Guide to the Human Genome
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Name: FAM183B Sequence: fasta or formatted (135aa) NCBI GI: 157427193
Description:

hypothetical protein LOC340286

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.9          8           2
 C cysteine            0.0          0           0
 D aspartate           6.7          9           2
 E glutamate           8.9         12           2
 F phenylalanine       1.5          2           1
 G glycine             3.0          4           1
 H histidine           8.1         11           2
 I isoleucine          3.7          5           1
 K lysine              7.4         10           2
 L leucine             8.9         12           1
 M methionine          3.0          4           1
 N asparagine          4.4          6           1
 P proline             5.2          7           1
 Q glutamine           5.2          7           1
 R arginine            8.9         12           2
 S serine              3.0          4           1
 T threonine           5.2          7           1
 V valine              5.2          7           2
 W tryptophan          2.2          3           1
 Y tyrosine            3.7          5           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   hypothetical protein LOC340286 
FAM183A               0.840   hCG23177 
APOOL                 0.023   apolipoprotein O-like 
KIAA1549              0.019   hypothetical protein LOC57670 
C3orf23               0.011   hypothetical protein LOC285343 isoform 1 
ZFP112                0.008   zinc finger protein 228 isoform 1 
ZFP112                0.008   zinc finger protein 228 isoform 2 
WBSCR22               0.008   Williams Beuren syndrome chromosome region 22 protei...
SMARCA2               0.008   SWI/SNF-related matrix-associated actin-dependent re...
SMARCA2               0.008   SWI/SNF-related matrix-associated actin-dependent re...
SPATC1                0.004   spermatogenesis and centriole associated 1 isoform ...
GRPEL1                0.004   GrpE-like 1, mitochondrial 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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