Guide to the Human Genome
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Search of human proteins with 239747400

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|239747400 PREDICTED: similar to hCG2040319 [Homo sapiens]
         (274 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|169160873 PREDICTED: similar to hCG2040319 [Homo sapiens]          563   e-161
gi|239747400 PREDICTED: similar to hCG2040319 [Homo sapiens]          563   e-161
gi|239741226 PREDICTED: similar to hCG2040319 [Homo sapiens]          563   e-161
gi|10092691 tight junction protein 3 [Homo sapiens]                   293   1e-79
gi|42518070 tight junction protein 2 (zona occludens 2) isoform ...    92   6e-19
gi|42518065 tight junction protein 2 (zona occludens 2) isoform ...    91   1e-18
gi|116875767 tight junction protein 1 isoform a [Homo sapiens]         87   2e-17
gi|116875765 tight junction protein 1 isoform b [Homo sapiens]         82   4e-16
gi|151101459 SAPS domain family, member 1 [Homo sapiens]               37   0.019
gi|148806881 hypothetical protein LOC57608 [Homo sapiens]              35   0.092
gi|14149716 protein phosphatase 1, regulatory subunit 12C [Homo ...    35   0.092
gi|124028519 hypothetical protein LOC158401 isoform 2 [Homo sapi...    33   0.21 
gi|124028515 hypothetical protein LOC158401 isoform 1 [Homo sapi...    33   0.21 
gi|170784854 PTPRF interacting protein, binding protein 2 (lipri...    33   0.27 
gi|7706589 GNAS complex locus NESP55 [Homo sapiens]                    33   0.35 
gi|195539337 S-adenosylhomocysteine hydrolase-like 2 isoform b [...    32   0.46 
gi|24308043 S-adenosylhomocysteine hydrolase-like 2 isoform a [H...    32   0.46 
gi|91208437 GEM interacting protein [Homo sapiens]                     32   0.46 
gi|22538461 nuclear receptor co-repressor 1 [Homo sapiens]             32   0.60 
gi|148539628 discs, large homolog 1 isoform 1 [Homo sapiens]           32   0.60 
gi|148539578 discs, large homolog 1 isoform 2 [Homo sapiens]           32   0.60 
gi|34365793 WNK lysine deficient protein kinase 4 [Homo sapiens]       32   0.78 
gi|124430752 kinesin family member 26B [Homo sapiens]                  32   0.78 
gi|169206171 PREDICTED: hypothetical protein [Homo sapiens]            31   1.0  
gi|239751180 PREDICTED: hypothetical protein XP_002347740 [Homo ...    31   1.0  
gi|239745668 PREDICTED: hypothetical protein XP_002343538 [Homo ...    31   1.0  
gi|239745414 PREDICTED: NPIP-like protein 2 isoform 2 [Homo sapi...    31   1.0  
gi|169206489 PREDICTED: hypothetical protein [Homo sapiens]            31   1.3  
gi|169162152 PREDICTED: hypothetical protein [Homo sapiens]            31   1.3  
gi|169205942 PREDICTED: hypothetical protein [Homo sapiens]            31   1.3  

>gi|169160873 PREDICTED: similar to hCG2040319 [Homo sapiens]
          Length = 274

 Score =  563 bits (1452), Expect = e-161
 Identities = 274/274 (100%), Positives = 274/274 (100%)

Query: 1   MPYIQKRKRKFMDLHKELSWLAPASCRSTRRLYAQAQKLRKQSSHLFTATIPLNGTSDTW 60
           MPYIQKRKRKFMDLHKELSWLAPASCRSTRRLYAQAQKLRKQSSHLFTATIPLNGTSDTW
Sbjct: 1   MPYIQKRKRKFMDLHKELSWLAPASCRSTRRLYAQAQKLRKQSSHLFTATIPLNGTSDTW 60

Query: 61  YQEFKAIIREQQTRPIWTAEDKLDGSLEDNPHRGLADSSADLSCDSRVNSDYWRRRKARA 120
           YQEFKAIIREQQTRPIWTAEDKLDGSLEDNPHRGLADSSADLSCDSRVNSDYWRRRKARA
Sbjct: 61  YQEFKAIIREQQTRPIWTAEDKLDGSLEDNPHRGLADSSADLSCDSRVNSDYWRRRKARA 120

Query: 121 ARTLMASATQTASGGPYTDADDELPAPALDRSSEPVQADEPQSPRVRGRISAHQGPQVDS 180
           ARTLMASATQTASGGPYTDADDELPAPALDRSSEPVQADEPQSPRVRGRISAHQGPQVDS
Sbjct: 121 ARTLMASATQTASGGPYTDADDELPAPALDRSSEPVQADEPQSPRVRGRISAHQGPQVDS 180

Query: 181 PHPQGQRRQDSMRTCEPEALKKKFTRVRDAESPMKMATTGVRPLTCDLSQAASWSVLLLP 240
           PHPQGQRRQDSMRTCEPEALKKKFTRVRDAESPMKMATTGVRPLTCDLSQAASWSVLLLP
Sbjct: 181 PHPQGQRRQDSMRTCEPEALKKKFTRVRDAESPMKMATTGVRPLTCDLSQAASWSVLLLP 240

Query: 241 SWGWDSVSCTEPTTSPPSAWSLLNRVFSHQKKKK 274
           SWGWDSVSCTEPTTSPPSAWSLLNRVFSHQKKKK
Sbjct: 241 SWGWDSVSCTEPTTSPPSAWSLLNRVFSHQKKKK 274


>gi|239747400 PREDICTED: similar to hCG2040319 [Homo sapiens]
          Length = 274

 Score =  563 bits (1452), Expect = e-161
 Identities = 274/274 (100%), Positives = 274/274 (100%)

Query: 1   MPYIQKRKRKFMDLHKELSWLAPASCRSTRRLYAQAQKLRKQSSHLFTATIPLNGTSDTW 60
           MPYIQKRKRKFMDLHKELSWLAPASCRSTRRLYAQAQKLRKQSSHLFTATIPLNGTSDTW
Sbjct: 1   MPYIQKRKRKFMDLHKELSWLAPASCRSTRRLYAQAQKLRKQSSHLFTATIPLNGTSDTW 60

Query: 61  YQEFKAIIREQQTRPIWTAEDKLDGSLEDNPHRGLADSSADLSCDSRVNSDYWRRRKARA 120
           YQEFKAIIREQQTRPIWTAEDKLDGSLEDNPHRGLADSSADLSCDSRVNSDYWRRRKARA
Sbjct: 61  YQEFKAIIREQQTRPIWTAEDKLDGSLEDNPHRGLADSSADLSCDSRVNSDYWRRRKARA 120

Query: 121 ARTLMASATQTASGGPYTDADDELPAPALDRSSEPVQADEPQSPRVRGRISAHQGPQVDS 180
           ARTLMASATQTASGGPYTDADDELPAPALDRSSEPVQADEPQSPRVRGRISAHQGPQVDS
Sbjct: 121 ARTLMASATQTASGGPYTDADDELPAPALDRSSEPVQADEPQSPRVRGRISAHQGPQVDS 180

Query: 181 PHPQGQRRQDSMRTCEPEALKKKFTRVRDAESPMKMATTGVRPLTCDLSQAASWSVLLLP 240
           PHPQGQRRQDSMRTCEPEALKKKFTRVRDAESPMKMATTGVRPLTCDLSQAASWSVLLLP
Sbjct: 181 PHPQGQRRQDSMRTCEPEALKKKFTRVRDAESPMKMATTGVRPLTCDLSQAASWSVLLLP 240

Query: 241 SWGWDSVSCTEPTTSPPSAWSLLNRVFSHQKKKK 274
           SWGWDSVSCTEPTTSPPSAWSLLNRVFSHQKKKK
Sbjct: 241 SWGWDSVSCTEPTTSPPSAWSLLNRVFSHQKKKK 274


>gi|239741226 PREDICTED: similar to hCG2040319 [Homo sapiens]
          Length = 274

 Score =  563 bits (1452), Expect = e-161
 Identities = 274/274 (100%), Positives = 274/274 (100%)

Query: 1   MPYIQKRKRKFMDLHKELSWLAPASCRSTRRLYAQAQKLRKQSSHLFTATIPLNGTSDTW 60
           MPYIQKRKRKFMDLHKELSWLAPASCRSTRRLYAQAQKLRKQSSHLFTATIPLNGTSDTW
Sbjct: 1   MPYIQKRKRKFMDLHKELSWLAPASCRSTRRLYAQAQKLRKQSSHLFTATIPLNGTSDTW 60

Query: 61  YQEFKAIIREQQTRPIWTAEDKLDGSLEDNPHRGLADSSADLSCDSRVNSDYWRRRKARA 120
           YQEFKAIIREQQTRPIWTAEDKLDGSLEDNPHRGLADSSADLSCDSRVNSDYWRRRKARA
Sbjct: 61  YQEFKAIIREQQTRPIWTAEDKLDGSLEDNPHRGLADSSADLSCDSRVNSDYWRRRKARA 120

Query: 121 ARTLMASATQTASGGPYTDADDELPAPALDRSSEPVQADEPQSPRVRGRISAHQGPQVDS 180
           ARTLMASATQTASGGPYTDADDELPAPALDRSSEPVQADEPQSPRVRGRISAHQGPQVDS
Sbjct: 121 ARTLMASATQTASGGPYTDADDELPAPALDRSSEPVQADEPQSPRVRGRISAHQGPQVDS 180

Query: 181 PHPQGQRRQDSMRTCEPEALKKKFTRVRDAESPMKMATTGVRPLTCDLSQAASWSVLLLP 240
           PHPQGQRRQDSMRTCEPEALKKKFTRVRDAESPMKMATTGVRPLTCDLSQAASWSVLLLP
Sbjct: 181 PHPQGQRRQDSMRTCEPEALKKKFTRVRDAESPMKMATTGVRPLTCDLSQAASWSVLLLP 240

Query: 241 SWGWDSVSCTEPTTSPPSAWSLLNRVFSHQKKKK 274
           SWGWDSVSCTEPTTSPPSAWSLLNRVFSHQKKKK
Sbjct: 241 SWGWDSVSCTEPTTSPPSAWSLLNRVFSHQKKKK 274


>gi|10092691 tight junction protein 3 [Homo sapiens]
          Length = 952

 Score =  293 bits (750), Expect = 1e-79
 Identities = 155/196 (79%), Positives = 156/196 (79%), Gaps = 5/196 (2%)

Query: 20  WLAPASCRSTRRLYAQAQKLRKQSSHLFTATIPLNGTSDTWYQEFKAIIREQQTRPIWTA 79
           WLAPAS RSTRRLYAQAQKLRK SSHLFTATIPLNGTSDTWYQE KAIIREQQTRPIWTA
Sbjct: 745 WLAPASRRSTRRLYAQAQKLRKHSSHLFTATIPLNGTSDTWYQELKAIIREQQTRPIWTA 804

Query: 80  EDKLDGSLEDN---PHRGLADSSADLSCDSRVNSDYWRRRKARAARTLMASATQTASGGP 136
           ED+LDGSLEDN   PH GLADSSADLSCDSRVNSDY                     GGP
Sbjct: 805 EDQLDGSLEDNLDLPHHGLADSSADLSCDSRVNSDY--ETDGEGGAYTDGEGYTDGEGGP 862

Query: 137 YTDADDELPAPALDRSSEPVQADEPQSPRVRGRISAHQGPQVDSPHPQGQRRQDSMRTCE 196
           YTD DDE PAPAL RSSEPVQADE QSPR RGRISAHQG QVDS HPQGQ RQDSMRT E
Sbjct: 863 YTDVDDEPPAPALARSSEPVQADESQSPRDRGRISAHQGAQVDSRHPQGQWRQDSMRTYE 922

Query: 197 PEALKKKFTRVRDAES 212
            EALKKKF RV DAES
Sbjct: 923 REALKKKFMRVHDAES 938


>gi|42518070 tight junction protein 2 (zona occludens 2) isoform 1
           [Homo sapiens]
          Length = 1190

 Score = 91.7 bits (226), Expect = 6e-19
 Identities = 62/177 (35%), Positives = 92/177 (51%), Gaps = 30/177 (16%)

Query: 21  LAPASCRSTRRLYAQAQKLRKQSSHLFTATIPLNGTSDTWYQEFKAIIREQQTRPIWTAE 80
           L P S +S+R+L+ QA KL+K  +HLFTATI LN  +D+W+   K  I+ QQ   +W +E
Sbjct: 828 LNPTSNKSSRKLFDQANKLKKTCAHLFTATINLNSANDSWFGSLKDTIQHQQGEAVWVSE 887

Query: 81  DKLDGSLEDNPHRGLADSSA----DLSCDSRVNSDYWRRRKARAARTLMASATQTASGGP 136
            K++G ++D+P   ++  +A     LSCDSR+ SD+                     GG 
Sbjct: 888 GKMEG-MDDDPEDRMSYLTAMGADYLSCDSRLISDF---------------EDTDGEGGA 931

Query: 137 YTDADDELPA-----PALDRSSEPVQADE-----PQSPRVRGRISAHQGPQVDSPHP 183
           YTD + + PA      ++ RSSEPVQ +E        PR + R +A      D+  P
Sbjct: 932 YTDNELDEPAEEPLVSSITRSSEPVQHEESIRKPSPEPRAQMRRAASSDQLRDNSPP 988


>gi|42518065 tight junction protein 2 (zona occludens 2) isoform 2
           [Homo sapiens]
          Length = 1043

 Score = 90.9 bits (224), Expect = 1e-18
 Identities = 56/149 (37%), Positives = 83/149 (55%), Gaps = 25/149 (16%)

Query: 21  LAPASCRSTRRLYAQAQKLRKQSSHLFTATIPLNGTSDTWYQEFKAIIREQQTRPIWTAE 80
           L P S +S+R+L+ QA KL+K  +HLFTATI LN  +D+W+   K  I+ QQ   +W +E
Sbjct: 828 LNPTSNKSSRKLFDQANKLKKTCAHLFTATINLNSANDSWFGSLKDTIQHQQGEAVWVSE 887

Query: 81  DKLDGSLEDNPHRGLADSSA----DLSCDSRVNSDYWRRRKARAARTLMASATQTASGGP 136
            K++G ++D+P   ++  +A     LSCDSR+ SD+                     GG 
Sbjct: 888 GKMEG-MDDDPEDRMSYLTAMGADYLSCDSRLISDF---------------EDTDGEGGA 931

Query: 137 YTDADDELPA-----PALDRSSEPVQADE 160
           YTD + + PA      ++ RSSEPVQ +E
Sbjct: 932 YTDNELDEPAEEPLVSSITRSSEPVQHEE 960


>gi|116875767 tight junction protein 1 isoform a [Homo sapiens]
          Length = 1748

 Score = 86.7 bits (213), Expect = 2e-17
 Identities = 79/259 (30%), Positives = 114/259 (44%), Gaps = 51/259 (19%)

Query: 21  LAPASCRSTRRLYAQAQKLRKQSSHLFTATIPLNGTSDTWYQEFKAIIREQQTRPIWTAE 80
           L P S +S R+LY ++ KLRK + HLFT TI LN  +D WY   K  I++QQ + +W +E
Sbjct: 743 LCPESRKSARKLYERSHKLRKNNHHLFTTTINLNSMNDGWYGALKEAIQQQQNQLVWVSE 802

Query: 81  DKLDGS------LEDNPHRGLADSSAD---LSCDSRVNSDYWRRRKARAARTLMASATQT 131
            K DG+      L D+    L+   ++    S DSR  SDY                T T
Sbjct: 803 GKADGATSDDLDLHDDRLSYLSAPGSEYSMYSTDSRHTSDY--------------EDTDT 848

Query: 132 ASGGPYTDAD------DEL---PAPALDRSSEPVQADEPQSPRVRGRISAHQGPQVDSPH 182
             GG YTD +      DE+   P  A+ RSSEPV+ D             H   Q   P+
Sbjct: 849 -EGGAYTDQELDETLNDEVGTPPESAITRSSEPVREDSS---------GMHHENQTYPPY 898

Query: 183 PQGQRRQDSMRTCEPEALKKKFTRVRDAESPMKMATTGVRPLTCDLSQAASWSVLLLPSW 242
               + Q   R   P   K    +  +A SP+   +    P +   + A + +V L    
Sbjct: 899 SPQAQPQPIHRIDSP-GFKPASQQKAEASSPVPYLSPETNPASS--TSAVNHNVNL---- 951

Query: 243 GWDSVSCTEPTTSPPSAWS 261
              +V   EPT +P +++S
Sbjct: 952 --TNVRLEEPTPAPSTSYS 968


>gi|116875765 tight junction protein 1 isoform b [Homo sapiens]
          Length = 1668

 Score = 82.4 bits (202), Expect = 4e-16
 Identities = 59/157 (37%), Positives = 79/157 (50%), Gaps = 33/157 (21%)

Query: 21  LAPASCRSTRRLYAQAQKLRKQSSHLFTATIPLNGTSDTWYQEFKAIIREQQTRPIWTAE 80
           L P S +S R+LY ++ KLRK + HLFT TI LN  +D WY   K  I++QQ + +W +E
Sbjct: 743 LCPESRKSARKLYERSHKLRKNNHHLFTTTINLNSMNDGWYGALKEAIQQQQNQLVWVSE 802

Query: 81  DKLDGS------LEDNPHRGLADSSAD---LSCDSRVNSDYWRRRKARAARTLMASATQT 131
            K DG+      L D+    L+   ++    S DSR  SDY                T T
Sbjct: 803 GKADGATSDDLDLHDDRLSYLSAPGSEYSMYSTDSRHTSDY--------------EDTDT 848

Query: 132 ASGGPYTDAD------DEL---PAPALDRSSEPVQAD 159
             GG YTD +      DE+   P  A+ RSSEPV+ D
Sbjct: 849 -EGGAYTDQELDETLNDEVGTPPESAITRSSEPVRED 884


>gi|151101459 SAPS domain family, member 1 [Homo sapiens]
          Length = 881

 Score = 37.0 bits (84), Expect = 0.019
 Identities = 19/49 (38%), Positives = 23/49 (46%), Gaps = 4/49 (8%)

Query: 137 YTDADDELPAPALDRSSEPVQADEPQSPRVRGRISAHQGPQVDSPHPQG 185
           Y     + P P+   + +PV  D P SPRV G    H GP    P PQG
Sbjct: 700 YPSPGPQPPGPSWTATFDPVPTDAPTSPRVSGEEELHTGP----PAPQG 744


>gi|148806881 hypothetical protein LOC57608 [Homo sapiens]
          Length = 1359

 Score = 34.7 bits (78), Expect = 0.092
 Identities = 23/55 (41%), Positives = 27/55 (49%), Gaps = 7/55 (12%)

Query: 162 QSPRVRGRISAHQGPQVDSPHPQGQRRQDSMRTCEPEALKKKF-TRVRDAESPMK 215
           Q P VRG    H G QV SP+ QG+       TCE +   KKF T  R  +S  K
Sbjct: 525 QWPDVRGSQHGHTGRQVSSPYSQGE------STCETQTKLKKFQTGTRTKKSSKK 573


>gi|14149716 protein phosphatase 1, regulatory subunit 12C [Homo
           sapiens]
          Length = 782

 Score = 34.7 bits (78), Expect = 0.092
 Identities = 30/121 (24%), Positives = 48/121 (39%), Gaps = 6/121 (4%)

Query: 91  PHRGLADSSADLSCDSRVNSDYWRRRKARAARTLMASATQTASGG---PYTDADDELPAP 147
           P R  A+ +         +S +      +A    +A  T T S     P   ++   P P
Sbjct: 434 PERRTAEGAPGAGLQRSASSSWLEGTSTQAKELRLARITPTPSPKLPEPSVLSEVTKPPP 493

Query: 148 ALDRSSEPVQADEPQSPRVRGRISAHQGPQVDSPHPQGQRRQDSMRTCEPEALKKKFTRV 207
            L+ SS P +  EP+SP      +A   P  DS   + +RR   M   + E+  ++  R 
Sbjct: 494 CLENSSPPSRIPEPESPAKPNVPTASTAPPADS---RDRRRSYQMPVRDEESESQRKARS 550

Query: 208 R 208
           R
Sbjct: 551 R 551


>gi|124028519 hypothetical protein LOC158401 isoform 2 [Homo sapiens]
          Length = 1405

 Score = 33.5 bits (75), Expect = 0.21
 Identities = 25/91 (27%), Positives = 41/91 (45%), Gaps = 10/91 (10%)

Query: 53   LNGTSDTWYQEFKAIIREQQTRPI-------WTAEDKL---DGSLEDNPHRGLADSSADL 102
            L GT    +  FK  I EQ+  P         TA +KL    G+L  +  + L+D S  L
Sbjct: 1246 LEGTQSPLHWNFKKNIWEQENHPFNLQYGAQQTACNKLYSQKGNLFTDQQKCLSDESEGL 1305

Query: 103  SCDSRVNSDYWRRRKARAARTLMASATQTAS 133
            +C+S  +  +WR   +  +  L  ++   A+
Sbjct: 1306 TCESSKDETFWRELPSVPSLDLFRASDSNAN 1336


>gi|124028515 hypothetical protein LOC158401 isoform 1 [Homo sapiens]
          Length = 1444

 Score = 33.5 bits (75), Expect = 0.21
 Identities = 25/91 (27%), Positives = 41/91 (45%), Gaps = 10/91 (10%)

Query: 53   LNGTSDTWYQEFKAIIREQQTRPI-------WTAEDKL---DGSLEDNPHRGLADSSADL 102
            L GT    +  FK  I EQ+  P         TA +KL    G+L  +  + L+D S  L
Sbjct: 1285 LEGTQSPLHWNFKKNIWEQENHPFNLQYGAQQTACNKLYSQKGNLFTDQQKCLSDESEGL 1344

Query: 103  SCDSRVNSDYWRRRKARAARTLMASATQTAS 133
            +C+S  +  +WR   +  +  L  ++   A+
Sbjct: 1345 TCESSKDETFWRELPSVPSLDLFRASDSNAN 1375


>gi|170784854 PTPRF interacting protein, binding protein 2 (liprin
           beta 2) [Homo sapiens]
          Length = 876

 Score = 33.1 bits (74), Expect = 0.27
 Identities = 25/96 (26%), Positives = 37/96 (38%), Gaps = 9/96 (9%)

Query: 117 KARAARTLMASATQTASGGPYTDADDELPAPALDRSSEPVQADEPQSPRVRGRISAHQGP 176
           + RA + L  S     S       D   P P L+    P  A E + P + G++S     
Sbjct: 377 ETRAQKKLSCSLEDLRSESVDKCMDGNQPFPVLEPKDSPFLA-EHKYPTLPGKLSGAT-- 433

Query: 177 QVDSPHPQGQRRQDSMRTCEPEALKKKFTRVRDAES 212
                 P G+  +     C+P+A      R+RD ES
Sbjct: 434 ------PNGEAAKSPPTICQPDATGSSLLRLRDTES 463


>gi|7706589 GNAS complex locus NESP55 [Homo sapiens]
          Length = 245

 Score = 32.7 bits (73), Expect = 0.35
 Identities = 22/80 (27%), Positives = 30/80 (37%), Gaps = 3/80 (3%)

Query: 143 ELPAPALDRSSEPVQADEPQSPRVRGRISAHQGPQVDSPHPQGQRRQDSMRTCEPEALKK 202
           +L +P    S  P    EPQSPR    +        D    +  + +   R C+P   KK
Sbjct: 167 KLRSPDASPSRAPPSTQEPQSPREGEELKPEDKDPRDPEESKEPKEEKQRRRCKP---KK 223

Query: 203 KFTRVRDAESPMKMATTGVR 222
              R    ESP K     +R
Sbjct: 224 PTRRDASPESPSKKGPIPIR 243


>gi|195539337 S-adenosylhomocysteine hydrolase-like 2 isoform b
           [Homo sapiens]
          Length = 610

 Score = 32.3 bits (72), Expect = 0.46
 Identities = 34/139 (24%), Positives = 52/139 (37%), Gaps = 11/139 (7%)

Query: 125 MASATQTASGGPYTDADDELPAPALDRSSEPVQADEPQS--PRVRGRISAHQGPQVDSPH 182
           +++A   A   P    D E PAPA +R   P     P +      G++      +   PH
Sbjct: 33  LSTAAVGAMAPPAGGGDPEAPAPAAERPPVPGPGSGPAAALSPAAGKVPQASAMKRSDPH 92

Query: 183 PQGQRRQDSMR---------TCEPEALKKKFTRVRDAESPMKMATTGVRPLTCDLSQAAS 233
            Q QR +D            T  P  +KK     +  E   +    G R L+  +SQ+++
Sbjct: 93  HQHQRHRDGGEALVSPDGTVTEAPRTVKKIQFADQKQEFNKRPTKIGRRSLSRSISQSST 152

Query: 234 WSVLLLPSWGWDSVSCTEP 252
            S     S+   S   T P
Sbjct: 153 DSYSSAASYTDSSDDETSP 171


>gi|24308043 S-adenosylhomocysteine hydrolase-like 2 isoform a [Homo
           sapiens]
          Length = 611

 Score = 32.3 bits (72), Expect = 0.46
 Identities = 35/140 (25%), Positives = 53/140 (37%), Gaps = 12/140 (8%)

Query: 125 MASATQTASGGPYTDADDELPAPALDRSSEPVQADEPQS--PRVRGRISAHQGPQVDSPH 182
           +++A   A   P    D E PAPA +R   P     P +      G++      +   PH
Sbjct: 33  LSTAAVGAMAPPAGGGDPEAPAPAAERPPVPGPGSGPAAALSPAAGKVPQASAMKRSDPH 92

Query: 183 PQGQRRQDSMR---------TCEPEALKKKFTRVRDAESPMKMAT-TGVRPLTCDLSQAA 232
            Q QR +D            T  P  +KK+       +   K  T  G R L+  +SQ++
Sbjct: 93  HQHQRHRDGGEALVSPDGTVTEAPRTVKKQIQFADQKQEFNKRPTKIGRRSLSRSISQSS 152

Query: 233 SWSVLLLPSWGWDSVSCTEP 252
           + S     S+   S   T P
Sbjct: 153 TDSYSSAASYTDSSDDETSP 172


>gi|91208437 GEM interacting protein [Homo sapiens]
          Length = 970

 Score = 32.3 bits (72), Expect = 0.46
 Identities = 29/112 (25%), Positives = 45/112 (40%), Gaps = 15/112 (13%)

Query: 135 GPYTDADDELPAPALDRSSEP--VQADEPQSPRVRGRISAHQ-GPQVDSPHPQGQRRQDS 191
           GP T +    P P LD  S+P  + +D    P+    +  H      + P PQ  +R+D 
Sbjct: 778 GPLTTSSQP-PPPHLDPDSQPPVLASDPGPDPQHHSTLEQHPTATPTEIPTPQSDQREDV 836

Query: 192 MRTCEP-----------EALKKKFTRVRDAESPMKMATTGVRPLTCDLSQAA 232
               +            ++L    +R   +  P+K    GVRP+T  LS  A
Sbjct: 837 AEDTKDGGGEVSSQGPEDSLLGTQSRGHFSRQPVKYPRGGVRPVTHQLSSLA 888


>gi|22538461 nuclear receptor co-repressor 1 [Homo sapiens]
          Length = 2440

 Score = 32.0 bits (71), Expect = 0.60
 Identities = 23/80 (28%), Positives = 37/80 (46%), Gaps = 8/80 (10%)

Query: 80  EDKLDGSLEDNPHRGLADSSADLSCDSRVNSDYWRRRKARAARTLM--ASATQTASGGPY 137
           +DK+DG+ E+   R  A      + +S+       RRK R  R++   A+A   A+    
Sbjct: 551 KDKIDGTAEETEEREQATPRGRKTANSQ------GRRKGRITRSMTNEAAAASAAAAAAT 604

Query: 138 TDADDELPAPALDRSSEPVQ 157
            +    LP P    S+EPV+
Sbjct: 605 EEPPPPLPPPPEPISTEPVE 624


>gi|148539628 discs, large homolog 1 isoform 1 [Homo sapiens]
          Length = 904

 Score = 32.0 bits (71), Expect = 0.60
 Identities = 23/79 (29%), Positives = 38/79 (48%), Gaps = 8/79 (10%)

Query: 6   KRKRKFMDLHKELSWLAPASCRSTRRLYAQAQKLRKQSSHLFTATIPLNGTSDTWYQEFK 65
           K     M+++K L+          R+ + +A KL ++ +  FTA +    T +  Y + K
Sbjct: 833 KSMENIMEMNKRLTE------EQARKTFERAMKLEQEFTEHFTAIVQ-GDTLEDIYNQVK 885

Query: 66  AIIREQQTRPIWT-AEDKL 83
            II EQ    IW  A++KL
Sbjct: 886 QIIEEQSGSYIWVPAKEKL 904


>gi|148539578 discs, large homolog 1 isoform 2 [Homo sapiens]
          Length = 926

 Score = 32.0 bits (71), Expect = 0.60
 Identities = 23/79 (29%), Positives = 38/79 (48%), Gaps = 8/79 (10%)

Query: 6   KRKRKFMDLHKELSWLAPASCRSTRRLYAQAQKLRKQSSHLFTATIPLNGTSDTWYQEFK 65
           K     M+++K L+          R+ + +A KL ++ +  FTA +    T +  Y + K
Sbjct: 855 KSMENIMEMNKRLTE------EQARKTFERAMKLEQEFTEHFTAIVQ-GDTLEDIYNQVK 907

Query: 66  AIIREQQTRPIWT-AEDKL 83
            II EQ    IW  A++KL
Sbjct: 908 QIIEEQSGSYIWVPAKEKL 926


>gi|34365793 WNK lysine deficient protein kinase 4 [Homo sapiens]
          Length = 1243

 Score = 31.6 bits (70), Expect = 0.78
 Identities = 51/217 (23%), Positives = 75/217 (34%), Gaps = 31/217 (14%)

Query: 70  EQQTRPIWTAEDKLDGSLEDNPHRGLADSSADLSCDSRVNSDYWRRRKARAARTLMAS-A 128
           ++ T P+  AED L    E  P   L     D S +   +S     R   A  T  +S  
Sbjct: 749 KRDTGPMEAAEDTLSPQEEPAPLPALPVPLPDPSNEELQSSTSLEHRSWTAFSTSSSSPG 808

Query: 129 TQTASGGPYTDADDELPAPALDRSSEPVQADEPQSPRVRGRISAHQGPQVDS-------- 180
           T  + G P++      P P    +S P          +  ++S++  P   S        
Sbjct: 809 TPLSPGNPFSPGTPISPGPIFPITSPPCHPSPSPFSPISSQVSSNPSPHPTSSPLPFSSS 868

Query: 181 ----PHPQGQRRQDSMRTCEPEALKKKFTRVR-------DAESPMKMATTGVRPLTCDLS 229
               P P  Q    S+ T  P       ++V           S     +T   PL   LS
Sbjct: 869 TPEFPVPLSQCPWSSLPTTSPPTFSPTCSQVTLSSPFFPPCPSTSSFPSTTAAPL---LS 925

Query: 230 QAASWSV--------LLLPSWGWDSVSCTEPTTSPPS 258
            A+++S+        LL PS G  S S   P +  PS
Sbjct: 926 LASAFSLAVMTVAQSLLSPSPGLLSQSPPAPPSPLPS 962


>gi|124430752 kinesin family member 26B [Homo sapiens]
          Length = 2108

 Score = 31.6 bits (70), Expect = 0.78
 Identities = 33/92 (35%), Positives = 41/92 (44%), Gaps = 12/92 (13%)

Query: 114  RRRKARAARTLMASATQ-TASGGPYTDADD-ELPAPALDRSSEPVQA------DEPQSPR 165
            R  +A  A  L  S  +   S G  T+ +  ELPA  + RS  PV A        P SPR
Sbjct: 964  RLSQAAGASPLSESDKEDNGSEGQLTNREGPELPASKMQRSHSPVPAAAPAHSPSPASPR 1023

Query: 166  -VRGRISAHQ-GPQVDSPHPQGQRRQDSMRTC 195
             V G  S H   P V SP  Q  R  +S+ +C
Sbjct: 1024 SVPGSSSQHSASPLVQSPSLQSSR--ESLNSC 1053


>gi|169206171 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 466

 Score = 31.2 bits (69), Expect = 1.0
 Identities = 28/105 (26%), Positives = 44/105 (41%), Gaps = 13/105 (12%)

Query: 114 RRRKARAARTLMASATQTASGGPYTDADDELPAPALDRS-SEPVQADEPQSPRVR----- 167
           R+R+   ART +       + GP  D     PAP+  +S   P  A   + P  +     
Sbjct: 94  RQRRTSRARTALWGRRSRRAAGPGLDCAGSAPAPSGAQSCGGPAPASALRRPLTQWDASG 153

Query: 168 -GRISAHQGPQVDSP-----HPQGQRRQDSMRTCEPEALKKKFTR 206
            G  ++H GP+  +P        G RR+  +  C P  L+K  +R
Sbjct: 154 GGGRASHSGPRAGTPGGGRSSRAGARRKTPLSLC-PLKLRKGSSR 197


>gi|239751180 PREDICTED: hypothetical protein XP_002347740 [Homo
           sapiens]
          Length = 331

 Score = 31.2 bits (69), Expect = 1.0
 Identities = 30/101 (29%), Positives = 47/101 (46%), Gaps = 9/101 (8%)

Query: 122 RTLMASATQTASGGPYTDADDELPAPALDRSSEPVQADEPQSPRVRGRISAHQGPQVDSP 181
           R  +A+  +  SGG   + D E  + AL    E      P +P ++G   A Q PQ  +P
Sbjct: 92  RGALAAVLKFPSGGRQNEGDSENVSAALALGEEARGPPSPLNP-LQGISQAPQRPQ--AP 148

Query: 182 HPQGQRRQDSMRTCEPEALKKKFTRVRDAESPMKMATTGVR 222
            P+G   Q     C    ++++ TRV  A S  + +TT +R
Sbjct: 149 GPRGAAEQSQGSPC----VRQEKTRVSGALS--RPSTTELR 183


>gi|239745668 PREDICTED: hypothetical protein XP_002343538 [Homo
           sapiens]
          Length = 305

 Score = 31.2 bits (69), Expect = 1.0
 Identities = 30/101 (29%), Positives = 47/101 (46%), Gaps = 9/101 (8%)

Query: 122 RTLMASATQTASGGPYTDADDELPAPALDRSSEPVQADEPQSPRVRGRISAHQGPQVDSP 181
           R  +A+  +  SGG   + D E  + AL    E      P +P ++G   A Q PQ  +P
Sbjct: 66  RGALAAVLKFPSGGRQNEGDSENVSAALALGEEARGPPSPLNP-LQGISQAPQRPQ--AP 122

Query: 182 HPQGQRRQDSMRTCEPEALKKKFTRVRDAESPMKMATTGVR 222
            P+G   Q     C    ++++ TRV  A S  + +TT +R
Sbjct: 123 GPRGAAEQSQGSPC----VRQEKTRVSGALS--RPSTTELR 157


>gi|239745414 PREDICTED: NPIP-like protein 2 isoform 2 [Homo
           sapiens]
          Length = 380

 Score = 31.2 bits (69), Expect = 1.0
 Identities = 20/78 (25%), Positives = 39/78 (50%), Gaps = 12/78 (15%)

Query: 140 ADDELPAPALDRSSEPVQADEPQSPRVRGRISAHQGP---------QVDSPHPQGQRRQD 190
           ADD L  P L  +++  +A++P  P+ R R +  + P         +V+SP    +RR  
Sbjct: 299 ADDNLKTPPL--ATQEAEAEKPPKPK-RWRAAEMESPPEPKRRRAAEVESPPEPKRRRAA 355

Query: 191 SMRTCEPEALKKKFTRVR 208
            +    PE  +++ +++R
Sbjct: 356 EVEPSSPEPKRRRLSKLR 373


>gi|169206489 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 564

 Score = 30.8 bits (68), Expect = 1.3
 Identities = 28/105 (26%), Positives = 43/105 (40%), Gaps = 13/105 (12%)

Query: 114 RRRKARAARTLMASATQTASGGPYTDADDELPAPALDRS-SEPVQADEPQSPRVR----- 167
           R+R+   ART +       + GP  D     PAP+  +S   P  A   + P  +     
Sbjct: 94  RQRRTSRARTALWGRRSRRAAGPGLDCAGSAPAPSGAQSCGGPAPASALRRPLTQWDASG 153

Query: 168 -GRISAHQGPQVDSP-----HPQGQRRQDSMRTCEPEALKKKFTR 206
            G   +H GP+  +P        G RR+  +  C P  L+K  +R
Sbjct: 154 GGGRGSHSGPRAGTPGGGRSSRAGARRKTPLSLC-PLKLRKGSSR 197


>gi|169162152 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 520

 Score = 30.8 bits (68), Expect = 1.3
 Identities = 20/74 (27%), Positives = 30/74 (40%), Gaps = 3/74 (4%)

Query: 115 RRKARAARTLMASATQTASGGPYTDADDELPAPALDRSSEPVQADEPQSPRVRGRISAHQ 174
           + + R+  +   S T+    G + +     P P   R +       P+ P   GR+SA  
Sbjct: 105 QERGRSKPSPPVSGTRRGKTGQWKEGRGSHPTPEPQRLAARRWLHSPREPTPPGRLSA-- 162

Query: 175 GPQVDSPHPQGQRR 188
            P    PHPQ  RR
Sbjct: 163 -PPRHGPHPQSFRR 175


>gi|169205942 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 564

 Score = 30.8 bits (68), Expect = 1.3
 Identities = 28/105 (26%), Positives = 43/105 (40%), Gaps = 13/105 (12%)

Query: 114 RRRKARAARTLMASATQTASGGPYTDADDELPAPALDRS-SEPVQADEPQSPRVR----- 167
           R+R+   ART +       + GP  D     PAP+  +S   P  A   + P  +     
Sbjct: 94  RQRRTSRARTALWGRRSRRAAGPGLDCAGSAPAPSGAQSCGGPAPASALRRPLTQWDASG 153

Query: 168 -GRISAHQGPQVDSP-----HPQGQRRQDSMRTCEPEALKKKFTR 206
            G   +H GP+  +P        G RR+  +  C P  L+K  +R
Sbjct: 154 GGGRGSHSGPRAGTPGGGRSSRAGARRKTPLSLC-PLKLRKGSSR 197


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.314    0.126    0.388 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,705,517
Number of Sequences: 37866
Number of extensions: 539917
Number of successful extensions: 2182
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 65
Number of HSP's that attempted gapping in prelim test: 2134
Number of HSP's gapped (non-prelim): 105
length of query: 274
length of database: 18,247,518
effective HSP length: 101
effective length of query: 173
effective length of database: 14,423,052
effective search space: 2495187996
effective search space used: 2495187996
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 61 (28.1 bits)

Search results were obtained with NCBI BLAST and RefSeq entries.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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