiens] 62 8e-11
gi|45827734 small proline-rich protein 1A [Homo sapiens] 55 9e-09
gi|83582815 small proline-rich protein 1B [Homo sapiens] 53 6e-08
gi|221316699 maltase-glucoamylase [Homo sapiens] 32 0.11
gi|189181724 proteoglycan 4 isoform D [Homo sapiens] 28 1.2
gi|189181722 proteoglycan 4 isoform C [Homo sapiens] 28 1.2
gi|189181720 proteoglycan 4 isoform B [Homo sapiens] 28 1.2
gi|67190163 proteoglycan 4 isoform A [Homo sapiens] 28 1.2
gi|239745855 PREDICTED: hypothetical protein XP_002343606 [Homo ... 28 1.6
gi|239755810 PREDICTED: hypothetical protein [Homo sapiens] 27 2.7
gi|239750310 PREDICTED: hypothetical protein [Homo sapiens] 27 2.7
gi|239744621 PREDICTED: hypothetical protein [Homo sapiens] 27 2.7
gi|10198656 anti-Mullerian hormone receptor, type II [Homo sapiens] 27 2.7
gi|132626688 mediator of DNA-damage checkpoint 1 [Homo sapiens] 26 6.1
gi|109633022 mucosal vascular addressin cell adhesion molecule 1... 26 6.1
gi|71044479 death inducer-obliterator 1 isoform c [Homo sapiens] 26 7.9
gi|75677612 leucine rich repeat containing 37, member A3 [Homo s... 26 7.9
>gi|239752914 PREDICTED: similar to hCG1793647 [Homo sapiens]
Length = 57
Score = 124 bits (310), Expect = 2e-29
Identities = 57/57 (100%), Positives = 57/57 (100%)
Query: 1 MLPKTWNLEPGNTKIPELGCTKIPEPGCTKVLESISTKVPEPHPSTVTSGPAQQKSK 57
MLPKTWNLEPGNTKIPELGCTKIPEPGCTKVLESISTKVPEPHPSTVTSGPAQQKSK
Sbjct: 1 MLPKTWNLEPGNTKIPELGCTKIPEPGCTKVLESISTKVPEPHPSTVTSGPAQQKSK 57
>gi|239747461 PREDICTED: hypothetical protein XP_002347531 [Homo
sapiens]
Length = 57
Score = 124 bits (310), Expect = 2e-29
Identities = 57/57 (100%), Positives = 57/57 (100%)
Query: 1 MLPKTWNLEPGNTKIPELGCTKIPEPGCTKVLESISTKVPEPHPSTVTSGPAQQKSK 57
MLPKTWNLEPGNTKIPELGCTKIPEPGCTKVLESISTKVPEPHPSTVTSGPAQQKSK
Sbjct: 1 MLPKTWNLEPGNTKIPELGCTKIPEPGCTKVLESISTKVPEPHPSTVTSGPAQQKSK 57
>gi|148229144 small proline-rich protein 3 [Homo sapiens]
Length = 169
Score = 62.4 bits (150), Expect = 8e-11
Identities = 38/89 (42%), Positives = 41/89 (46%), Gaps = 40/89 (44%)
Query: 9 EPGNTKIPELGCTKIPEPGCTKVLESISTKVPEPH------------------------- 43
EPG TK+PE GCTK+PEPGCTKV E TKVPEP
Sbjct: 79 EPGCTKVPEPGCTKVPEPGCTKVPEPGYTKVPEPGSIKVPDQGFIKFPEPGAIKVPEQGY 138
Query: 44 ---------------PSTVTSGPAQQKSK 57
PSTVT GPAQQK+K
Sbjct: 139 TKVPVPGYTKLPEPCPSTVTPGPAQQKTK 167
Score = 62.0 bits (149), Expect = 1e-10
Identities = 27/34 (79%), Positives = 29/34 (85%)
Query: 9 EPGNTKIPELGCTKIPEPGCTKVLESISTKVPEP 42
+PGNTKIPE GCTK+PEPGCTKV E TKVPEP
Sbjct: 47 QPGNTKIPEPGCTKVPEPGCTKVPEPGCTKVPEP 80
Score = 59.3 bits (142), Expect = 6e-10
Identities = 26/34 (76%), Positives = 28/34 (82%)
Query: 9 EPGNTKIPELGCTKIPEPGCTKVLESISTKVPEP 42
EPG TK+PE GCTK+PEPGCTKV E TKVPEP
Sbjct: 55 EPGCTKVPEPGCTKVPEPGCTKVPEPGCTKVPEP 88
Score = 59.3 bits (142), Expect = 6e-10
Identities = 26/34 (76%), Positives = 28/34 (82%)
Query: 9 EPGNTKIPELGCTKIPEPGCTKVLESISTKVPEP 42
EPG TK+PE GCTK+PEPGCTKV E TKVPEP
Sbjct: 63 EPGCTKVPEPGCTKVPEPGCTKVPEPGCTKVPEP 96
Score = 50.4 bits (119), Expect = 3e-07
Identities = 23/34 (67%), Positives = 27/34 (79%)
Query: 9 EPGNTKIPELGCTKIPEPGCTKVLESISTKVPEP 42
EP ++K+P+ G TKIPEPGCTKV E TKVPEP
Sbjct: 39 EPCHSKVPQPGNTKIPEPGCTKVPEPGCTKVPEP 72
>gi|4885607 small proline-rich protein 3 [Homo sapiens]
Length = 169
Score = 62.4 bits (150), Expect = 8e-11
Identities = 38/89 (42%), Positives = 41/89 (46%), Gaps = 40/89 (44%)
Query: 9 EPGNTKIPELGCTKIPEPGCTKVLESISTKVPEPH------------------------- 43
EPG TK+PE GCTK+PEPGCTKV E TKVPEP
Sbjct: 79 EPGCTKVPEPGCTKVPEPGCTKVPEPGYTKVPEPGSIKVPDQGFIKFPEPGAIKVPEQGY 138
Query: 44 ---------------PSTVTSGPAQQKSK 57
PSTVT GPAQQK+K
Sbjct: 139 TKVPVPGYTKLPEPCPSTVTPGPAQQKTK 167
Score = 62.0 bits (149), Expect = 1e-10
Identities = 27/34 (79%), Positives = 29/34 (85%)
Query: 9 EPGNTKIPELGCTKIPEPGCTKVLESISTKVPEP 42
+PGNTKIPE GCTK+PEPGCTKV E TKVPEP
Sbjct: 47 QPGNTKIPEPGCTKVPEPGCTKVPEPGCTKVPEP 80
Score = 59.3 bits (142), Expect = 6e-10
Identities = 26/34 (76%), Positives = 28/34 (82%)
Query: 9 EPGNTKIPELGCTKIPEPGCTKVLESISTKVPEP 42
EPG TK+PE GCTK+PEPGCTKV E TKVPEP
Sbjct: 55 EPGCTKVPEPGCTKVPEPGCTKVPEPGCTKVPEP 88
Score = 59.3 bits (142), Expect = 6e-10
Identities = 26/34 (76%), Positives = 28/34 (82%)
Query: 9 EPGNTKIPELGCTKIPEPGCTKVLESISTKVPEP 42
EPG TK+PE GCTK+PEPGCTKV E TKVPEP
Sbjct: 63 EPGCTKVPEPGCTKVPEPGCTKVPEPGCTKVPEP 96
Score = 50.4 bits (119), Expect = 3e-07
Identities = 23/34 (67%), Positives = 27/34 (79%)
Query: 9 EPGNTKIPELGCTKIPEPGCTKVLESISTKVPEP 42
EP ++K+P+ G TKIPEPGCTKV E TKVPEP
Sbjct: 39 EPCHSKVPQPGNTKIPEPGCTKVPEPGCTKVPEP 72
>gi|45827734 small proline-rich protein 1A [Homo sapiens]
Length = 89
Score = 55.5 bits (132), Expect = 9e-09
Identities = 31/56 (55%), Positives = 36/56 (64%), Gaps = 2/56 (3%)
Query: 2 LPKTWNLEPGNTKIPELGCTKIPEPGCTKVLESISTKVPEPHPSTVTSGPAQQKSK 57
+PKT EP + K+PE K+PEP KV E KVPEP PSTVT PAQQK+K
Sbjct: 34 IPKT--KEPCHPKVPEPCHPKVPEPCQPKVPEPCQPKVPEPCPSTVTPAPAQQKTK 87
>gi|83582815 small proline-rich protein 1B [Homo sapiens]
Length = 89
Score = 52.8 bits (125), Expect = 6e-08
Identities = 30/56 (53%), Positives = 35/56 (62%), Gaps = 2/56 (3%)
Query: 2 LPKTWNLEPGNTKIPELGCTKIPEPGCTKVLESISTKVPEPHPSTVTSGPAQQKSK 57
+PKT EP + K+PE K+PEP KV E KVPEP PS VT PAQQK+K
Sbjct: 34 IPKT--KEPCHPKVPEPCHPKVPEPCQPKVPEPCHPKVPEPCPSIVTPAPAQQKTK 87
>gi|221316699 maltase-glucoamylase [Homo sapiens]
Length = 1857
Score = 32.0 bits (71), Expect = 0.11
Identities = 15/45 (33%), Positives = 23/45 (51%)
Query: 9 EPGNTKIPELGCTKIPEPGCTKVLESISTKVPEPHPSTVTSGPAQ 53
+PG T P+ G T P+PG T + +T P+P + T A+
Sbjct: 45 DPGTTGTPDPGTTGTPDPGTTGTTHARTTGPPDPGTTGTTPVSAE 89
>gi|189181724 proteoglycan 4 isoform D [Homo sapiens]
Length = 1270
Score = 28.5 bits (62), Expect = 1.2
Identities = 18/43 (41%), Positives = 20/43 (46%), Gaps = 2/43 (4%)
Query: 13 TKIPELGCTKIPEPGCTKVLESISTKVPEPHPSTVTSGPAQQK 55
TK P L K P P K E ST EP P+T+ S P K
Sbjct: 205 TKGPALTTPKEPTPTTPK--EPASTTPKEPTPTTIKSAPTTPK 245
Score = 28.1 bits (61), Expect = 1.6
Identities = 19/53 (35%), Positives = 20/53 (37%), Gaps = 2/53 (3%)
Query: 3 PKTWNLEPGNTKIPELGCTKIPEPGCTKVLESISTKVPEPHPSTVTSGPAQQK 55
P T P K P TK P P K E T EP P+T S P K
Sbjct: 249 PTTTKSAPTTPKEPAPTTTKEPAPTTPK--EPAPTTTKEPAPTTTKSAPTTPK 299
Score = 28.1 bits (61), Expect = 1.6
Identities = 18/46 (39%), Positives = 19/46 (41%), Gaps = 3/46 (6%)
Query: 10 PGNTKIPELGCTKIPEPGCTKVLESISTKVPEPHPSTVTSGPAQQK 55
P TK P K P P TK S T EP P+T S P K
Sbjct: 374 PTTTKEPSPTTPKEPAPTTTK---SAPTTTKEPAPTTTKSAPTTPK 416
>gi|189181722 proteoglycan 4 isoform C [Homo sapiens]
Length = 1311
Score = 28.5 bits (62), Expect = 1.2
Identities = 18/43 (41%), Positives = 20/43 (46%), Gaps = 2/43 (4%)
Query: 13 TKIPELGCTKIPEPGCTKVLESISTKVPEPHPSTVTSGPAQQK 55
TK P L K P P K E ST EP P+T+ S P K
Sbjct: 246 TKGPALTTPKEPTPTTPK--EPASTTPKEPTPTTIKSAPTTPK 286
Score = 28.1 bits (61), Expect = 1.6
Identities = 19/53 (35%), Positives = 20/53 (37%), Gaps = 2/53 (3%)
Query: 3 PKTWNLEPGNTKIPELGCTKIPEPGCTKVLESISTKVPEPHPSTVTSGPAQQK 55
P T P K P TK P P K E T EP P+T S P K
Sbjct: 290 PTTTKSAPTTPKEPAPTTTKEPAPTTPK--EPAPTTTKEPAPTTTKSAPTTPK 340
Score = 28.1 bits (61), Expect = 1.6
Identities = 18/46 (39%), Positives = 19/46 (41%), Gaps = 3/46 (6%)
Query: 10 PGNTKIPELGCTKIPEPGCTKVLESISTKVPEPHPSTVTSGPAQQK 55
P TK P K P P TK S T EP P+T S P K
Sbjct: 415 PTTTKEPSPTTPKEPAPTTTK---SAPTTTKEPAPTTTKSAPTTPK 457
>gi|189181720 proteoglycan 4 isoform B [Homo sapiens]
Length = 1363
Score = 28.5 bits (62), Expect = 1.2
Identities = 18/43 (41%), Positives = 20/43 (46%), Gaps = 2/43 (4%)
Query: 13 TKIPELGCTKIPEPGCTKVLESISTKVPEPHPSTVTSGPAQQK 55
TK P L K P P K E ST EP P+T+ S P K
Sbjct: 298 TKGPALTTPKEPTPTTPK--EPASTTPKEPTPTTIKSAPTTPK 338
Score = 28.1 bits (61), Expect = 1.6
Identities = 19/53 (35%), Positives = 20/53 (37%), Gaps = 2/53 (3%)
Query: 3 PKTWNLEPGNTKIPELGCTKIPEPGCTKVLESISTKVPEPHPSTVTSGPAQQK 55
P T P K P TK P P K E T EP P+T S P K
Sbjct: 342 PTTTKSAPTTPKEPAPTTTKEPAPTTPK--EPAPTTTKEPAPTTTKSAPTTPK 392
Score = 28.1 bits (61), Expect = 1.6
Identities = 18/46 (39%), Positives = 19/46 (41%), Gaps = 3/46 (6%)
Query: 10 PGNTKIPELGCTKIPEPGCTKVLESISTKVPEPHPSTVTSGPAQQK 55
P TK P K P P TK S T EP P+T S P K
Sbjct: 467 PTTTKEPSPTTPKEPAPTTTK---SAPTTTKEPAPTTTKSAPTTPK 509
>gi|67190163 proteoglycan 4 isoform A [Homo sapiens]
Length = 1404
Score = 28.5 bits (62), Expect = 1.2
Identities = 18/43 (41%), Positives = 20/43 (46%), Gaps = 2/43 (4%)
Query: 13 TKIPELGCTKIPEPGCTKVLESISTKVPEPHPSTVTSGPAQQK 55
TK P L K P P K E ST EP P+T+ S P K
Sbjct: 339 TKGPALTTPKEPTPTTPK--EPASTTPKEPTPTTIKSAPTTPK 379
Score = 28.1 bits (61), Expect = 1.6
Identities = 19/53 (35%), Positives = 20/53 (37%), Gaps = 2/53 (3%)
Query: 3 PKTWNLEPGNTKIPELGCTKIPEPGCTKVLESISTKVPEPHPSTVTSGPAQQK 55
P T P K P TK P P K E T EP P+T S P K
Sbjct: 383 PTTTKSAPTTPKEPAPTTTKEPAPTTPK--EPAPTTTKEPAPTTTKSAPTTPK 433
Score = 28.1 bits (61), Expect = 1.6
Identities = 18/46 (39%), Positives = 19/46 (41%), Gaps = 3/46 (6%)
Query: 10 PGNTKIPELGCTKIPEPGCTKVLESISTKVPEPHPSTVTSGPAQQK 55
P TK P K P P TK S T EP P+T S P K
Sbjct: 508 PTTTKEPSPTTPKEPAPTTTK---SAPTTTKEPAPTTTKSAPTTPK 550
>gi|239745855 PREDICTED: hypothetical protein XP_002343606 [Homo
sapiens]
Length = 870
Score = 28.1 bits (61), Expect = 1.6
Identities = 15/41 (36%), Positives = 19/41 (46%)
Query: 9 EPGNTKIPELGCTKIPEPGCTKVLESISTKVPEPHPSTVTS 49
E +T+ P+LG IPEP + K PHP V S
Sbjct: 742 EETSTQPPDLGLAIIPEPTTETGHSTALEKTTAPHPDRVQS 782
>gi|239755810 PREDICTED: hypothetical protein [Homo sapiens]
Length = 499
Score = 27.3 bits (59), Expect = 2.7
Identities = 16/56 (28%), Positives = 23/56 (41%), Gaps = 8/56 (14%)
Query: 3 PKTWNLEPGNTKIPELGCTKIPEP--------GCTKVLESISTKVPEPHPSTVTSG 50
P+T P ++ P GC+ +P GC +S +P P P VT G
Sbjct: 354 PQTLAPHPQASRRPRAGCSLSLQPPHQRGLRDGCPSAAGRLSPALPAPSPREVTLG 409
>gi|239750310 PREDICTED: hypothetical protein [Homo sapiens]
Length = 499
Score = 27.3 bits (59), Expect = 2.7
Identities = 16/56 (28%), Positives = 23/56 (41%), Gaps = 8/56 (14%)
Query: 3 PKTWNLEPGNTKIPELGCTKIPEP--------GCTKVLESISTKVPEPHPSTVTSG 50
P+T P ++ P GC+ +P GC +S +P P P VT G
Sbjct: 354 PQTLAPHPQASRRPRAGCSLSLQPPHQRGLRDGCPSAAGRLSPALPAPSPREVTLG 409
>gi|239744621 PREDICTED: hypothetical protein [Homo sapiens]
Length = 536
Score = 27.3 bits (59), Expect = 2.7
Identities = 16/56 (28%), Positives = 23/56 (41%), Gaps = 8/56 (14%)
Query: 3 PKTWNLEPGNTKIPELGCTKIPEP--------GCTKVLESISTKVPEPHPSTVTSG 50
P+T P ++ P GC+ +P GC +S +P P P VT G
Sbjct: 391 PQTLAPHPQASRRPRAGCSLSLQPPHQRGLRDGCPSAAGRLSPALPAPSPREVTLG 446
>gi|10198656 anti-Mullerian hormone receptor, type II [Homo sapiens]
Length = 573
Score = 27.3 bits (59), Expect = 2.7
Identities = 14/40 (35%), Positives = 17/40 (42%), Gaps = 3/40 (7%)
Query: 6 WNLEPGNTKIPELGCTKIPEPGCTKVLESISTKVPEPHPS 45
WNL ++ GC EPGC + S P HPS
Sbjct: 65 WNLTQDRAQVEMQGCRDSDEPGCESLHCDPS---PRAHPS 101
>gi|132626688 mediator of DNA-damage checkpoint 1 [Homo sapiens]
Length = 2089
Score = 26.2 bits (56), Expect = 6.1
Identities = 10/20 (50%), Positives = 13/20 (65%)
Query: 36 STKVPEPHPSTVTSGPAQQK 55
++ PEPHPST T+ P K
Sbjct: 1121 TSAAPEPHPSTSTAQPVTPK 1140
Score = 26.2 bits (56), Expect = 6.1
Identities = 11/26 (42%), Positives = 13/26 (50%)
Query: 30 KVLESISTKVPEPHPSTVTSGPAQQK 55
K E + PEPHP+T T P K
Sbjct: 1607 KTPEPVVPTAPEPHPTTSTDQPVTPK 1632
>gi|109633022 mucosal vascular addressin cell adhesion molecule 1
isoform a precursor [Homo sapiens]
Length = 382
Score = 26.2 bits (56), Expect = 6.1
Identities = 18/47 (38%), Positives = 21/47 (44%), Gaps = 1/47 (2%)
Query: 9 EPGNTKIPELGCTKIPEPGCTKVLESISTKVPEPHPSTVTSGPAQQK 55
EP +T PE T PE T E T PEP P + PA Q+
Sbjct: 231 EPPDTTSPESPDTTSPESPDTTSQEPPDTTSPEP-PDKTSPEPAPQQ 276
>gi|71044479 death inducer-obliterator 1 isoform c [Homo sapiens]
Length = 2240
Score = 25.8 bits (55), Expect = 7.9
Identities = 11/30 (36%), Positives = 15/30 (50%)
Query: 23 IPEPGCTKVLESISTKVPEPHPSTVTSGPA 52
+PEP KVL S+ P P + T+ A
Sbjct: 1267 LPEPPVLKVLSSLKPAAPSPATAATTAAAA 1296
>gi|75677612 leucine rich repeat containing 37, member A3 [Homo
sapiens]
Length = 1634
Score = 25.8 bits (55), Expect = 7.9
Identities = 13/39 (33%), Positives = 18/39 (46%)
Query: 9 EPGNTKIPELGCTKIPEPGCTKVLESISTKVPEPHPSTV 47
E +T++P+LG IPEP + K P P V
Sbjct: 742 EETSTQLPDLGLAIIPEPTTETGHSTALEKTTAPRPDRV 780
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.306 0.128 0.393
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,173,874
Number of Sequences: 37866
Number of extensions: 140483
Number of successful extensions: 337
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 250
Number of HSP's gapped (non-prelim): 65
length of query: 57
length of database: 18,247,518
effective HSP length: 30
effective length of query: 27
effective length of database: 17,111,538
effective search space: 462011526
effective search space used: 462011526
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (22.0 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.