Guide to the Human Genome
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Name: LOC100288498 Sequence: fasta or formatted (77aa) NCBI GI: 239752326
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Other entries for this name:
alt mRNA {77aa} PREDICTED: hypothetical protein XP_002344237
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.8          6           1
 C cysteine            3.9          3           1
 D aspartate           1.3          1           1
 E glutamate           6.5          5           2
 F phenylalanine       1.3          1           1
 G glycine            16.9         13           3
 H histidine           1.3          1           1
 I isoleucine          1.3          1           1
 K lysine              5.2          4           2
 L leucine             7.8          6           2
 M methionine          5.2          4           1
 N asparagine          1.3          1           1
 P proline             0.0          0           0
 Q glutamine           0.0          0           0
 R arginine           10.4          8           1
 S serine             15.6         12           2
 T threonine           5.2          4           1
 V valine              6.5          5           1
 W tryptophan          2.6          2           1
 Y tyrosine            0.0          0           0
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC100288498          1.000   PREDICTED: hypothetical protein XP_002344237 
GIMAP8                0.038   GTPase, IMAP family member 8 
CRAMP1L               0.023   Crm, cramped-like 
LIX1L                 0.015   Lix1 homolog (mouse) like 
YY1                   0.015   YY1 transcription factor 
LOC100292082          0.008   PREDICTED: hypothetical protein XP_002345881 
C6orf174              0.008   hypothetical protein LOC387104 
LOC100293993          0.008   PREDICTED: hypothetical protein 
LOC100289824          0.008   PREDICTED: hypothetical protein XP_002348006 
LOC100287043          0.008   PREDICTED: hypothetical protein XP_002343726 
DMKN                  0.008   dermokine isoform 4 precursor 
DMKN                  0.008   dermokine isoform 5 precursor 
DMKN                  0.008   dermokine isoform 3 precursor 
DMKN                  0.008   dermokine isoform 2 precursor 
C5orf47               0.008   hypothetical protein LOC133491 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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