Guide to the Human Genome
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Name: LOC100288595 Sequence: fasta or formatted (134aa) NCBI GI: 239747072
Description:

PREDICTED: hypothetical protein XP_002344273

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             1.5          2           1
 C cysteine            3.0          4           1
 D aspartate           0.7          1           1
 E glutamate          13.4         18           2
 F phenylalanine       0.0          0           0
 G glycine            11.9         16           1
 H histidine           1.5          2           1
 I isoleucine          3.7          5           1
 K lysine              6.0          8           1
 L leucine             3.0          4           1
 M methionine         11.9         16           1
 N asparagine         15.7         21           1
 P proline             1.5          2           1
 Q glutamine           2.2          3           1
 R arginine            5.2          7           1
 S serine              4.5          6           1
 T threonine           3.7          5           1
 V valine              5.2          7           1
 W tryptophan          3.0          4           1
 Y tyrosine            2.2          3           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002344273 
LOC100288561          1.000   PREDICTED: hypothetical protein XP_002344272 
LOC100288259          1.000   PREDICTED: hypothetical protein XP_002344263 
LOC100288085          1.000   PREDICTED: hypothetical protein XP_002344258 
LOC100288435          0.989   PREDICTED: hypothetical protein XP_002344268 
LOC100288363          0.951   PREDICTED: hypothetical protein XP_002344266 
LOC100288293          0.936   PREDICTED: hypothetical protein XP_002344264 
LOC100288499          0.167   PREDICTED: hypothetical protein XP_002344270 
LOC100288526          0.159   PREDICTED: hypothetical protein XP_002344271 
LOC100288329          0.159   PREDICTED: hypothetical protein XP_002344265 
LOC100288188          0.159   PREDICTED: hypothetical protein XP_002344261 
LOC100288124          0.159   PREDICTED: hypothetical protein XP_002344259 
LOC100288025          0.159   PREDICTED: hypothetical protein XP_002344256 
LOC100288402          0.155   PREDICTED: hypothetical protein XP_002344267 
LOC100288157          0.155   PREDICTED: hypothetical protein XP_002344260 
LOC100288220          0.152   PREDICTED: hypothetical protein XP_002344262 
LOC100288053          0.152   PREDICTED: hypothetical protein XP_002344257 
LOC100288468          0.152   PREDICTED: hypothetical protein XP_002344269 
CSTF2                 0.080   cleavage stimulation factor subunit 2 
CSTF2T                0.064   cleavage stimulation factor, 3' pre-RNA, subunit 2, ...
LARP1B                0.042   La ribonucleoprotein domain family member 2 isoform ...
LARP1B                0.042   La ribonucleoprotein domain family member 2 isoform ...
LARP1B                0.042   La ribonucleoprotein domain family member 2 isoform ...
FAM113B               0.023   hypothetical protein LOC91523 
LOC100290395          0.019   PREDICTED: hypothetical protein XP_002346998 
LOC642424             0.019   PREDICTED: similar to hCG1742442 
QRICH2                0.015   glutamine rich 2 
ENAH                  0.011   enabled homolog isoform a 
ENAH                  0.011   enabled homolog isoform b 
DMTF1                 0.011   cyclin D binding myb-like transcription factor 1 is...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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