Guide to the Human Genome
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Name: LOC100288053 Sequence: fasta or formatted (97aa) NCBI GI: 239747040
Description:

PREDICTED: hypothetical protein XP_002344257

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             0.0          0           0
 C cysteine            3.1          3           1
 D aspartate           4.1          4           1
 E glutamate          14.4         14           1
 F phenylalanine       1.0          1           1
 G glycine            11.3         11           1
 H histidine           1.0          1           1
 I isoleucine          7.2          7           1
 K lysine              5.2          5           1
 L leucine             6.2          6           1
 M methionine          7.2          7           1
 N asparagine         13.4         13           1
 P proline             1.0          1           1
 Q glutamine           2.1          2           1
 R arginine            2.1          2           1
 S serine              2.1          2           1
 T threonine           1.0          1           1
 V valine              2.1          2           1
 W tryptophan         14.4         14           1
 Y tyrosine            1.0          1           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002344257 
LOC100288402          0.976   PREDICTED: hypothetical protein XP_002344267 
LOC100288157          0.976   PREDICTED: hypothetical protein XP_002344260 
LOC100288526          0.967   PREDICTED: hypothetical protein XP_002344271 
LOC100288329          0.967   PREDICTED: hypothetical protein XP_002344265 
LOC100288124          0.967   PREDICTED: hypothetical protein XP_002344259 
LOC100288025          0.967   PREDICTED: hypothetical protein XP_002344256 
LOC100288220          0.952   PREDICTED: hypothetical protein XP_002344262 
LOC100288188          0.948   PREDICTED: hypothetical protein XP_002344261 
LOC100288468          0.948   PREDICTED: hypothetical protein XP_002344269 
LOC100288499          0.905   PREDICTED: hypothetical protein XP_002344270 
LOC100288435          0.195   PREDICTED: hypothetical protein XP_002344268 
LOC100288595          0.190   PREDICTED: hypothetical protein XP_002344273 
LOC100288561          0.190   PREDICTED: hypothetical protein XP_002344272 
LOC100288363          0.190   PREDICTED: hypothetical protein XP_002344266 
LOC100288293          0.190   PREDICTED: hypothetical protein XP_002344264 
LOC100288259          0.190   PREDICTED: hypothetical protein XP_002344263 
LOC100288085          0.190   PREDICTED: hypothetical protein XP_002344258 
LOC100293888          0.052   PREDICTED: similar to Nanog homeobox isoform 2 [Hom...
LOC100292655          0.038   PREDICTED: similar to armadillo repeat containing, ...
LOC642424             0.038   PREDICTED: similar to hCG1742442 
NANOG                 0.033   Nanog homeobox 
LOC100293888          0.033   PREDICTED: similar to Nanog homeobox isoform 1 [Hom...
TAS1R1                0.014   sweet taste receptor T1r isoform b 
TAS1R1                0.014   sweet taste receptor T1r isoform d 
TAS1R1                0.014   sweet taste receptor T1r isoform c 
UTRN                  0.014   utrophin 
CSTF2                 0.010   cleavage stimulation factor subunit 2 
LOC100130348          0.010   PREDICTED: hypothetical protein LOC100130348 
C14orf179             0.010   hypothetical protein LOC112752 isoform 2 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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