Search of human proteins with 239747031

Search of human proteins with 239747031

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|239747031 PREDICTED: hypothetical protein XP_002344244 [Homo
sapiens]
         (296 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|239757979 PREDICTED: similar to chondroitin sulfate proteogly...   599   e-171
gi|169217335 PREDICTED: similar to chondroitin sulfate proteogly...   599   e-171
gi|239747036 PREDICTED: hypothetical protein XP_002344245 [Homo ...   599   e-171
gi|239747031 PREDICTED: hypothetical protein XP_002344244 [Homo ...   599   e-171
gi|47419930 chondroitin sulfate proteoglycan 4 [Homo sapiens]         471   e-133
gi|21166380 neurexin 2 isoform alpha-2 precursor [Homo sapiens]        51   1e-06
gi|14211536 neurexin 2 isoform alpha-1 precursor [Homo sapiens]        45   8e-05
gi|14149613 neurexin 1 isoform alpha1 precursor [Homo sapiens]         44   2e-04
gi|208609951 neurexin 1 isoform alpha2 precursor [Homo sapiens]        38   0.009
gi|119466532 laminin alpha 2 subunit isoform b precursor [Homo s...    37   0.021
gi|28559088 laminin alpha 2 subunit isoform a precursor [Homo sa...    37   0.021
gi|21362098 required for meiotic nuclear division 5 homolog B [H...    34   0.13 
gi|188528675 slit homolog 1 [Homo sapiens]                             33   0.30 
gi|21070969 neurexin 3 isoform 1 precursor [Homo sapiens]              33   0.30 
gi|11321571 slit homolog 3 [Homo sapiens]                              33   0.39 
gi|38788416 laminin, alpha 1 precursor [Homo sapiens]                  31   1.1  
gi|4505463 contactin associated protein 1 precursor [Homo sapiens]     31   1.5  
gi|188536110 leucine rich repeat neuronal 4 [Homo sapiens]             30   1.9  
gi|54873613 agrin [Homo sapiens]                                       30   2.5  
gi|116284404 cell recognition protein CASPR4 isoform 1 [Homo sap...    30   2.5  
gi|167900484 pentraxin 3 [Homo sapiens]                                29   4.3  
gi|148664242 cell recognition protein CASPR4 isoform 2 [Homo sap...    29   4.3  
gi|221219020 NYD-SP11 protein [Homo sapiens]                           29   5.7  
gi|126012571 heparan sulfate proteoglycan 2 [Homo sapiens]             29   5.7  

>gi|239757979 PREDICTED: similar to chondroitin sulfate proteoglycan
           4 [Homo sapiens]
          Length = 296

 Score =  599 bits (1544), Expect = e-171
 Identities = 296/296 (100%), Positives = 296/296 (100%)

Query: 1   MALTDIDLQLQFSTSQPEALLLLAAGPADHLLLQLYSGHLQVRVVLGQEELRLQIPAEML 60
           MALTDIDLQLQFSTSQPEALLLLAAGPADHLLLQLYSGHLQVRVVLGQEELRLQIPAEML
Sbjct: 1   MALTDIDLQLQFSTSQPEALLLLAAGPADHLLLQLYSGHLQVRVVLGQEELRLQIPAEML 60

Query: 61  LSDSIPYTTVLTVSEGWPTLSVNGFLNASSVVLGAPLEVPYGLFVGNTGSLGLPYLRGTS 120
           LSDSIPYTTVLTVSEGWPTLSVNGFLNASSVVLGAPLEVPYGLFVGNTGSLGLPYLRGTS
Sbjct: 61  LSDSIPYTTVLTVSEGWPTLSVNGFLNASSVVLGAPLEVPYGLFVGNTGSLGLPYLRGTS 120

Query: 121 HPLRGCLHAATLNGHSLLRPLTPDMHEGCAEEFSTSDDVALGFSGPHSLAAFPAWGTQNK 180
           HPLRGCLHAATLNGHSLLRPLTPDMHEGCAEEFSTSDDVALGFSGPHSLAAFPAWGTQNK
Sbjct: 121 HPLRGCLHAATLNGHSLLRPLTPDMHEGCAEEFSTSDDVALGFSGPHSLAAFPAWGTQNK 180

Query: 181 GTLELALTTQIWQAPLTFQAAGWHGDFIHVDIFEGHLWFMVEKGQGTVLLLNSVLVADVQ 240
           GTLELALTTQIWQAPLTFQAAGWHGDFIHVDIFEGHLWFMVEKGQGTVLLLNSVLVADVQ
Sbjct: 181 GTLELALTTQIWQAPLTFQAAGWHGDFIHVDIFEGHLWFMVEKGQGTVLLLNSVLVADVQ 240

Query: 241 TLKVSIHINTHQLEISMDQYPTRTLNRGVLSCLEPCDSLLLGELVAEASHPLQEHH 296
           TLKVSIHINTHQLEISMDQYPTRTLNRGVLSCLEPCDSLLLGELVAEASHPLQEHH
Sbjct: 241 TLKVSIHINTHQLEISMDQYPTRTLNRGVLSCLEPCDSLLLGELVAEASHPLQEHH 296


>gi|169217335 PREDICTED: similar to chondroitin sulfate proteoglycan
           4 [Homo sapiens]
          Length = 296

 Score =  599 bits (1544), Expect = e-171
 Identities = 296/296 (100%), Positives = 296/296 (100%)

Query: 1   MALTDIDLQLQFSTSQPEALLLLAAGPADHLLLQLYSGHLQVRVVLGQEELRLQIPAEML 60
           MALTDIDLQLQFSTSQPEALLLLAAGPADHLLLQLYSGHLQVRVVLGQEELRLQIPAEML
Sbjct: 1   MALTDIDLQLQFSTSQPEALLLLAAGPADHLLLQLYSGHLQVRVVLGQEELRLQIPAEML 60

Query: 61  LSDSIPYTTVLTVSEGWPTLSVNGFLNASSVVLGAPLEVPYGLFVGNTGSLGLPYLRGTS 120
           LSDSIPYTTVLTVSEGWPTLSVNGFLNASSVVLGAPLEVPYGLFVGNTGSLGLPYLRGTS
Sbjct: 61  LSDSIPYTTVLTVSEGWPTLSVNGFLNASSVVLGAPLEVPYGLFVGNTGSLGLPYLRGTS 120

Query: 121 HPLRGCLHAATLNGHSLLRPLTPDMHEGCAEEFSTSDDVALGFSGPHSLAAFPAWGTQNK 180
           HPLRGCLHAATLNGHSLLRPLTPDMHEGCAEEFSTSDDVALGFSGPHSLAAFPAWGTQNK
Sbjct: 121 HPLRGCLHAATLNGHSLLRPLTPDMHEGCAEEFSTSDDVALGFSGPHSLAAFPAWGTQNK 180

Query: 181 GTLELALTTQIWQAPLTFQAAGWHGDFIHVDIFEGHLWFMVEKGQGTVLLLNSVLVADVQ 240
           GTLELALTTQIWQAPLTFQAAGWHGDFIHVDIFEGHLWFMVEKGQGTVLLLNSVLVADVQ
Sbjct: 181 GTLELALTTQIWQAPLTFQAAGWHGDFIHVDIFEGHLWFMVEKGQGTVLLLNSVLVADVQ 240

Query: 241 TLKVSIHINTHQLEISMDQYPTRTLNRGVLSCLEPCDSLLLGELVAEASHPLQEHH 296
           TLKVSIHINTHQLEISMDQYPTRTLNRGVLSCLEPCDSLLLGELVAEASHPLQEHH
Sbjct: 241 TLKVSIHINTHQLEISMDQYPTRTLNRGVLSCLEPCDSLLLGELVAEASHPLQEHH 296


>gi|239747036 PREDICTED: hypothetical protein XP_002344245 [Homo
           sapiens]
          Length = 296

 Score =  599 bits (1544), Expect = e-171
 Identities = 296/296 (100%), Positives = 296/296 (100%)

Query: 1   MALTDIDLQLQFSTSQPEALLLLAAGPADHLLLQLYSGHLQVRVVLGQEELRLQIPAEML 60
           MALTDIDLQLQFSTSQPEALLLLAAGPADHLLLQLYSGHLQVRVVLGQEELRLQIPAEML
Sbjct: 1   MALTDIDLQLQFSTSQPEALLLLAAGPADHLLLQLYSGHLQVRVVLGQEELRLQIPAEML 60

Query: 61  LSDSIPYTTVLTVSEGWPTLSVNGFLNASSVVLGAPLEVPYGLFVGNTGSLGLPYLRGTS 120
           LSDSIPYTTVLTVSEGWPTLSVNGFLNASSVVLGAPLEVPYGLFVGNTGSLGLPYLRGTS
Sbjct: 61  LSDSIPYTTVLTVSEGWPTLSVNGFLNASSVVLGAPLEVPYGLFVGNTGSLGLPYLRGTS 120

Query: 121 HPLRGCLHAATLNGHSLLRPLTPDMHEGCAEEFSTSDDVALGFSGPHSLAAFPAWGTQNK 180
           HPLRGCLHAATLNGHSLLRPLTPDMHEGCAEEFSTSDDVALGFSGPHSLAAFPAWGTQNK
Sbjct: 121 HPLRGCLHAATLNGHSLLRPLTPDMHEGCAEEFSTSDDVALGFSGPHSLAAFPAWGTQNK 180

Query: 181 GTLELALTTQIWQAPLTFQAAGWHGDFIHVDIFEGHLWFMVEKGQGTVLLLNSVLVADVQ 240
           GTLELALTTQIWQAPLTFQAAGWHGDFIHVDIFEGHLWFMVEKGQGTVLLLNSVLVADVQ
Sbjct: 181 GTLELALTTQIWQAPLTFQAAGWHGDFIHVDIFEGHLWFMVEKGQGTVLLLNSVLVADVQ 240

Query: 241 TLKVSIHINTHQLEISMDQYPTRTLNRGVLSCLEPCDSLLLGELVAEASHPLQEHH 296
           TLKVSIHINTHQLEISMDQYPTRTLNRGVLSCLEPCDSLLLGELVAEASHPLQEHH
Sbjct: 241 TLKVSIHINTHQLEISMDQYPTRTLNRGVLSCLEPCDSLLLGELVAEASHPLQEHH 296


>gi|239747031 PREDICTED: hypothetical protein XP_002344244 [Homo
           sapiens]
          Length = 296

 Score =  599 bits (1544), Expect = e-171
 Identities = 296/296 (100%), Positives = 296/296 (100%)

Query: 1   MALTDIDLQLQFSTSQPEALLLLAAGPADHLLLQLYSGHLQVRVVLGQEELRLQIPAEML 60
           MALTDIDLQLQFSTSQPEALLLLAAGPADHLLLQLYSGHLQVRVVLGQEELRLQIPAEML
Sbjct: 1   MALTDIDLQLQFSTSQPEALLLLAAGPADHLLLQLYSGHLQVRVVLGQEELRLQIPAEML 60

Query: 61  LSDSIPYTTVLTVSEGWPTLSVNGFLNASSVVLGAPLEVPYGLFVGNTGSLGLPYLRGTS 120
           LSDSIPYTTVLTVSEGWPTLSVNGFLNASSVVLGAPLEVPYGLFVGNTGSLGLPYLRGTS
Sbjct: 61  LSDSIPYTTVLTVSEGWPTLSVNGFLNASSVVLGAPLEVPYGLFVGNTGSLGLPYLRGTS 120

Query: 121 HPLRGCLHAATLNGHSLLRPLTPDMHEGCAEEFSTSDDVALGFSGPHSLAAFPAWGTQNK 180
           HPLRGCLHAATLNGHSLLRPLTPDMHEGCAEEFSTSDDVALGFSGPHSLAAFPAWGTQNK
Sbjct: 121 HPLRGCLHAATLNGHSLLRPLTPDMHEGCAEEFSTSDDVALGFSGPHSLAAFPAWGTQNK 180

Query: 181 GTLELALTTQIWQAPLTFQAAGWHGDFIHVDIFEGHLWFMVEKGQGTVLLLNSVLVADVQ 240
           GTLELALTTQIWQAPLTFQAAGWHGDFIHVDIFEGHLWFMVEKGQGTVLLLNSVLVADVQ
Sbjct: 181 GTLELALTTQIWQAPLTFQAAGWHGDFIHVDIFEGHLWFMVEKGQGTVLLLNSVLVADVQ 240

Query: 241 TLKVSIHINTHQLEISMDQYPTRTLNRGVLSCLEPCDSLLLGELVAEASHPLQEHH 296
           TLKVSIHINTHQLEISMDQYPTRTLNRGVLSCLEPCDSLLLGELVAEASHPLQEHH
Sbjct: 241 TLKVSIHINTHQLEISMDQYPTRTLNRGVLSCLEPCDSLLLGELVAEASHPLQEHH 296


>gi|47419930 chondroitin sulfate proteoglycan 4 [Homo sapiens]
          Length = 2322

 Score =  471 bits (1211), Expect = e-133
 Identities = 244/294 (82%), Positives = 257/294 (87%)

Query: 2   ALTDIDLQLQFSTSQPEALLLLAAGPADHLLLQLYSGHLQVRVVLGQEELRLQIPAEMLL 61
           ALTDIDLQLQFSTSQPEALLLLAAGPADHLLLQLYSG LQVR+VLGQEELRLQ PAE LL
Sbjct: 45  ALTDIDLQLQFSTSQPEALLLLAAGPADHLLLQLYSGRLQVRLVLGQEELRLQTPAETLL 104

Query: 62  SDSIPYTTVLTVSEGWPTLSVNGFLNASSVVLGAPLEVPYGLFVGNTGSLGLPYLRGTSH 121
           SDSIP+T VLTV EGW TLSV+GFLNASS V GAPLEVPYGLFVG TG+LGLPYLRGTS 
Sbjct: 105 SDSIPHTVVLTVVEGWATLSVDGFLNASSAVPGAPLEVPYGLFVGGTGTLGLPYLRGTSR 164

Query: 122 PLRGCLHAATLNGHSLLRPLTPDMHEGCAEEFSTSDDVALGFSGPHSLAAFPAWGTQNKG 181
           PLRGCLHAATLNG SLLRPLTPD+HEGCAEEFS SDDVALGFSGPHSLAAFPAWGTQ++G
Sbjct: 165 PLRGCLHAATLNGRSLLRPLTPDVHEGCAEEFSASDDVALGFSGPHSLAAFPAWGTQDEG 224

Query: 182 TLELALTTQIWQAPLTFQAAGWHGDFIHVDIFEGHLWFMVEKGQGTVLLLNSVLVADVQT 241
           TLE  LTTQ  QAPL FQA G  GDFI+VDIFEGHL  +VEKGQGTVLL NSV VAD Q 
Sbjct: 225 TLEFTLTTQSRQAPLAFQAGGRRGDFIYVDIFEGHLRAVVEKGQGTVLLHNSVPVADGQP 284

Query: 242 LKVSIHINTHQLEISMDQYPTRTLNRGVLSCLEPCDSLLLGELVAEASHPLQEH 295
            +VS+HIN H+LEIS+DQYPT T NRGVLS LEP  SLLLG L AEAS  LQEH
Sbjct: 285 HEVSVHINAHRLEISVDQYPTHTSNRGVLSYLEPRGSLLLGGLDAEASRHLQEH 338



 Score = 34.3 bits (77), Expect = 0.13
 Identities = 45/183 (24%), Positives = 78/183 (42%), Gaps = 17/183 (9%)

Query: 8   LQLQFSTSQPEALLLLAAGP--ADHLLLQLYSGHLQVRVVLGQEELRLQIPAEMLLSDSI 65
           L+   +T   +A L   AG    D + + ++ GHL+  V  GQ  + L     + ++D  
Sbjct: 226 LEFTLTTQSRQAPLAFQAGGRRGDFIYVDIFEGHLRAVVEKGQGTVLLH--NSVPVADGQ 283

Query: 66  PYTTVLTVSEGWPTLSVNGF-LNASSVVLGAPLEVPYGLFVGNTGSLGLPYLR------- 117
           P+   + ++     +SV+ +  + S+  + + LE    L +G   +    +L+       
Sbjct: 284 PHEVSVHINAHRLEISVDQYPTHTSNRGVLSYLEPRGSLLLGGLDAEASRHLQEHRLGLT 343

Query: 118 --GTSHPLRGCLHAATLNGHSL-LRP--LTPDMHEGCAEEFSTSDDVALGFSGPHSLAAF 172
              T+  L GC+   ++NG    LR   LT +M  GC  E    +D A G     S  A 
Sbjct: 344 PEATNASLLGCMEDLSVNGQRRGLREALLTRNMAAGCRLEEEEYEDDAYGHYEAFSTLAP 403

Query: 173 PAW 175
            AW
Sbjct: 404 EAW 406


>gi|21166380 neurexin 2 isoform alpha-2 precursor [Homo sapiens]
          Length = 1642

 Score = 50.8 bits (120), Expect = 1e-06
 Identities = 72/312 (23%), Positives = 116/312 (37%), Gaps = 34/312 (10%)

Query: 7   DLQLQFSTSQPEALLLLAAGPADHLLLQLYSGHLQVRVVLGQEELRLQI-PAEMLLSDSI 65
           ++ L F T Q   L+L     AD++ L L SG + + + LG       + P     +D+ 
Sbjct: 289 EITLAFRTLQRNGLMLHTGKSADYVNLSLKSGAVWLVINLGSGAFEALVEPVNGKFNDNA 348

Query: 66  PYTTVLT--------VSEGWPTLSVNGFLNASSVVLGAPLEVPYGLFVGNTGSLGLPYLR 117
            +   +T        +     T+SV+G L  +         +    F    GS     L 
Sbjct: 349 WHDVRVTRNLRQHAGIGHAMVTISVDGILTTTGYTQEDYTMLGSDDFFYIGGSPNTADLP 408

Query: 118 GT--SHPLRGCLHAATLNGHSLLRPLTPDMHEGCAE-------EFSTSDDVALG---FSG 165
           G+  S+   GCL       +     L+    EG  +        F   D  AL    F  
Sbjct: 409 GSPVSNNFMGCLKDVVYKNNDFKLELSRLAKEGDPKMKLQGDLSFRCEDVAALDPVTFES 468

Query: 166 PHSLAAFPAWGTQNKGTLELALTTQIWQAPLTFQ-------AAGWHG-----DFIHVDIF 213
           P +  A P W  +  G++ L   T      L F         AG H      D+  +++ 
Sbjct: 469 PEAFVALPRWSAKRTGSISLDFRTTEPNGLLLFSQGRRAGGGAGSHSSAQRADYFAMELL 528

Query: 214 EGHLWFMVEKGQGTV-LLLNSVLVADVQTLKVSIHINTHQLEISMDQYPTRTLNRGVLSC 272
           +GHL+ +++ G G + L  +S  V D +   V    +  +  IS++   T  L  G    
Sbjct: 529 DGHLYLLLDMGSGGIKLRASSRKVNDGEWCHVDFQRDGRKGSISVNSRSTPFLATGDSEI 588

Query: 273 LEPCDSLLLGEL 284
           L+    L LG L
Sbjct: 589 LDLESELYLGGL 600



 Score = 34.3 bits (77), Expect = 0.13
 Identities = 32/138 (23%), Positives = 61/138 (44%), Gaps = 5/138 (3%)

Query: 2    ALTDIDLQLQFSTSQPEALLLLAAGPA-DHLLLQLYSGHLQVRVVLGQEELRLQIPAEML 60
            A   + L  QF T+ P+ LLL  +G   D ++++L  G++     LG     ++  ++  
Sbjct: 896  AYASMHLFFQFKTTAPDGLLLFNSGNGNDFIVIELVKGYIHYVFDLGNGPSLMKGNSDKP 955

Query: 61   LSDSIPYTTVLTVSEG-WPTLSVNGFLNASSVVLGAPLEVPYGLFVGNTGS---LGLPYL 116
            ++D+  +  V++   G   TL ++             L++   L++G         LP L
Sbjct: 956  VNDNQWHNVVVSRDPGNVHTLKIDSRTVTQHSNGARNLDLKGELYIGGLSKNMFSNLPKL 1015

Query: 117  RGTSHPLRGCLHAATLNG 134
              +    +GCL +  LNG
Sbjct: 1016 VASRDGFQGCLASVDLNG 1033


>gi|14211536 neurexin 2 isoform alpha-1 precursor [Homo sapiens]
          Length = 1712

 Score = 45.1 bits (105), Expect = 8e-05
 Identities = 74/319 (23%), Positives = 116/319 (36%), Gaps = 41/319 (12%)

Query: 7   DLQLQFSTSQPEALLLLAAGPADHLLLQLYSGHLQVRVVLGQEELRLQI-PAEMLLSDS- 64
           ++ L F T Q   L+L     AD++ L L SG + + + LG       + P     +D+ 
Sbjct: 313 EITLAFRTLQRNGLMLHTGKSADYVNLSLKSGAVWLVINLGSGAFEALVEPVNGKFNDNA 372

Query: 65  ---IPYTTVLTVSEG-----------WPTLSVNGFLNASSVVLGAPLEVPYGLFVGNTGS 110
              +  T  L    G             T+SV+G L  +         +    F    GS
Sbjct: 373 WHDVRVTRNLRQHAGIGHAMVNKLHYLVTISVDGILTTTGYTQEDYTMLGSDDFFYIGGS 432

Query: 111 LGLPYLRGT--SHPLRGCLHAATLNGHSLLRPLTPDMHEGCAE-------EFSTSDDVAL 161
                L G+  S+   GCL       +     L+    EG  +        F   D  AL
Sbjct: 433 PNTADLPGSPVSNNFMGCLKDVVYKNNDFKLELSRLAKEGDPKMKLQGDLSFRCEDVAAL 492

Query: 162 G---FSGPHSLAAFPAWGTQNKGTLELALTTQIWQAPLTFQ-------AAGWHG-----D 206
               F  P +  A P W  +  G++ L   T      L F         AG H      D
Sbjct: 493 DPVTFESPEAFVALPRWSAKRTGSISLDFRTTEPNGLLLFSQGRRAGGGAGSHSSAQRAD 552

Query: 207 FIHVDIFEGHLWFMVEKGQGTV-LLLNSVLVADVQTLKVSIHINTHQLEISMDQYPTRTL 265
           +  +++ +GHL+ +++ G G + L  +S  V D +   V    +  +  IS++   T  L
Sbjct: 553 YFAMELLDGHLYLLLDMGSGGIKLRASSRKVNDGEWCHVDFQRDGRKGSISVNSRSTPFL 612

Query: 266 NRGVLSCLEPCDSLLLGEL 284
             G    L+    L LG L
Sbjct: 613 ATGDSEILDLESELYLGGL 631



 Score = 34.3 bits (77), Expect = 0.13
 Identities = 32/138 (23%), Positives = 61/138 (44%), Gaps = 5/138 (3%)

Query: 2    ALTDIDLQLQFSTSQPEALLLLAAGPA-DHLLLQLYSGHLQVRVVLGQEELRLQIPAEML 60
            A   + L  QF T+ P+ LLL  +G   D ++++L  G++     LG     ++  ++  
Sbjct: 936  AYASMHLFFQFKTTAPDGLLLFNSGNGNDFIVIELVKGYIHYVFDLGNGPSLMKGNSDKP 995

Query: 61   LSDSIPYTTVLTVSEG-WPTLSVNGFLNASSVVLGAPLEVPYGLFVGNTGS---LGLPYL 116
            ++D+  +  V++   G   TL ++             L++   L++G         LP L
Sbjct: 996  VNDNQWHNVVVSRDPGNVHTLKIDSRTVTQHSNGARNLDLKGELYIGGLSKNMFSNLPKL 1055

Query: 117  RGTSHPLRGCLHAATLNG 134
              +    +GCL +  LNG
Sbjct: 1056 VASRDGFQGCLASVDLNG 1073


>gi|14149613 neurexin 1 isoform alpha1 precursor [Homo sapiens]
          Length = 1477

 Score = 43.9 bits (102), Expect = 2e-04
 Identities = 66/318 (20%), Positives = 114/318 (35%), Gaps = 46/318 (14%)

Query: 7   DLQLQFSTSQPEALLLLAAGPADHLLLQLYSGHLQVRVVLGQEELRLQI-PAEMLLSDSI 65
           ++ L F T Q   L+L     AD++ L L +G + + + LG       + P     +D+ 
Sbjct: 307 EITLSFKTLQRNGLMLHTGKSADYVNLALKNGAVSLVINLGSGAFEALVEPVNGKFNDNA 366

Query: 66  PYTTVLT--------VSEGWPTLSVNGFLNASSVVLGAPLEVPYGLFVGNTGSLGLPYLR 117
            +   +T        +     T+SV+G L  +         +    F    GS     L 
Sbjct: 367 WHDVKVTRNLRQHSGIGHAMVTISVDGILTTTGYTQEDYTMLGSDDFFYVGGSPSTADLP 426

Query: 118 GT--SHPLRGCLHAATLNGHSLLRPLTPDMHEGC------------AEEFSTSDDVALGF 163
           G+  S+   GCL       + +   L+    +G              E  +T D +   F
Sbjct: 427 GSPVSNNFMGCLKEVVYKNNDVRLELSRLAKQGDPKMKIHGVVAFKCENVATLDPIT--F 484

Query: 164 SGPHSLAAFPAWGTQNKGTLELALTTQIWQAPLTFQAAGWHG----------------DF 207
             P S  + P W  +  G++     T      + F     HG                DF
Sbjct: 485 ETPESFISLPKWNAKKTGSISFDFRTTEPNGLILFS----HGKPRHQKDAKHPQMIKVDF 540

Query: 208 IHVDIFEGHLWFMVEKGQGTVLLLNSV-LVADVQTLKVSIHINTHQLEISMDQYPTRTLN 266
             +++ +GHL+ +++ G GT+ +   +  V D +   V    +     IS++   T    
Sbjct: 541 FAIEMLDGHLYLLLDMGSGTIKIKALLKKVNDGEWYHVDFQRDGRSGTISVNTLRTPYTA 600

Query: 267 RGVLSCLEPCDSLLLGEL 284
            G    L+  D L LG L
Sbjct: 601 PGESEILDLDDELYLGGL 618


>gi|208609951 neurexin 1 isoform alpha2 precursor [Homo sapiens]
          Length = 1547

 Score = 38.1 bits (87), Expect = 0.009
 Identities = 68/325 (20%), Positives = 114/325 (35%), Gaps = 53/325 (16%)

Query: 7   DLQLQFSTSQPEALLLLAAGPADHLLLQLYSGHLQVRVVLGQEELRLQI-PAEMLLSDS- 64
           ++ L F T Q   L+L     AD++ L L +G + + + LG       + P     +D+ 
Sbjct: 340 EITLSFKTLQRNGLMLHTGKSADYVNLALKNGAVSLVINLGSGAFEALVEPVNGKFNDNA 399

Query: 65  ---IPYTTVLTVSEGWP-----------TLSVNGFLNASSVVLGAPLEVPYGLFVGNTGS 110
              +  T  L    G             T+SV+G L  +         +    F    GS
Sbjct: 400 WHDVKVTRNLRQHSGIGHAMVNKLHCSVTISVDGILTTTGYTQEDYTMLGSDDFFYVGGS 459

Query: 111 LGLPYLRGT--SHPLRGCLHAATLNGHSLLRPLTPDMHEGC------------AEEFSTS 156
                L G+  S+   GCL       + +   L+    +G              E  +T 
Sbjct: 460 PSTADLPGSPVSNNFMGCLKEVVYKNNDVRLELSRLAKQGDPKMKIHGVVAFKCENVATL 519

Query: 157 DDVALGFSGPHSLAAFPAWGTQNKGTLELALTTQIWQAPLTFQAAGWHG----------- 205
           D +   F  P S  + P W  +  G++     T      + F     HG           
Sbjct: 520 DPIT--FETPESFISLPKWNAKKTGSISFDFRTTEPNGLILFS----HGKPRHQKDAKHP 573

Query: 206 -----DFIHVDIFEGHLWFMVEKGQGTVLLLNSV-LVADVQTLKVSIHINTHQLEISMDQ 259
                DF  +++ +GHL+ +++ G GT+ +   +  V D +   V    +     IS++ 
Sbjct: 574 QMIKVDFFAIEMLDGHLYLLLDMGSGTIKIKALLKKVNDGEWYHVDFQRDGRSGTISVNT 633

Query: 260 YPTRTLNRGVLSCLEPCDSLLLGEL 284
             T     G    L+  D L LG L
Sbjct: 634 LRTPYTAPGESEILDLDDELYLGGL 658


>gi|119466532 laminin alpha 2 subunit isoform b precursor [Homo
            sapiens]
          Length = 3118

 Score = 37.0 bits (84), Expect = 0.021
 Identities = 72/343 (20%), Positives = 117/343 (34%), Gaps = 66/343 (19%)

Query: 7    DLQLQFSTSQPEALLLLAAG--PAD-----------HLLLQLYSGHLQVRVVLGQEELRL 53
            ++ L FST     ++LL +G  PA            + ++ L  G L+V +  G   +R 
Sbjct: 2545 EINLSFSTKNESGIILLGSGGTPAPPRRKRRQTGQAYYVILLNRGRLEVHLSTGARTMRK 2604

Query: 54   QI--PAEMLLSDSIPYTTVLTVSEGWPTLSVNGFLN-ASSVVLGAPLEVPYGLFVGNTGS 110
             +  P   L  D   ++  +  + G  T+ V+       ++ +  P+EV   LFVG    
Sbjct: 2605 IVIRPEPNLFHDGREHSVHVERTRGIFTVQVDENRRYMQNLTVEQPIEVKK-LFVGGAPP 2663

Query: 111  LGLPYLRGTSHPLRGCLHAATLNG--------------------HSLLR----------- 139
               P       P  GC+    +N                     H  LR           
Sbjct: 2664 EFQPSPLRNIPPFEGCIWNLVINSVPMDFARPVSFKNADIGRCAHQKLREDEDGAAPAEI 2723

Query: 140  --------------PLTPDMHEGCAEEFSTS---DDVALGFS-GPHSLAAFPAWGTQNKG 181
                          P     H  CA E   +        G S   H   AF     +N+ 
Sbjct: 2724 VIQPEPVPTPAFPTPTPVLTHGPCAAESEPALLIGSKQFGLSRNSHIAIAFDDTKVKNRL 2783

Query: 182  TLELALTTQIWQAPLTFQAAGWHGDFIHVDIFEGHLWFMVEKGQGTVLLLNSVLVADVQT 241
            T+EL + T+     L + A   H DF  V +  G  +F  + G G    +    + D Q 
Sbjct: 2784 TIELEVRTEAESGLLFYMARINHADFATVQLRNGLPYFSYDLGSGDTHTMIPTKINDGQW 2843

Query: 242  LKVSIHINTHQLEISMDQYPTRTLNRGVLSCLEPCDSLLLGEL 284
             K+ I  +  +  + +D    RT++      L+    L +G L
Sbjct: 2844 HKIKIMRSKQEGILYVDGASNRTISPKKADILDVVGMLYVGGL 2886


>gi|28559088 laminin alpha 2 subunit isoform a precursor [Homo
            sapiens]
          Length = 3122

 Score = 37.0 bits (84), Expect = 0.021
 Identities = 72/343 (20%), Positives = 117/343 (34%), Gaps = 66/343 (19%)

Query: 7    DLQLQFSTSQPEALLLLAAG--PAD-----------HLLLQLYSGHLQVRVVLGQEELRL 53
            ++ L FST     ++LL +G  PA            + ++ L  G L+V +  G   +R 
Sbjct: 2549 EINLSFSTKNESGIILLGSGGTPAPPRRKRRQTGQAYYVILLNRGRLEVHLSTGARTMRK 2608

Query: 54   QI--PAEMLLSDSIPYTTVLTVSEGWPTLSVNGFLN-ASSVVLGAPLEVPYGLFVGNTGS 110
             +  P   L  D   ++  +  + G  T+ V+       ++ +  P+EV   LFVG    
Sbjct: 2609 IVIRPEPNLFHDGREHSVHVERTRGIFTVQVDENRRYMQNLTVEQPIEVKK-LFVGGAPP 2667

Query: 111  LGLPYLRGTSHPLRGCLHAATLNG--------------------HSLLR----------- 139
               P       P  GC+    +N                     H  LR           
Sbjct: 2668 EFQPSPLRNIPPFEGCIWNLVINSVPMDFARPVSFKNADIGRCAHQKLREDEDGAAPAEI 2727

Query: 140  --------------PLTPDMHEGCAEEFSTS---DDVALGFS-GPHSLAAFPAWGTQNKG 181
                          P     H  CA E   +        G S   H   AF     +N+ 
Sbjct: 2728 VIQPEPVPTPAFPTPTPVLTHGPCAAESEPALLIGSKQFGLSRNSHIAIAFDDTKVKNRL 2787

Query: 182  TLELALTTQIWQAPLTFQAAGWHGDFIHVDIFEGHLWFMVEKGQGTVLLLNSVLVADVQT 241
            T+EL + T+     L + A   H DF  V +  G  +F  + G G    +    + D Q 
Sbjct: 2788 TIELEVRTEAESGLLFYMARINHADFATVQLRNGLPYFSYDLGSGDTHTMIPTKINDGQW 2847

Query: 242  LKVSIHINTHQLEISMDQYPTRTLNRGVLSCLEPCDSLLLGEL 284
             K+ I  +  +  + +D    RT++      L+    L +G L
Sbjct: 2848 HKIKIMRSKQEGILYVDGASNRTISPKKADILDVVGMLYVGGL 2890


>gi|21362098 required for meiotic nuclear division 5 homolog B [Homo
           sapiens]
          Length = 393

 Score = 34.3 bits (77), Expect = 0.13
 Identities = 31/117 (26%), Positives = 53/117 (45%), Gaps = 6/117 (5%)

Query: 3   LTDIDLQLQFSTSQPEALLLLAAGPADHLLLQLYSGHLQVRVVLGQEELRLQIPAEMLLS 62
           L +++  L+F   +   + LLA GPA  L    Y+ H Q    L Q E+++ + + + L 
Sbjct: 185 LLELNSSLEFKLHRLHFIRLLAGGPAKQLEALSYARHFQPFARLHQREIQVMMGSLVYLR 244

Query: 63  ---DSIPYTTVLTVSEGWPTLSVNGFLNASSVVLGAPLEVPYGLFVGNTGSLGLPYL 116
              +  PY  +L  S  W  +    F   +  +LG  +E P  +    +G + LP L
Sbjct: 245 LGLEKSPYCHLLD-SSHWAEI-CETFTRDACSLLGLSVESPLSVSFA-SGCVALPVL 298


>gi|188528675 slit homolog 1 [Homo sapiens]
          Length = 1534

 Score = 33.1 bits (74), Expect = 0.30
 Identities = 23/78 (29%), Positives = 39/78 (50%), Gaps = 2/78 (2%)

Query: 7    DLQLQFSTSQPEALLLLAAGPADHLLLQLYSGHLQVRVVLGQEELRLQIPAEMLLSDSIP 66
            ++ LQ ST++   +LL   G  DH+ ++LY GH++V    G         AE  ++D   
Sbjct: 1189 NITLQVSTAEDNGILLYN-GDNDHIAVELYQGHVRVSYDPGSYPSSAIYSAE-TINDGQF 1246

Query: 67   YTTVLTVSEGWPTLSVNG 84
            +T  L   +    LS++G
Sbjct: 1247 HTVELVAFDQMVNLSIDG 1264


>gi|21070969 neurexin 3 isoform 1 precursor [Homo sapiens]
          Length = 1061

 Score = 33.1 bits (74), Expect = 0.30
 Identities = 34/139 (24%), Positives = 65/139 (46%), Gaps = 7/139 (5%)

Query: 2   ALTDIDLQLQFSTSQPEALLLLAAGPA-DHLLLQLYSGHLQVRVVLGQEELRLQIPAEML 60
           A T + L  QF T+ P+  +L  +G   D + ++L  G++     LG     ++  ++  
Sbjct: 516 AYTSMHLFFQFKTTSPDGFILFNSGDGNDFIAVELVKGYIHYVFDLGNGPNVIKGNSDRP 575

Query: 61  LSDSIPYTTVLTV-SEGWPTLSVNGFLNASSVVLGAP-LEVPYGLFVGNTGS---LGLPY 115
           L+D+  +  V+T  +    +L V+  +  + V+ GA  L++   L++          LP 
Sbjct: 576 LNDNQWHNVVITRDNSNTHSLKVDTKV-VTQVINGAKNLDLKGDLYMAGLAQGMYSNLPK 634

Query: 116 LRGTSHPLRGCLHAATLNG 134
           L  +    +GCL +  LNG
Sbjct: 635 LVASRDGFQGCLASVDLNG 653



 Score = 32.0 bits (71), Expect = 0.67
 Identities = 21/94 (22%), Positives = 38/94 (40%), Gaps = 22/94 (23%)

Query: 151 EEFSTSDDVALGFSGPHSLAAFPAWGTQNKGTLELALTTQIWQAPLTFQAAGWHG----- 205
           E  +T D +   F  P +  + P W T+  G++     T      + F     HG     
Sbjct: 68  ENVATLDPI--NFETPEAYISLPKWNTKRMGSISFDFRTTEPNGLILFT----HGKPQER 121

Query: 206 -----------DFIHVDIFEGHLWFMVEKGQGTV 228
                      DF  V++ +G+L+ +++ G GT+
Sbjct: 122 KDARSQKNTKVDFFAVELLDGNLYLLLDMGSGTI 155


>gi|11321571 slit homolog 3 [Homo sapiens]
          Length = 1523

 Score = 32.7 bits (73), Expect = 0.39
 Identities = 47/165 (28%), Positives = 67/165 (40%), Gaps = 35/165 (21%)

Query: 7    DLQLQFSTSQPEALLLLAAGPADHLLLQLYSGHLQVRVVLGQEELRLQIPAEMLLS---- 62
            ++ LQ +T +   +LL   G  D L L+LY GH  VR+V       L  P   + S    
Sbjct: 1181 NISLQVATDKDNGILLYK-GDNDPLALELYQGH--VRLVYDS----LSSPPTTVYSVETV 1233

Query: 63   -----DSIPYTTV-----LTVSEGWPTLSVNGFLNASSVVLGAPLEVPYGLFVGNTGSLG 112
                  S+   T+     L V +G P  S+       +V + +PL +      G   S G
Sbjct: 1234 NDGQFHSVELVTLNQTLNLVVDKGTPK-SLGKLQKQPAVGINSPLYLG-----GIPTSTG 1287

Query: 113  LPYLR-GTSHPL---RGCLHAATLNGH----SLLRPLTPDMHEGC 149
            L  LR GT  PL    GC+H   +N        L P +  +  GC
Sbjct: 1288 LSALRQGTDRPLGGFHGCIHEVRINNELQDFKALPPQSLGVSPGC 1332


>gi|38788416 laminin, alpha 1 precursor [Homo sapiens]
          Length = 3075

 Score = 31.2 bits (69), Expect = 1.1
 Identities = 64/275 (23%), Positives = 113/275 (41%), Gaps = 27/275 (9%)

Query: 8    LQLQFSTSQPEALL--LLAAGPADHLLLQLYSGHLQVRVVLGQEELRLQIPAEMLLSDSI 65
            L L   T +P+ LL  L ++  +D L +++  G +     LG    RL+ P +  + D+ 
Sbjct: 2142 LTLNVKTQEPDNLLFYLGSSTASDFLAVEMRRGRVAFLWDLGSGSTRLEFP-DFPIDDNR 2200

Query: 66   PYTTVLTVSEGWPTLSVNGFLN--------ASSVVLGAPLEVPYG--LFVGNTGSL--GL 113
             ++  +       +LSV    +        + S      L+V     +FVG  G      
Sbjct: 2201 WHSIHVARFGNIGSLSVKEMSSNQKSPTKTSKSPGTANVLDVNNSTLMFVGGLGGQIKKS 2260

Query: 114  PYLRGTSHPLRGCLHAATLNGHSLLRPLTPDMHEGCAEEFSTS--DDVALGFSGP-HSLA 170
            P ++ T    +GCL  A LNG S+      +    C   F +S  +D +  F G  +S+ 
Sbjct: 2261 PAVKVTH--FKGCLGEAFLNGKSIGLWNYIEREGKCRGCFGSSQNEDPSFHFDGSGYSVV 2318

Query: 171  --AFPAWGTQNKGTLELALTTQIWQAPLTFQAAGWHGDFIHVDIFEGHLWFMVEKGQGTV 228
              + PA  TQ    + +   T      L +  +    DF+ +++F G +  M + G G +
Sbjct: 2319 EKSLPATVTQ----IIMLFNTFSPNGLLLYLGSYGTKDFLSIELFRGRVKVMTDLGSGPI 2374

Query: 229  LLLNSVLVADVQTLKVSIHINTHQLEIS-MDQYPT 262
             LL      +    K++   N  Q  ++ +D Y T
Sbjct: 2375 TLLTDRRYNNGTWYKIAFQRNRKQGVLAVIDAYNT 2409



 Score = 30.4 bits (67), Expect = 1.9
 Identities = 37/140 (26%), Positives = 60/140 (42%), Gaps = 13/140 (9%)

Query: 6    IDLQLQFSTSQPEALLLLAA--GPADHLLLQLYSGHLQVRVVLGQEELRLQIPAEMLLSD 63
            + ++L   T     L+   A    AD+ +LQL+ G L     LG+   ++  PA  LLSD
Sbjct: 2737 LSVELSIRTFASSGLIYYMAHQNQADYAVLQLHGGRLHFMFDLGKGRTKVSHPA--LLSD 2794

Query: 64   SIPYTTVLTVSEGWPTLSVNGFLNASSVVL--GAPLEVPYGLFVGNTGSLGLPY----LR 117
               +T      +    ++V+G  +    V+  G  L+V  GLF    G L   Y    + 
Sbjct: 2795 GKWHTVKTDYVKRKGFITVDGRESPMVTVVGDGTMLDVE-GLFY--LGGLPSQYQARKIG 2851

Query: 118  GTSHPLRGCLHAATLNGHSL 137
              +H +  C+   T+N   L
Sbjct: 2852 NITHSIPACIGDVTVNSKQL 2871


>gi|4505463 contactin associated protein 1 precursor [Homo sapiens]
          Length = 1384

 Score = 30.8 bits (68), Expect = 1.5
 Identities = 52/225 (23%), Positives = 85/225 (37%), Gaps = 27/225 (12%)

Query: 12  FSTSQPEALLLLAAGP-ADHLLLQLYSGHLQVRVVLGQEELRLQ-----IPAEMLLSDSI 65
           F T + + LLL A G   D++ L+L   HL + + LG   ++ +     + A  +L+D  
Sbjct: 203 FKTEEKDGLLLHAEGAQGDYVTLELEGAHLLLHMSLGSSPIQPRPGHTTVSAGGVLNDQH 262

Query: 66  PYTTVLTVSEGWPTLSVNGF-----LNASSVVLGAPLEVPYGLFVGNTGSLGLPYLRGTS 120
            +   +         +++G+     LN     L    E+  G  VG      L Y     
Sbjct: 263 WHYVRVDRFGRDVNFTLDGYVQRFILNGDFERLNLDTEMFIGGLVG-AARKNLAY----R 317

Query: 121 HPLRGCLHAATLNGHSLLRPLTPDMHEGCAEE----FSTSDDVA--LGFSGPHSLAAFPA 174
           H  RGC+     N  ++   L    H     E    F   D V   + F GPH+    P 
Sbjct: 318 HNFRGCIENVIFNRVNIA-DLAVRRHSRITFEGKVAFRCLDPVPHPINFGGPHNFVQVP- 375

Query: 175 WGTQNKGTLELALTTQIWQAP--LTFQAAGWHGDFIHVDIFEGHL 217
            G   +G L ++   + W     L F   G     + + + EG +
Sbjct: 376 -GFPRRGRLAVSFRFRTWDLTGLLLFSRLGDGLGHVELTLSEGQV 419


>gi|188536110 leucine rich repeat neuronal 4 [Homo sapiens]
          Length = 740

 Score = 30.4 bits (67), Expect = 1.9
 Identities = 39/137 (28%), Positives = 55/137 (40%), Gaps = 14/137 (10%)

Query: 39  HLQVRVVLGQEELRLQIPAEMLLSDSIPYTTVLT-VSEGWPTLSVNGFLNASSVVLGAPL 97
           HLQ      Q   R + P  +   D+IP    L  V+E   T ++  +   +SVV G  +
Sbjct: 554 HLQTPCAELQRRWRCRCPG-LSGEDTIPDPPRLQGVTETTDTSALVHWCAPNSVVHGYQI 612

Query: 98  EVPYGLFVGNTGSLGLPYLRGTSHPLRG---------CLHAATLNGHSLLRPLTPDMHEG 148
                 + GN   +G+ Y     HPL G         C+ AA  N   L +P +      
Sbjct: 613 RYSAEGWAGNQSVVGVIYATARQHPLYGLSPGTTYRVCVLAA--NRAGLSQPRSSGWRSP 670

Query: 149 CAEEFSTSDDVALGFSG 165
           CA  F+T    AL  SG
Sbjct: 671 CA-AFTTKPSFALLLSG 686


>gi|54873613 agrin [Homo sapiens]
          Length = 2045

 Score = 30.0 bits (66), Expect = 2.5
 Identities = 40/152 (26%), Positives = 60/152 (39%), Gaps = 16/152 (10%)

Query: 108  TGSLGLPYLRGTSHPLRGCLHAATL----NGHSLLRP---LTPDMHEGCAEEFSTSDDVA 160
            T   G P  R + HP   CL+ A+       +  L P     P   +G  E+ S  D   
Sbjct: 1811 TSFAGHPCTRASGHP---CLNGASCVPREAAYVCLCPGGFSGPHCEKGLVEK-SAGDVDT 1866

Query: 161  LGFSGPHSLAAFPAWGTQNKGT----LELALTTQIWQAPLTFQA-AGWHGDFIHVDIFEG 215
            L F G   +    A     K       EL+L T+  Q  + +   A    D++ + I +G
Sbjct: 1867 LAFDGRTFVEYLNAVTESEKALQSNHFELSLRTEATQGLVLWSGKATERADYVALAIVDG 1926

Query: 216  HLWFMVEKGQGTVLLLNSVLVADVQTLKVSIH 247
            HL      G   V+L ++V V   + L+V  H
Sbjct: 1927 HLQLSYNLGSQPVVLRSTVPVNTNRWLRVVAH 1958



 Score = 28.9 bits (63), Expect = 5.7
 Identities = 34/143 (23%), Positives = 54/143 (37%), Gaps = 9/143 (6%)

Query: 2    ALTDIDLQLQFSTSQPEALLLL---AAGPADHLLLQLYSGHLQVRVVLGQEELRLQIPAE 58
            AL     +L   T   + L+L    A   AD++ L +  GHLQ+   LG + + L+    
Sbjct: 1887 ALQSNHFELSLRTEATQGLVLWSGKATERADYVALAIVDGHLQLSYNLGSQPVVLRSTVP 1946

Query: 59   MLLSDSIPYTTVLTVSEGWPTLSVNGFLNASSVVLGAPLEVPYGLFVGNTGSL----GLP 114
            +  +  +         EG   +     +  SS +    L+    L++G    L     LP
Sbjct: 1947 VNTNRWLRVVAHREQREGSLQVGNEAPVTGSSPLGATQLDTDGALWLGGLPELPVGPALP 2006

Query: 115  YLRGTSHPLRGCLHAATLNGHSL 137
               GT     GCL    +  H L
Sbjct: 2007 KAYGTG--FVGCLRDVVVGRHPL 2027


>gi|116284404 cell recognition protein CASPR4 isoform 1 [Homo
           sapiens]
          Length = 1308

 Score = 30.0 bits (66), Expect = 2.5
 Identities = 45/212 (21%), Positives = 79/212 (37%), Gaps = 32/212 (15%)

Query: 8   LQLQFSTSQPEALLLLAAGP-ADHLLLQLYSGHLQVRVVLGQEEL-----RLQIPAEMLL 61
           + L+F T Q + +LL   GP  DH+ LQL    L + +  G+ +L      + +    LL
Sbjct: 208 ISLKFKTMQSDGILLHREGPNGDHITLQLRRARLFLLINSGEAKLPSTSTLVNLTLGSLL 267

Query: 62  SDSIPYTTVL---------TVSEGWPTLSVNGFLNASSVVLGAPLEVPYGLFVGNTGSLG 112
            D   ++ ++         TV E        G  N    ++    E+ +G       S+ 
Sbjct: 268 DDQHWHSVLIQRLGKQVNFTVDEHRHHFHARGEFN----LMNLDYEISFGGIPAPGKSVS 323

Query: 113 LPYLRGTSHPLRGCLHAATLNGHSLLRPLTPDMHEGCAEEFSTSDDVALGFSGPHSLAAF 172
            P+         GCL     NG  ++     D+ +    +     +V+   S P S+   
Sbjct: 324 FPH-----RNFHGCLENLYYNGVDII-----DLAKQQKPQIIAMGNVSFSCSQPQSM--- 370

Query: 173 PAWGTQNKGTLELALTTQIWQAPLTFQAAGWH 204
           P     ++  L L   +   +   TFQ   W+
Sbjct: 371 PVTFLSSRSYLALPDFSGEEEVSATFQFRTWN 402


>gi|167900484 pentraxin 3 [Homo sapiens]
          Length = 381

 Score = 29.3 bits (64), Expect = 4.3
 Identities = 22/70 (31%), Positives = 32/70 (45%)

Query: 33  LQLYSGHLQVRVVLGQEELRLQIPAEMLLSDSIPYTTVLTVSEGWPTLSVNGFLNASSVV 92
           +QLY  +  +  V+G EE +L   A + L             EG  +L VNG L A++V 
Sbjct: 236 IQLYLSYQSIVFVVGGEENKLVAEAMVSLGRWTHLCGTWNSEEGLTSLWVNGELAATTVE 295

Query: 93  LGAPLEVPYG 102
           +     VP G
Sbjct: 296 MATGHIVPEG 305


>gi|148664242 cell recognition protein CASPR4 isoform 2 [Homo
           sapiens]
          Length = 1235

 Score = 29.3 bits (64), Expect = 4.3
 Identities = 16/45 (35%), Positives = 25/45 (55%), Gaps = 1/45 (2%)

Query: 8   LQLQFSTSQPEALLLLAAGP-ADHLLLQLYSGHLQVRVVLGQEEL 51
           + L+F T Q + +LL   GP  DH+ LQL    L + +  G+ +L
Sbjct: 183 ISLKFKTMQSDGILLHREGPNGDHITLQLRRARLFLLINSGEAKL 227


>gi|221219020 NYD-SP11 protein [Homo sapiens]
          Length = 2873

 Score = 28.9 bits (63), Expect = 5.7
 Identities = 21/42 (50%), Positives = 27/42 (64%), Gaps = 3/42 (7%)

Query: 15  SQPEALLLLAAGPADHLLLQ--LYSGHLQVRVVLGQEELRLQ 54
           S+PEA  LL AG +D L+ +  L SG L  R+ LG+E  RLQ
Sbjct: 252 SRPEAHTLLTAG-SDSLIKEWNLTSGSLLRRLELGEELYRLQ 292


>gi|126012571 heparan sulfate proteoglycan 2 [Homo sapiens]
          Length = 4391

 Score = 28.9 bits (63), Expect = 5.7
 Identities = 26/94 (27%), Positives = 41/94 (43%), Gaps = 9/94 (9%)

Query: 157  DDVALGFSGPHSLAAFPAWGTQNKGTLELALTTQIWQAPLTFQA-----AGWHGDFIHVD 211
            DD  L F G     + P    +   T+EL + T      L +Q      AG   DFI + 
Sbjct: 4208 DDGFLAFPGHVFSRSLP----EVPETIELEVRTSTASGLLLWQGVEVGEAGQGKDFISLG 4263

Query: 212  IFEGHLWFMVEKGQGTVLLLNSVLVADVQTLKVS 245
            + +GHL F  + G G   L++   + D +  +V+
Sbjct: 4264 LQDGHLVFRYQLGSGEARLVSEDPINDGEWHRVT 4297


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.320    0.136    0.415 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,166,719
Number of Sequences: 37866
Number of extensions: 477143
Number of successful extensions: 1044
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 1004
Number of HSP's gapped (non-prelim): 48
length of query: 296
length of database: 18,247,518
effective HSP length: 102
effective length of query: 194
effective length of database: 14,385,186
effective search space: 2790726084
effective search space used: 2790726084
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 61 (28.1 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.