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Search of human proteins with 116812610
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|116812610 apolipoprotein O-like [Homo sapiens]
(268 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|116812610 apolipoprotein O-like [Homo sapiens] 534 e-152
gi|13129148 apolipoprotein O [Homo sapiens] 122 3e-28
gi|148368962 NKF3 kinase family member [Homo sapiens] 35 0.090
gi|191251777 breast carcinoma amplified sequence 1 [Homo sapiens] 33 0.34
gi|157427193 hypothetical protein LOC340286 [Homo sapiens] 31 1.3
gi|22779877 connexin 46 [Homo sapiens] 31 1.3
gi|150170732 hypothetical protein LOC374470 [Homo sapiens] 31 1.3
gi|150170675 hypothetical protein LOC374470 [Homo sapiens] 31 1.3
gi|239757861 PREDICTED: similar to armadillo repeat containing, ... 30 2.9
gi|71274152 hypothetical protein LOC388939 [Homo sapiens] 30 2.9
gi|20127446 integrin, beta 5 [Homo sapiens] 29 3.8
gi|134948605 ankyrin repeat domain 12 isoform 2 [Homo sapiens] 29 3.8
gi|134948558 ankyrin repeat domain 12 isoform 1 [Homo sapiens] 29 3.8
gi|32483416 neurofilament, heavy polypeptide 200kDa [Homo sapiens] 29 4.9
gi|58761535 zinc finger protein 518B [Homo sapiens] 29 4.9
gi|221307568 DENN/MADD domain containing 4A isoform 1 [Homo sapi... 28 6.4
gi|221307566 DENN/MADD domain containing 4A isoform 2 [Homo sapi... 28 6.4
gi|31581524 cordon-bleu homolog [Homo sapiens] 28 6.4
gi|126723060 zinc finger CCCH-type containing 4 [Homo sapiens] 28 6.4
gi|67551265 transcription factor ELYS [Homo sapiens] 28 6.4
gi|160707950 methyl CpG binding protein 2 isoform 2 [Homo sapiens] 28 8.4
gi|4826830 methyl CpG binding protein 2 isoform 1 [Homo sapiens] 28 8.4
gi|95147555 microtubule-associated protein 1A [Homo sapiens] 28 8.4
gi|13027378 glucosamine-6-phosphate deaminase 1 [Homo sapiens] 28 8.4
>gi|116812610 apolipoprotein O-like [Homo sapiens]
Length = 268
Score = 534 bits (1376), Expect = e-152
Identities = 268/268 (100%), Positives = 268/268 (100%)
Query: 1 MAAIRMGKLTTMPAGLIYASVSVHAAKQEESKKQLVKPEQLPIYTAPPLQSKYVEEQPGH 60
MAAIRMGKLTTMPAGLIYASVSVHAAKQEESKKQLVKPEQLPIYTAPPLQSKYVEEQPGH
Sbjct: 1 MAAIRMGKLTTMPAGLIYASVSVHAAKQEESKKQLVKPEQLPIYTAPPLQSKYVEEQPGH 60
Query: 61 LQMGFASIRTATGCYIGWCKGVYVFVKNGIMDTVQFGKDAYVYLKNPPRDFLPKMGVITV 120
LQMGFASIRTATGCYIGWCKGVYVFVKNGIMDTVQFGKDAYVYLKNPPRDFLPKMGVITV
Sbjct: 61 LQMGFASIRTATGCYIGWCKGVYVFVKNGIMDTVQFGKDAYVYLKNPPRDFLPKMGVITV 120
Query: 121 SGLAGLVSARKGSKFKKITYPLGLATLGATVCYPVQSVIIAKVTAKKVYATSQQIFGAVK 180
SGLAGLVSARKGSKFKKITYPLGLATLGATVCYPVQSVIIAKVTAKKVYATSQQIFGAVK
Sbjct: 121 SGLAGLVSARKGSKFKKITYPLGLATLGATVCYPVQSVIIAKVTAKKVYATSQQIFGAVK 180
Query: 181 SLWTKSSKEESLPKPKEKTKLGSSSEIEVPAKTTHVLKHSVPLPTELSSEAKTKSESTSG 240
SLWTKSSKEESLPKPKEKTKLGSSSEIEVPAKTTHVLKHSVPLPTELSSEAKTKSESTSG
Sbjct: 181 SLWTKSSKEESLPKPKEKTKLGSSSEIEVPAKTTHVLKHSVPLPTELSSEAKTKSESTSG 240
Query: 241 ATQFMPDPKLMDHGQSHPEDIDMYSTRS 268
ATQFMPDPKLMDHGQSHPEDIDMYSTRS
Sbjct: 241 ATQFMPDPKLMDHGQSHPEDIDMYSTRS 268
>gi|13129148 apolipoprotein O [Homo sapiens]
Length = 198
Score = 122 bits (306), Expect = 3e-28
Identities = 68/189 (35%), Positives = 108/189 (57%), Gaps = 2/189 (1%)
Query: 13 PAGLIYASVSVHAAKQEESK-KQLVKPEQLPIYTAPPLQSKYVEEQPGHLQMGFASIRTA 71
PA L + V+AA +++S K VK ++L +Y+ P QSKYVEE L+ + +R
Sbjct: 11 PASLSLLTFKVYAAPKKDSPPKNSVKVDELSLYSVPEGQSKYVEEARSQLEESISQLRHY 70
Query: 72 TGCYIGWCKGVYVFVKNGIMDTVQFGKDAYVYLKNPPRDFLPKMGVITVSGLAGLVSARK 131
Y WC+ Y K + VQ+G D+Y YL+N P F P++GVI +GL GL+ AR
Sbjct: 71 CEPYTTWCQETYSQTKPKMQSLVQWGLDSYDYLQNAPPGFFPRLGVIGFAGLIGLLLAR- 129
Query: 132 GSKFKKITYPLGLATLGATVCYPVQSVIIAKVTAKKVYATSQQIFGAVKSLWTKSSKEES 191
GSK KK+ YP G L A++ YP Q+++ A+V+ +++Y + + ++ LW ++ ++
Sbjct: 130 GSKIKKLVYPPGFMGLAASLYYPQQAIVFAQVSGERLYDWGLRGYIVIEDLWKENFQKPG 189
Query: 192 LPKPKEKTK 200
K TK
Sbjct: 190 NVKNSPGTK 198
>gi|148368962 NKF3 kinase family member [Homo sapiens]
Length = 1746
Score = 34.7 bits (78), Expect = 0.090
Identities = 40/149 (26%), Positives = 63/149 (42%), Gaps = 20/149 (13%)
Query: 108 PRDFLPKMGVITVSGLAGLVSARKGSKFKKITYPLGLATLGATVCYPVQSVIIAKVTAKK 167
PR +PK+ +IT SG V RK T P T+ PV+S ++++
Sbjct: 541 PRQKIPKVELIT-SGTGPNVPPRKNCHKSAPTSPTATNISSKTI--PVKSPNLSEIKFNS 597
Query: 168 VYATSQQIFGAV---KSLWTKSSKEE-SLP---KPKE-------KTKLGSSSEIEVPAKT 213
F + + + +SSK +P P K+ LG+S E+ V KT
Sbjct: 598 YNNAGMPPFPIIIHDEPTYARSSKNAIKVPIVINPNAYDNLAIYKSFLGTSGELSVKEKT 657
Query: 214 THVLKHSVPLPTELSSEAKTKSESTSGAT 242
T V+ H+ E+ +E+K +TS T
Sbjct: 658 TSVISHTY---EEIETESKVPDNTTSKTT 683
>gi|191251777 breast carcinoma amplified sequence 1 [Homo sapiens]
Length = 584
Score = 32.7 bits (73), Expect = 0.34
Identities = 29/95 (30%), Positives = 44/95 (46%), Gaps = 16/95 (16%)
Query: 180 KSLWTKSSKEESLPKPKEK-------TKLGSSSEIEVPAKTTHVLK-HSVPLPTELSSEA 231
K W KS KE+S+P E+ ++ S E+E +T + + + P PT EA
Sbjct: 375 KLFWKKSVKEDSVPTGAEENVVCESPVEIIKSKEVESALQTVDLNEGDAAPEPT----EA 430
Query: 232 KTKSESTSGATQFMPDPKLM----DHGQSHPEDID 262
K K E + T M + M D G +H E+I+
Sbjct: 431 KLKREESKPRTSLMAFLRQMSVKGDGGITHSEEIN 465
>gi|157427193 hypothetical protein LOC340286 [Homo sapiens]
Length = 135
Score = 30.8 bits (68), Expect = 1.3
Identities = 15/60 (25%), Positives = 32/60 (53%), Gaps = 3/60 (5%)
Query: 211 AKTTHVLKHSVPLPTELSSEAKTKSESTSGATQFMPDPKLMDHGQSH---PEDIDMYSTR 267
A+ +++ H+ PT+ EA+T+++ ++ + DP+ DH +H DI +Y +
Sbjct: 65 ARFLNLIHHAAQGPTKKYPEAQTENQEIGWDSEALVDPERRDHRMNHFRVYSDITLYKAK 124
>gi|22779877 connexin 46 [Homo sapiens]
Length = 435
Score = 30.8 bits (68), Expect = 1.3
Identities = 19/59 (32%), Positives = 28/59 (47%), Gaps = 4/59 (6%)
Query: 16 LIYASVSVHAAKQEESKKQLVKPEQL----PIYTAPPLQSKYVEEQPGHLQMGFASIRT 70
LIY +H + EE KK+ + EQL P PP + + G ++M A +RT
Sbjct: 90 LIYLGHVLHIVRMEEKKKEREEEEQLKRESPSPKEPPQDNPSSRDDRGRVRMAGALLRT 148
>gi|150170732 hypothetical protein LOC374470 [Homo sapiens]
Length = 360
Score = 30.8 bits (68), Expect = 1.3
Identities = 19/72 (26%), Positives = 32/72 (44%), Gaps = 3/72 (4%)
Query: 171 TSQQIFGAVKSLWTKSSKEESLPKPKEKTKLGSSSEIEVPAKTTHVLKHSVPLPTELSSE 230
T ++ GA K W S E+ + KP S + + + A+ H+ +H+ P LSS
Sbjct: 150 TEERARGAPKQAWNSSFLEQLVKKP---NWAHSVNPVHLEAQGIHISRHTRPKGQPLSSP 206
Query: 231 AKTKSESTSGAT 242
K + +T
Sbjct: 207 KKNSGSAARPST 218
>gi|150170675 hypothetical protein LOC374470 [Homo sapiens]
Length = 360
Score = 30.8 bits (68), Expect = 1.3
Identities = 19/72 (26%), Positives = 32/72 (44%), Gaps = 3/72 (4%)
Query: 171 TSQQIFGAVKSLWTKSSKEESLPKPKEKTKLGSSSEIEVPAKTTHVLKHSVPLPTELSSE 230
T ++ GA K W S E+ + KP S + + + A+ H+ +H+ P LSS
Sbjct: 150 TEERARGAPKQAWNSSFLEQLVKKP---NWAHSVNPVHLEAQGIHISRHTRPKGQPLSSP 206
Query: 231 AKTKSESTSGAT 242
K + +T
Sbjct: 207 KKNSGSAARPST 218
>gi|239757861 PREDICTED: similar to armadillo repeat containing,
X-linked 4 [Homo sapiens]
Length = 2382
Score = 29.6 bits (65), Expect = 2.9
Identities = 19/57 (33%), Positives = 34/57 (59%), Gaps = 8/57 (14%)
Query: 187 SKEESLPKPKEKTKLGSSSEIEVPAKT-THVLKHSVPLPTELSSEAKTKSESTSGAT 242
++ E+L P+E K+G++++ + +T T L+ +V S AKT+SE+ GAT
Sbjct: 300 TQSETLAVPREVAKMGATNKTGIVDETKTRALEETV-------SVAKTQSEARPGAT 349
>gi|71274152 hypothetical protein LOC388939 [Homo sapiens]
Length = 1288
Score = 29.6 bits (65), Expect = 2.9
Identities = 22/77 (28%), Positives = 32/77 (41%), Gaps = 14/77 (18%)
Query: 186 SSKEESLPKPKEKTKLGSSSEIEVPAKTTHVLKHSVPLPTELSSEAKTK----------- 234
S E+S P+ +E+ K+ S S KT H S P E +A+T+
Sbjct: 482 SDSEDSSPEEEEEDKMSSMSLCAWQEKTPHSRPQSSPADRESPFQARTRRLRSLQAQEMI 541
Query: 235 ---SESTSGATQFMPDP 248
ES S +F+P P
Sbjct: 542 LKMKESISERIKFVPVP 558
>gi|20127446 integrin, beta 5 [Homo sapiens]
Length = 799
Score = 29.3 bits (64), Expect = 3.8
Identities = 20/60 (33%), Positives = 33/60 (55%), Gaps = 7/60 (11%)
Query: 172 SQQIFGAVKSLWTKSSKEESLPKPKEKTKLGSSSEIEVPAKTTHVLKHSVPLPTELSSEA 231
S++ FG+ +S+ ++ +L K G EIE PA + HVL+ S+PL ++ S A
Sbjct: 50 SKEDFGSPRSITSRCDLRANL------VKNGCGGEIESPASSFHVLR-SLPLSSKGSGSA 102
>gi|134948605 ankyrin repeat domain 12 isoform 2 [Homo sapiens]
Length = 2039
Score = 29.3 bits (64), Expect = 3.8
Identities = 20/80 (25%), Positives = 38/80 (47%), Gaps = 5/80 (6%)
Query: 183 WTKSSKEESLPKPKEKTKLGSSSEIEVPAKTTHVLKHSVPLPTELSSEAKTKSESTSGAT 242
W K KE+ KEK +L + + +E+ K KH+ PTE ++ T+S+S+
Sbjct: 1071 WHKKHKEKIKQ--KEKERLRNRNCLELKIKDKEKTKHT---PTESKNKELTRSKSSEVTD 1125
Query: 243 QFMPDPKLMDHGQSHPEDID 262
+ + + D + + +D
Sbjct: 1126 AYTKEKQPKDAVSNRSQSVD 1145
>gi|134948558 ankyrin repeat domain 12 isoform 1 [Homo sapiens]
Length = 2062
Score = 29.3 bits (64), Expect = 3.8
Identities = 20/80 (25%), Positives = 38/80 (47%), Gaps = 5/80 (6%)
Query: 183 WTKSSKEESLPKPKEKTKLGSSSEIEVPAKTTHVLKHSVPLPTELSSEAKTKSESTSGAT 242
W K KE+ KEK +L + + +E+ K KH+ PTE ++ T+S+S+
Sbjct: 1094 WHKKHKEKIKQ--KEKERLRNRNCLELKIKDKEKTKHT---PTESKNKELTRSKSSEVTD 1148
Query: 243 QFMPDPKLMDHGQSHPEDID 262
+ + + D + + +D
Sbjct: 1149 AYTKEKQPKDAVSNRSQSVD 1168
>gi|32483416 neurofilament, heavy polypeptide 200kDa [Homo sapiens]
Length = 1020
Score = 28.9 bits (63), Expect = 4.9
Identities = 17/58 (29%), Positives = 24/58 (41%)
Query: 184 TKSSKEESLPKPKEKTKLGSSSEIEVPAKTTHVLKHSVPLPTELSSEAKTKSESTSGA 241
TKS E P+++ K E + PA+ K P E+ S K KS + A
Sbjct: 501 TKSPPAEEAASPEKEAKSPVKEEAKSPAEAKSPEKEEAKSPAEVKSPEKAKSPAKEEA 558
Score = 28.1 bits (61), Expect = 8.4
Identities = 18/62 (29%), Positives = 26/62 (41%)
Query: 180 KSLWTKSSKEESLPKPKEKTKLGSSSEIEVPAKTTHVLKHSVPLPTELSSEAKTKSESTS 239
KS + +K + K EK K E + PA+ +K P E+ S K KS +
Sbjct: 585 KSPAKEEAKSPAEAKSPEKAKSPVKEEAKSPAEAKSPVKEEAKSPAEVKSPEKAKSPTKE 644
Query: 240 GA 241
A
Sbjct: 645 EA 646
>gi|58761535 zinc finger protein 518B [Homo sapiens]
Length = 1074
Score = 28.9 bits (63), Expect = 4.9
Identities = 25/112 (22%), Positives = 46/112 (41%), Gaps = 1/112 (0%)
Query: 129 ARKGSKFKKITYPLGLATLGATVC-YPVQSVIIAKVTAKKVYATSQQIFGAVKSLWTKSS 187
A KG + L +LGA +P ++ + + + ++++SQQ+ S T S
Sbjct: 480 ALKGHSLASVFKNSVLRSLGAASNPFPYKAAVCFAESGRNLHSSSQQLLPFAASPATCSF 539
Query: 188 KEESLPKPKEKTKLGSSSEIEVPAKTTHVLKHSVPLPTELSSEAKTKSESTS 239
E P + L S+S++ +P K + TE T + +S
Sbjct: 540 SGEKGLLPVSENDLESTSKVNIPVKVVSSNRKQEDNQTEEHKAVSTVGQISS 591
>gi|221307568 DENN/MADD domain containing 4A isoform 1 [Homo
sapiens]
Length = 1906
Score = 28.5 bits (62), Expect = 6.4
Identities = 28/107 (26%), Positives = 47/107 (43%), Gaps = 7/107 (6%)
Query: 119 TVSGLAGLVSARKGSKFKKITYP----LGLATLGATV-CYPVQSVIIAKVTAKKVY--AT 171
TVS AGL+ ++ + P L +GAT+ C+P S V + V A+
Sbjct: 205 TVSYKAGLICRYPQEDYESFSLPESVPLFCLPMGATIECWPSNSKYPLPVFSTFVLTGAS 264
Query: 172 SQQIFGAVKSLWTKSSKEESLPKPKEKTKLGSSSEIEVPAKTTHVLK 218
+++++GA + S+E K + L S+ +KT H K
Sbjct: 265 AEKVYGAAIQFYEPYSEENLTEKQRLLLGLTSADGKSDSSKTIHTNK 311
>gi|221307566 DENN/MADD domain containing 4A isoform 2 [Homo
sapiens]
Length = 1863
Score = 28.5 bits (62), Expect = 6.4
Identities = 28/107 (26%), Positives = 47/107 (43%), Gaps = 7/107 (6%)
Query: 119 TVSGLAGLVSARKGSKFKKITYP----LGLATLGATV-CYPVQSVIIAKVTAKKVY--AT 171
TVS AGL+ ++ + P L +GAT+ C+P S V + V A+
Sbjct: 205 TVSYKAGLICRYPQEDYESFSLPESVPLFCLPMGATIECWPSNSKYPLPVFSTFVLTGAS 264
Query: 172 SQQIFGAVKSLWTKSSKEESLPKPKEKTKLGSSSEIEVPAKTTHVLK 218
+++++GA + S+E K + L S+ +KT H K
Sbjct: 265 AEKVYGAAIQFYEPYSEENLTEKQRLLLGLTSADGKSDSSKTIHTNK 311
>gi|31581524 cordon-bleu homolog [Homo sapiens]
Length = 1261
Score = 28.5 bits (62), Expect = 6.4
Identities = 31/130 (23%), Positives = 54/130 (41%), Gaps = 3/130 (2%)
Query: 105 KNPPRDFLPKMGVITVSGLAGLVSARKGSKFKKI-TYPLGLATLGATVCYPVQSVIIAKV 163
+NP + + K G+ T + R + + T + + LG V + I +
Sbjct: 693 QNPGKSYRLKHGLTTYKIIPPKSEMRCYDRDVSLSTGAIKIDELGNLVSPHATGIRIISL 752
Query: 164 TAKKVYATSQQIFGAVKSLWTKSSKEESLPKPKEKTKLGSSSEIEVPAKTTHVLKHSVPL 223
++ A SQ I G V+ W +S E+ L +P E + G S VP +T +
Sbjct: 753 SSSVPEAESQPI-GKVREFWRCNSVEKHLGRPSESSARGPPS-TPVPTQTQNPESRLQAD 810
Query: 224 PTELSSEAKT 233
P +S + K+
Sbjct: 811 PKPISPQQKS 820
>gi|126723060 zinc finger CCCH-type containing 4 [Homo sapiens]
Length = 1303
Score = 28.5 bits (62), Expect = 6.4
Identities = 17/60 (28%), Positives = 26/60 (43%), Gaps = 14/60 (23%)
Query: 213 TTHVLKHSVPLPT----------ELSSEAKTKSESTSGATQFMPDPKLMDHGQSHPEDID 262
T H+L H +PLP EL + +++ TSG P+ + G+ H D D
Sbjct: 40 TPHLLHHRLPLPDDREDGELEEGELEDDGAEETQDTSGG----PERSRKEKGEKHHSDSD 95
>gi|67551265 transcription factor ELYS [Homo sapiens]
Length = 2266
Score = 28.5 bits (62), Expect = 6.4
Identities = 27/102 (26%), Positives = 49/102 (48%), Gaps = 17/102 (16%)
Query: 184 TKSSKEESLPKPKEKTKLGSSSEIEVPAKTTHV------LKHSVPLPTE-----LSSE-- 230
+K+ KEE PK KE + S PAK+ +V L S+ +P E +SS+
Sbjct: 1988 SKAVKEERSPKKKEAPSIRRRSTRNTPAKSENVDVGKPALGKSILVPNEELSMVMSSKKK 2047
Query: 231 --AKTKSESTSGATQFMPDPKL--MDHGQSHPEDIDMYSTRS 268
KT+S+S + + + + M H +++ ++ + +T S
Sbjct: 2048 LTKKTESQSQKRSLHSVSEERTDEMTHKETNEQEERLLATAS 2089
>gi|160707950 methyl CpG binding protein 2 isoform 2 [Homo sapiens]
Length = 498
Score = 28.1 bits (61), Expect = 8.4
Identities = 25/84 (29%), Positives = 34/84 (40%), Gaps = 4/84 (4%)
Query: 178 AVKSLWTKSSKEESLPKPKEKTKLGSSSEIEVPAK----TTHVLKHSVPLPTELSSEAKT 233
AVK +S +E LP K KT+ S E++ K +T K L T S K+
Sbjct: 299 AVKESSIRSVQETVLPIKKRKTRETVSIEVKEVVKPLLVSTLGEKSGKGLKTCKSPGRKS 358
Query: 234 KSESTSGATQFMPDPKLMDHGQSH 257
K S G + P +H H
Sbjct: 359 KESSPKGRSSSASSPPKKEHHHHH 382
>gi|4826830 methyl CpG binding protein 2 isoform 1 [Homo sapiens]
Length = 486
Score = 28.1 bits (61), Expect = 8.4
Identities = 25/84 (29%), Positives = 34/84 (40%), Gaps = 4/84 (4%)
Query: 178 AVKSLWTKSSKEESLPKPKEKTKLGSSSEIEVPAK----TTHVLKHSVPLPTELSSEAKT 233
AVK +S +E LP K KT+ S E++ K +T K L T S K+
Sbjct: 287 AVKESSIRSVQETVLPIKKRKTRETVSIEVKEVVKPLLVSTLGEKSGKGLKTCKSPGRKS 346
Query: 234 KSESTSGATQFMPDPKLMDHGQSH 257
K S G + P +H H
Sbjct: 347 KESSPKGRSSSASSPPKKEHHHHH 370
>gi|95147555 microtubule-associated protein 1A [Homo sapiens]
Length = 2803
Score = 28.1 bits (61), Expect = 8.4
Identities = 26/91 (28%), Positives = 38/91 (41%), Gaps = 13/91 (14%)
Query: 178 AVKSLWT---KSSKEESLPKPKEKTKLGSSSEIEVPAKTTHVLKHSVPLPTELSSEAKTK 234
A +S W K +E S K E + + S + +P + L S P E+ S +
Sbjct: 1746 ATRSPWASDFKDFQESSPQKGLEVERWLAESPVGLPPEEEDKLTRS---PFEIISPPASP 1802
Query: 235 SE-------STSGATQFMPDPKLMDHGQSHP 258
E S G +PDPKLM H ++ P
Sbjct: 1803 PEMVGQRVPSAPGQESPIPDPKLMPHMKNEP 1833
>gi|13027378 glucosamine-6-phosphate deaminase 1 [Homo sapiens]
Length = 289
Score = 28.1 bits (61), Expect = 8.4
Identities = 29/124 (23%), Positives = 49/124 (39%), Gaps = 8/124 (6%)
Query: 97 GKDAYVYLKNPPRDFLPKMGVITVSGLAGLVSAR--KGSKFKKITYPLGLATLGATVCYP 154
G D ++ P + + V T++ L +AR G K T L T+G
Sbjct: 139 GPDGHIAFNEPGSSLVSRTRVKTLAMDTILANARFFDGELTKVPTMAL---TVGVGTVMD 195
Query: 155 VQSVIIAKVTAKKVYATSQQIFGAVKSLWTKSSKEESLPKPKEKTKLGSSSEIEVPAKTT 214
+ V+I A K +A + I V +WT S+ ++ P+ + +E+ KT
Sbjct: 196 AREVMILITGAHKAFALYKAIEEGVNHMWTVSAFQQ---HPRTVFVCDEDATLELKVKTV 252
Query: 215 HVLK 218
K
Sbjct: 253 KYFK 256
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.313 0.129 0.369
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,010,957
Number of Sequences: 37866
Number of extensions: 435322
Number of successful extensions: 1124
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 19
Number of HSP's that attempted gapping in prelim test: 1109
Number of HSP's gapped (non-prelim): 32
length of query: 268
length of database: 18,247,518
effective HSP length: 100
effective length of query: 168
effective length of database: 14,460,918
effective search space: 2429434224
effective search space used: 2429434224
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 61 (28.1 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.