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Search of human proteins with 239746837
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239746837 PREDICTED: hypothetical protein XP_002344237 [Homo
sapiens]
(77 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239752326 PREDICTED: hypothetical protein [Homo sapiens] 157 1e-39
gi|239746837 PREDICTED: hypothetical protein XP_002344237 [Homo ... 157 1e-39
gi|28416956 GTPase, IMAP family member 8 [Homo sapiens] 30 0.32
gi|223972612 Crm, cramped-like [Homo sapiens] 28 1.6
gi|24308458 Lix1 homolog (mouse) like [Homo sapiens] 27 3.5
gi|4507955 YY1 transcription factor [Homo sapiens] 27 4.6
gi|239754110 PREDICTED: hypothetical protein XP_002345881 [Homo ... 26 6.0
gi|59806361 hypothetical protein LOC387104 [Homo sapiens] 26 7.9
gi|239757300 PREDICTED: hypothetical protein [Homo sapiens] 26 7.9
gi|239751805 PREDICTED: hypothetical protein XP_002348006 [Homo ... 26 7.9
gi|239746296 PREDICTED: hypothetical protein XP_002343726 [Homo ... 26 7.9
gi|186928829 dermokine isoform 4 precursor [Homo sapiens] 26 7.9
gi|186928827 dermokine isoform 5 precursor [Homo sapiens] 26 7.9
gi|186928825 dermokine isoform 3 precursor [Homo sapiens] 26 7.9
gi|33504489 dermokine isoform 2 precursor [Homo sapiens] 26 7.9
gi|222352135 hypothetical protein LOC133491 [Homo sapiens] 26 7.9
>gi|239752326 PREDICTED: hypothetical protein [Homo sapiens]
Length = 77
Score = 157 bits (398), Expect = 1e-39
Identities = 77/77 (100%), Positives = 77/77 (100%)
Query: 1 MCIDEGSREKNGSREEGVAGVKGAGESGGGSSLMCASWLSRVSRTGGLLSRSVAWTRKKA 60
MCIDEGSREKNGSREEGVAGVKGAGESGGGSSLMCASWLSRVSRTGGLLSRSVAWTRKKA
Sbjct: 1 MCIDEGSREKNGSREEGVAGVKGAGESGGGSSLMCASWLSRVSRTGGLLSRSVAWTRKKA 60
Query: 61 STAGCSTRHRMLVMGFL 77
STAGCSTRHRMLVMGFL
Sbjct: 61 STAGCSTRHRMLVMGFL 77
>gi|239746837 PREDICTED: hypothetical protein XP_002344237 [Homo
sapiens]
Length = 77
Score = 157 bits (398), Expect = 1e-39
Identities = 77/77 (100%), Positives = 77/77 (100%)
Query: 1 MCIDEGSREKNGSREEGVAGVKGAGESGGGSSLMCASWLSRVSRTGGLLSRSVAWTRKKA 60
MCIDEGSREKNGSREEGVAGVKGAGESGGGSSLMCASWLSRVSRTGGLLSRSVAWTRKKA
Sbjct: 1 MCIDEGSREKNGSREEGVAGVKGAGESGGGSSLMCASWLSRVSRTGGLLSRSVAWTRKKA 60
Query: 61 STAGCSTRHRMLVMGFL 77
STAGCSTRHRMLVMGFL
Sbjct: 61 STAGCSTRHRMLVMGFL 77
>gi|28416956 GTPase, IMAP family member 8 [Homo sapiens]
Length = 665
Score = 30.4 bits (67), Expect = 0.32
Identities = 21/62 (33%), Positives = 31/62 (50%), Gaps = 6/62 (9%)
Query: 6 GSREKNGSREEGV--AGVKGAGESGGGSSLM----CASWLSRVSRTGGLLSRSVAWTRKK 59
G + G+ E V G +GAG+S G+S++ + S S T LS S +W +KK
Sbjct: 238 GPEQNPGTSELTVLLVGKRGAGKSAAGNSILGRQAFQTGFSEQSVTQSFLSESRSWRKKK 297
Query: 60 AS 61
S
Sbjct: 298 VS 299
>gi|223972612 Crm, cramped-like [Homo sapiens]
Length = 1269
Score = 28.1 bits (61), Expect = 1.6
Identities = 16/41 (39%), Positives = 21/41 (51%)
Query: 12 GSREEGVAGVKGAGESGGGSSLMCASWLSRVSRTGGLLSRS 52
GS G +G +G G GGGSS S ++ + GG S S
Sbjct: 103 GSGNAGGSGPRGKGAEGGGSSSGNVSGVAPAAPAGGSRSSS 143
>gi|24308458 Lix1 homolog (mouse) like [Homo sapiens]
Length = 337
Score = 26.9 bits (58), Expect = 3.5
Identities = 17/56 (30%), Positives = 24/56 (42%)
Query: 8 REKNGSREEGVAGVKGAGESGGGSSLMCASWLSRVSRTGGLLSRSVAWTRKKASTA 63
RE+ SR+E +A M W+SR G LSR +A T ++ A
Sbjct: 250 RERQCSRQEVLAHYSHRALDDDIRHQMALDWVSREQSVPGALSRELASTERELDEA 305
>gi|4507955 YY1 transcription factor [Homo sapiens]
Length = 414
Score = 26.6 bits (57), Expect = 4.6
Identities = 18/50 (36%), Positives = 25/50 (50%), Gaps = 2/50 (4%)
Query: 15 EEGVAGVKGAGESGGGSSLMCASWLSRVSRTGGLLSRSVAWTRKKASTAG 64
E+ + V AG+SGGG S +S RV + GG S ++ A AG
Sbjct: 147 EQTLVTVAAAGKSGGGGS--SSSGGGRVKKGGGKKSGKKSYLSGGAGAAG 194
>gi|239754110 PREDICTED: hypothetical protein XP_002345881 [Homo
sapiens]
Length = 284
Score = 26.2 bits (56), Expect = 6.0
Identities = 21/68 (30%), Positives = 27/68 (39%), Gaps = 9/68 (13%)
Query: 6 GSREKNGSREEGVAGVKGAGESGGGSSLMCASWLSRVSRTGGLLS--RSVAWTRKKASTA 63
G E+ GS G G G GGG SR R GG R+ A R+ ++
Sbjct: 161 GGAERGGSGRSSAGGGGGGGGGGGGRG-------SRRGRGGGERGGPRAQAVRRRLSALR 213
Query: 64 GCSTRHRM 71
G R R+
Sbjct: 214 GRGRRRRL 221
>gi|59806361 hypothetical protein LOC387104 [Homo sapiens]
Length = 947
Score = 25.8 bits (55), Expect = 7.9
Identities = 13/26 (50%), Positives = 14/26 (53%), Gaps = 1/26 (3%)
Query: 6 GSREKNGSREEGVAGVKGAGESGGGS 31
G GSR G +GV G G GGGS
Sbjct: 224 GKTPGTGSRNSG-SGVAGGGSGGGGS 248
>gi|239757300 PREDICTED: hypothetical protein [Homo sapiens]
Length = 128
Score = 25.8 bits (55), Expect = 7.9
Identities = 18/63 (28%), Positives = 28/63 (44%), Gaps = 6/63 (9%)
Query: 12 GSREEGVAGVKGAGESGGGSSLMCASWLSRVSRTGGLLSR------SVAWTRKKASTAGC 65
G ++E GV+GAG GGG + + + +R G R A + + S AG
Sbjct: 41 GQKDEVEYGVRGAGRVGGGGVRPALAKVRKRARLGPFKPRRAGAGVDTAQAQSRLSRAGR 100
Query: 66 STR 68
+ R
Sbjct: 101 ALR 103
>gi|239751805 PREDICTED: hypothetical protein XP_002348006 [Homo
sapiens]
Length = 128
Score = 25.8 bits (55), Expect = 7.9
Identities = 18/63 (28%), Positives = 28/63 (44%), Gaps = 6/63 (9%)
Query: 12 GSREEGVAGVKGAGESGGGSSLMCASWLSRVSRTGGLLSR------SVAWTRKKASTAGC 65
G ++E GV+GAG GGG + + + +R G R A + + S AG
Sbjct: 41 GQKDEVEYGVRGAGRVGGGGVRPALAKVRKRARLGPFKPRRAGAGVDTAQAQSRLSRAGR 100
Query: 66 STR 68
+ R
Sbjct: 101 ALR 103
>gi|239746296 PREDICTED: hypothetical protein XP_002343726 [Homo
sapiens]
Length = 128
Score = 25.8 bits (55), Expect = 7.9
Identities = 18/63 (28%), Positives = 28/63 (44%), Gaps = 6/63 (9%)
Query: 12 GSREEGVAGVKGAGESGGGSSLMCASWLSRVSRTGGLLSR------SVAWTRKKASTAGC 65
G ++E GV+GAG GGG + + + +R G R A + + S AG
Sbjct: 41 GQKDEVEYGVRGAGRVGGGGVRPALAKVRKRARLGPFKPRRAGAGVDTAQAQSRLSRAGR 100
Query: 66 STR 68
+ R
Sbjct: 101 ALR 103
>gi|186928829 dermokine isoform 4 precursor [Homo sapiens]
Length = 386
Score = 25.8 bits (55), Expect = 7.9
Identities = 16/42 (38%), Positives = 20/42 (47%)
Query: 6 GSREKNGSREEGVAGVKGAGESGGGSSLMCASWLSRVSRTGG 47
GS ++GS G G G S GGSS +S S +GG
Sbjct: 247 GSGSQSGSSGSGSNGDNNNGSSSGGSSSGSSSGGSSGGSSGG 288
>gi|186928827 dermokine isoform 5 precursor [Homo sapiens]
Length = 398
Score = 25.8 bits (55), Expect = 7.9
Identities = 16/42 (38%), Positives = 20/42 (47%)
Query: 6 GSREKNGSREEGVAGVKGAGESGGGSSLMCASWLSRVSRTGG 47
GS ++GS G G G S GGSS +S S +GG
Sbjct: 247 GSGSQSGSSGSGSNGDNNNGSSSGGSSSGSSSGGSSGGSSGG 288
>gi|186928825 dermokine isoform 3 precursor [Homo sapiens]
Length = 416
Score = 25.8 bits (55), Expect = 7.9
Identities = 16/42 (38%), Positives = 20/42 (47%)
Query: 6 GSREKNGSREEGVAGVKGAGESGGGSSLMCASWLSRVSRTGG 47
GS ++GS G G G S GGSS +S S +GG
Sbjct: 247 GSGSQSGSSGSGSNGDNNNGSSSGGSSSGSSSGGSSGGSSGG 288
>gi|33504489 dermokine isoform 2 precursor [Homo sapiens]
Length = 476
Score = 25.8 bits (55), Expect = 7.9
Identities = 16/42 (38%), Positives = 20/42 (47%)
Query: 6 GSREKNGSREEGVAGVKGAGESGGGSSLMCASWLSRVSRTGG 47
GS ++GS G G G S GGSS +S S +GG
Sbjct: 247 GSGSQSGSSGSGSNGDNNNGSSSGGSSSGSSSGGSSGGSSGG 288
>gi|222352135 hypothetical protein LOC133491 [Homo sapiens]
Length = 176
Score = 25.8 bits (55), Expect = 7.9
Identities = 20/63 (31%), Positives = 29/63 (46%), Gaps = 7/63 (11%)
Query: 6 GSREKNGSREEGVAGVKGAGESGGGSSLMCASWLSRVSRTGGLLSRSVAWTRKKASTAGC 65
G R++ VAGV+G E GS L RV T G+ + + A ++ +AS
Sbjct: 48 GCRQEKPREAMAVAGVQGGSELPLGSQL-------RVPTTPGVEAAASASSQLRASRVQS 100
Query: 66 STR 68
TR
Sbjct: 101 GTR 103
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.315 0.129 0.388
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,010,658
Number of Sequences: 37866
Number of extensions: 111062
Number of successful extensions: 738
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 718
Number of HSP's gapped (non-prelim): 23
length of query: 77
length of database: 18,247,518
effective HSP length: 49
effective length of query: 28
effective length of database: 16,392,084
effective search space: 458978352
effective search space used: 458978352
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.