Guide to the Human Genome
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Name: UQCRC1 Sequence: fasta or formatted (480aa) NCBI GI: 46593007
Description:

ubiquinol-cytochrome c reductase core protein I

Referenced in:

Oxidative Phosphorylation

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            11.5         55           3
 C cysteine            2.5         12           1
 D aspartate           4.8         23           2
 E glutamate           6.5         31           1
 F phenylalanine       3.1         15           1
 G glycine             7.1         34           3
 H histidine           2.7         13           1
 I isoleucine          4.2         20           2
 K lysine              3.1         15           1
 L leucine             9.8         47           2
 M methionine          2.1         10           2
 N asparagine          3.1         15           2
 P proline             4.4         21           1
 Q glutamine           4.4         21           2
 R arginine            6.5         31           2
 S serine              6.9         33           2
 T threonine           5.6         27           2
 V valine              7.3         35           2
 W tryptophan          1.2          6           1
 Y tyrosine            3.3         16           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   ubiquinol-cytochrome c reductase core protein I [Hom... 
PMPCB                 0.552   mitochondrial processing peptidase beta subunit prec...
PMPCA                 0.150   peptidase (mitochondrial processing) alpha 
UQCRC2                0.080   ubiquinol-cytochrome c reductase core protein II [Ho...
NRD1                  0.020   nardilysin isoform b 
IDE                   0.019   insulin-degrading enzyme 
NRD1                  0.018   nardilysin isoform a 
GOLGB1                0.007   golgi autoantigen, golgin subfamily b, macrogolgin ...
TPR                   0.006   nuclear pore complex-associated protein TPR 
PALM2                 0.006   paralemmin 2 isoform b 
PALM2                 0.005   paralemmin 2 isoform a 
KIAA0754              0.005   hypothetical protein LOC643314 
CHRNA2                0.005   cholinergic receptor, nicotinic, alpha polypeptide ...
PALM2-AKAP2           0.005   PALM2-AKAP2 protein isoform 2 
PALM2-AKAP2           0.005   PALM2-AKAP2 protein isoform 1 
DNAH8                 0.004   dynein, axonemal, heavy polypeptide 8 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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