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Search of human proteins with 239746745
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239746745 PREDICTED: hypothetical protein XP_002343805 [Homo
sapiens]
(101 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239746745 PREDICTED: hypothetical protein XP_002343805 [Homo ... 213 3e-56
gi|39930315 neurexophilin 4 [Homo sapiens] 35 0.010
gi|239752657 PREDICTED: hypothetical protein [Homo sapiens] 30 0.54
gi|239741001 PREDICTED: hypothetical protein XP_002342060 [Homo ... 30 0.54
gi|4502365 NK3 homeobox 2 [Homo sapiens] 29 0.70
gi|25777608 NLR family member X1 isoform 1 [Homo sapiens] 29 0.91
gi|25777610 NLR family member X1 isoform 2 [Homo sapiens] 29 0.91
gi|239757110 PREDICTED: hypothetical protein [Homo sapiens] 28 1.2
gi|124249392 DNL-type zinc finger [Homo sapiens] 28 1.2
gi|239758008 PREDICTED: hypothetical protein XP_002346266 [Homo ... 28 2.0
gi|239756243 PREDICTED: similar to hCG2038990 [Homo sapiens] 28 2.0
gi|239757024 PREDICTED: hypothetical protein [Homo sapiens] 27 2.7
gi|239751545 PREDICTED: hypothetical protein [Homo sapiens] 27 2.7
gi|239746057 PREDICTED: hypothetical protein XP_002343638 [Homo ... 27 2.7
gi|169161029 PREDICTED: hypothetical protein [Homo sapiens] 27 3.5
gi|194018553 solute carrier family 9 isoform 3 regulator 2 isofo... 27 3.5
gi|71897229 solute carrier family 9 isoform 3 regulator 2 isofor... 27 3.5
gi|30425563 reticulon 4 receptor-like 2 [Homo sapiens] 27 3.5
gi|239749878 PREDICTED: hypothetical protein [Homo sapiens] 26 5.9
gi|239744180 PREDICTED: hypothetical protein XP_002343069 [Homo ... 26 5.9
gi|4826974 RNA binding motif protein, Y-linked, family 1, member... 26 5.9
gi|34303937 RNA binding motif protein, Y-linked, family 1, membe... 26 5.9
gi|154937380 hypothetical protein LOC642475 [Homo sapiens] 26 5.9
gi|56090529 RNA binding motif protein, Y-linked, family 1, membe... 26 5.9
gi|110735431 kinesin light chain 1 isoform 2 [Homo sapiens] 26 7.7
gi|241896898 family with sequence similarity 20, member A [Homo ... 26 7.7
>gi|239746745 PREDICTED: hypothetical protein XP_002343805 [Homo
sapiens]
Length = 101
Score = 213 bits (542), Expect = 3e-56
Identities = 101/101 (100%), Positives = 101/101 (100%)
Query: 1 MGGGHRAEQRQQGREEALQFGLVFVESAPAPGVEWPRLAAAPALACHRRPRWRWTGRHLA 60
MGGGHRAEQRQQGREEALQFGLVFVESAPAPGVEWPRLAAAPALACHRRPRWRWTGRHLA
Sbjct: 1 MGGGHRAEQRQQGREEALQFGLVFVESAPAPGVEWPRLAAAPALACHRRPRWRWTGRHLA 60
Query: 61 ALRGLGPAGALRRLRTRLGHQDGLLPNFQDHYLLKSDAAAT 101
ALRGLGPAGALRRLRTRLGHQDGLLPNFQDHYLLKSDAAAT
Sbjct: 61 ALRGLGPAGALRRLRTRLGHQDGLLPNFQDHYLLKSDAAAT 101
>gi|39930315 neurexophilin 4 [Homo sapiens]
Length = 308
Score = 35.4 bits (80), Expect = 0.010
Identities = 19/50 (38%), Positives = 23/50 (46%)
Query: 28 APAPGVEWPRLAAAPALACHRRPRWRWTGRHLAALRGLGPAGALRRLRTR 77
A APG + P ++ L R W W H AL G AGAL RT+
Sbjct: 43 AGAPGQQLPEPRSSDGLGVGRAWSWAWPTNHTGALARAGAAGALPAQRTK 92
>gi|239752657 PREDICTED: hypothetical protein [Homo sapiens]
Length = 168
Score = 29.6 bits (65), Expect = 0.54
Identities = 19/55 (34%), Positives = 26/55 (47%), Gaps = 7/55 (12%)
Query: 30 APGVEWPRLAAAPAL--ACHRRPRWRWTGRHLAALRGLGPAGALRRLRTRLGHQD 82
+PG+ P +A AP L ACH RW+ + RG A L + + LG D
Sbjct: 44 SPGISEPEVAGAPGLAGACH-----RWSQQDEEQQRGQHVAQLLEEVGSALGDDD 93
>gi|239741001 PREDICTED: hypothetical protein XP_002342060 [Homo
sapiens]
Length = 168
Score = 29.6 bits (65), Expect = 0.54
Identities = 19/55 (34%), Positives = 26/55 (47%), Gaps = 7/55 (12%)
Query: 30 APGVEWPRLAAAPAL--ACHRRPRWRWTGRHLAALRGLGPAGALRRLRTRLGHQD 82
+PG+ P +A AP L ACH RW+ + RG A L + + LG D
Sbjct: 44 SPGISEPEVAGAPGLAGACH-----RWSQQDEEQQRGQHVAQLLEEVGSALGDDD 93
>gi|4502365 NK3 homeobox 2 [Homo sapiens]
Length = 333
Score = 29.3 bits (64), Expect = 0.70
Identities = 18/44 (40%), Positives = 20/44 (45%), Gaps = 5/44 (11%)
Query: 21 GLVFVESAPAPGVEWPRLAAAPALACHRRPRWRWTGRHLAALRG 64
GL E PAPG +AAAPA+ C WR G A G
Sbjct: 26 GLAAPEGRPAPGGTAASVAAAPAVCC-----WRLFGERDAGALG 64
>gi|25777608 NLR family member X1 isoform 1 [Homo sapiens]
Length = 975
Score = 28.9 bits (63), Expect = 0.91
Identities = 19/50 (38%), Positives = 23/50 (46%), Gaps = 3/50 (6%)
Query: 25 VESAPAPGVE---WPRLAAAPALACHRRPRWRWTGRHLAALRGLGPAGAL 71
V+SAP PG +P +A A+ HRR W R R GP AL
Sbjct: 57 VDSAPPPGRHGRLFPSASATEAIQRHRRNLAEWFSRLPREERQFGPTFAL 106
>gi|25777610 NLR family member X1 isoform 2 [Homo sapiens]
Length = 921
Score = 28.9 bits (63), Expect = 0.91
Identities = 19/50 (38%), Positives = 23/50 (46%), Gaps = 3/50 (6%)
Query: 25 VESAPAPGVE---WPRLAAAPALACHRRPRWRWTGRHLAALRGLGPAGAL 71
V+SAP PG +P +A A+ HRR W R R GP AL
Sbjct: 57 VDSAPPPGRHGRLFPSASATEAIQRHRRNLAEWFSRLPREERQFGPTFAL 106
>gi|239757110 PREDICTED: hypothetical protein [Homo sapiens]
Length = 192
Score = 28.5 bits (62), Expect = 1.2
Identities = 18/68 (26%), Positives = 25/68 (36%)
Query: 3 GGHRAEQRQQGREEALQFGLVFVESAPAPGVEWPRLAAAPALACHRRPRWRWTGRHLAAL 62
GG + +R +G E + G V + P P APA WRW A+
Sbjct: 106 GGSQGHRRCRGEGEGQRRGCVEKQPRPTPTPACELTGLAPAPPTPPPAWWRWARTGTRAM 165
Query: 63 RGLGPAGA 70
G G+
Sbjct: 166 GGAASTGS 173
>gi|124249392 DNL-type zinc finger [Homo sapiens]
Length = 178
Score = 28.5 bits (62), Expect = 1.2
Identities = 17/40 (42%), Positives = 22/40 (55%), Gaps = 2/40 (5%)
Query: 35 WPRLAAAPALACHRRPRWRWTGRHLAALRGLGPAGALRRL 74
W R A P +A RR W W R ++ +G GPA AL R+
Sbjct: 27 WGR-GARPEVAGRRRA-WAWGWRRSSSEQGPGPAAALGRV 64
>gi|239758008 PREDICTED: hypothetical protein XP_002346266 [Homo
sapiens]
Length = 316
Score = 27.7 bits (60), Expect = 2.0
Identities = 20/64 (31%), Positives = 32/64 (50%), Gaps = 4/64 (6%)
Query: 8 EQRQQGREEALQFGLVFVESAPAPGV-EWPRLAAAPALACHRRPRWRWTGRHLAALRGLG 66
+ R+ GR++ ++G V G + P+ AAAP H++PR +W AA +
Sbjct: 216 KSRRWGRKKPGRWGQEAVAGETCGGGGKKPQKAAAPGAKSHKKPRRQW---QKAAAEKVA 272
Query: 67 PAGA 70
AGA
Sbjct: 273 VAGA 276
>gi|239756243 PREDICTED: similar to hCG2038990 [Homo sapiens]
Length = 185
Score = 27.7 bits (60), Expect = 2.0
Identities = 13/27 (48%), Positives = 14/27 (51%)
Query: 42 PALACHRRPRWRWTGRHLAALRGLGPA 68
P +CH RP W GR L L GPA
Sbjct: 17 PRRSCHGRPAACWQGRWLILLINGGPA 43
>gi|239757024 PREDICTED: hypothetical protein [Homo sapiens]
Length = 89
Score = 27.3 bits (59), Expect = 2.7
Identities = 21/61 (34%), Positives = 28/61 (45%), Gaps = 13/61 (21%)
Query: 7 AEQRQQGREE--ALQFGLVFVES-----------APAPGVEWPRLAAAPALACHRRPRWR 53
AEQR+ GR+E A + G++ A A V+ PR + L HRR R R
Sbjct: 23 AEQRKAGRQEPKAQETGVLLTVRRSVGPAEVAGLARAAVVQSPRCSLKVVLLSHRRRRCR 82
Query: 54 W 54
W
Sbjct: 83 W 83
>gi|239751545 PREDICTED: hypothetical protein [Homo sapiens]
Length = 89
Score = 27.3 bits (59), Expect = 2.7
Identities = 21/61 (34%), Positives = 28/61 (45%), Gaps = 13/61 (21%)
Query: 7 AEQRQQGREE--ALQFGLVFVES-----------APAPGVEWPRLAAAPALACHRRPRWR 53
AEQR+ GR+E A + G++ A A V+ PR + L HRR R R
Sbjct: 23 AEQRKAGRQEPKAQETGVLLTVRRSVGPAEVAGLARAAVVQSPRCSLKVVLLSHRRRRCR 82
Query: 54 W 54
W
Sbjct: 83 W 83
>gi|239746057 PREDICTED: hypothetical protein XP_002343638 [Homo
sapiens]
Length = 89
Score = 27.3 bits (59), Expect = 2.7
Identities = 21/61 (34%), Positives = 28/61 (45%), Gaps = 13/61 (21%)
Query: 7 AEQRQQGREE--ALQFGLVFVES-----------APAPGVEWPRLAAAPALACHRRPRWR 53
AEQR+ GR+E A + G++ A A V+ PR + L HRR R R
Sbjct: 23 AEQRKAGRQEPKAQETGVLLTVRRSVGPAEVAGLARAAVVQSPRCSLKVVLLSHRRRRCR 82
Query: 54 W 54
W
Sbjct: 83 W 83
>gi|169161029 PREDICTED: hypothetical protein [Homo sapiens]
Length = 268
Score = 26.9 bits (58), Expect = 3.5
Identities = 17/39 (43%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
Query: 29 PAPGVEWPRLAAAPALACHRRPRWRWTGRHLAALRGLGP 67
P+PG + AAPA A HR+PR R LR L P
Sbjct: 133 PSPGARGA-VGAAPAAARHRKPRGRSRRAPQMPLRVLPP 170
>gi|194018553 solute carrier family 9 isoform 3 regulator 2 isoform
a [Homo sapiens]
Length = 337
Score = 26.9 bits (58), Expect = 3.5
Identities = 13/32 (40%), Positives = 16/32 (50%)
Query: 49 RPRWRWTGRHLAALRGLGPAGALRRLRTRLGH 80
+P W TG H + +G LR LR RL H
Sbjct: 122 KPDWAHTGSHSSEAGKKDVSGPLRELRPRLCH 153
>gi|71897229 solute carrier family 9 isoform 3 regulator 2 isoform b
[Homo sapiens]
Length = 326
Score = 26.9 bits (58), Expect = 3.5
Identities = 13/32 (40%), Positives = 16/32 (50%)
Query: 49 RPRWRWTGRHLAALRGLGPAGALRRLRTRLGH 80
+P W TG H + +G LR LR RL H
Sbjct: 122 KPDWAHTGSHSSEAGKKDVSGPLRELRPRLCH 153
>gi|30425563 reticulon 4 receptor-like 2 [Homo sapiens]
Length = 420
Score = 26.9 bits (58), Expect = 3.5
Identities = 14/31 (45%), Positives = 16/31 (51%), Gaps = 1/31 (3%)
Query: 28 APAPGVEWPRLAAAP-ALACHRRPRWRWTGR 57
A P +E+ RL A P A C RP W W R
Sbjct: 248 ADLPSLEFLRLNANPWACDCRARPLWAWFQR 278
>gi|239749878 PREDICTED: hypothetical protein [Homo sapiens]
Length = 309
Score = 26.2 bits (56), Expect = 5.9
Identities = 22/67 (32%), Positives = 28/67 (41%), Gaps = 10/67 (14%)
Query: 8 EQRQQGREEALQFGLVFVESAPAPGVEWPRLAAAPALACHRRPRWRWTGRHLAALRGLGP 67
+QRQ L FG V ++ AL HR R GR + ALR LG
Sbjct: 185 QQRQPAARLLLHFGQALVLQ---------QVGQPHALVAHRVAE-RQVGRDVKALRRLGV 234
Query: 68 AGALRRL 74
A++RL
Sbjct: 235 GAAVQRL 241
>gi|239744180 PREDICTED: hypothetical protein XP_002343069 [Homo
sapiens]
Length = 309
Score = 26.2 bits (56), Expect = 5.9
Identities = 22/67 (32%), Positives = 28/67 (41%), Gaps = 10/67 (14%)
Query: 8 EQRQQGREEALQFGLVFVESAPAPGVEWPRLAAAPALACHRRPRWRWTGRHLAALRGLGP 67
+QRQ L FG V ++ AL HR R GR + ALR LG
Sbjct: 185 QQRQPAARLLLHFGQALVLQ---------QVGQPHALVAHRVAE-RQVGRDVKALRRLGV 234
Query: 68 AGALRRL 74
A++RL
Sbjct: 235 GAAVQRL 241
>gi|4826974 RNA binding motif protein, Y-linked, family 1, member A1
[Homo sapiens]
Length = 496
Score = 26.2 bits (56), Expect = 5.9
Identities = 15/46 (32%), Positives = 24/46 (52%), Gaps = 2/46 (4%)
Query: 48 RRPRWRWTGRHL--AALRGLGPAGALRRLRTRLGHQDGLLPNFQDH 91
++P ++ GR A+ R P+G+LR R G G LP+ + H
Sbjct: 84 KKPSFQSGGRRRPPASSRNRSPSGSLRSARGSRGGTRGWLPSHEGH 129
>gi|34303937 RNA binding motif protein, Y-linked, family 1, member F
[Homo sapiens]
Length = 496
Score = 26.2 bits (56), Expect = 5.9
Identities = 15/46 (32%), Positives = 24/46 (52%), Gaps = 2/46 (4%)
Query: 48 RRPRWRWTGRHL--AALRGLGPAGALRRLRTRLGHQDGLLPNFQDH 91
++P ++ GR A+ R P+G+LR R G G LP+ + H
Sbjct: 84 KKPSFQSGGRRRPPASSRNRSPSGSLRSARGSSGGTRGWLPSHEGH 129
>gi|154937380 hypothetical protein LOC642475 [Homo sapiens]
Length = 719
Score = 26.2 bits (56), Expect = 5.9
Identities = 27/74 (36%), Positives = 33/74 (44%), Gaps = 11/74 (14%)
Query: 14 REEALQFGLVFVESAPAPGVEWPRLAAAPALACHRRPRWRWTGRHLAALRG--------- 64
REE + L+ + P P V W L LA +RR + R L AL G
Sbjct: 398 REEVILERLLTWQGDPEPTVRWLGLLGLGHLALNRR-KVRHVSTLLPALLGALGEGDARL 456
Query: 65 LGPA-GALRRLRTR 77
+G A GALRRL R
Sbjct: 457 VGAALGALRRLLLR 470
>gi|56090529 RNA binding motif protein, Y-linked, family 1, member J
[Homo sapiens]
Length = 496
Score = 26.2 bits (56), Expect = 5.9
Identities = 15/46 (32%), Positives = 24/46 (52%), Gaps = 2/46 (4%)
Query: 48 RRPRWRWTGRHL--AALRGLGPAGALRRLRTRLGHQDGLLPNFQDH 91
++P ++ GR A+ R P+G+LR R G G LP+ + H
Sbjct: 84 KKPSFQSGGRRRPPASSRNRSPSGSLRSARGSSGGTRGWLPSHEGH 129
>gi|110735431 kinesin light chain 1 isoform 2 [Homo sapiens]
Length = 573
Score = 25.8 bits (55), Expect = 7.7
Identities = 16/48 (33%), Positives = 22/48 (45%), Gaps = 6/48 (12%)
Query: 16 EALQFGLVFVESAPAPG------VEWPRLAAAPALACHRRPRWRWTGR 57
E+L +V ES P G VEW + A C +R + +W GR
Sbjct: 523 ESLNVDVVKYESGPDGGEEVSMSVEWNGGVSGRASFCGKRQQQQWPGR 570
>gi|241896898 family with sequence similarity 20, member A [Homo
sapiens]
Length = 541
Score = 25.8 bits (55), Expect = 7.7
Identities = 14/33 (42%), Positives = 16/33 (48%)
Query: 26 ESAPAPGVEWPRLAAAPALACHRRPRWRWTGRH 58
E P G E LA+ AL +RR RW RH
Sbjct: 105 EEPPLLGAEDSLLASQEALRYYRRKVARWNRRH 137
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.323 0.138 0.451
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,398,853
Number of Sequences: 37866
Number of extensions: 196846
Number of successful extensions: 550
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 16
Number of HSP's that attempted gapping in prelim test: 540
Number of HSP's gapped (non-prelim): 26
length of query: 101
length of database: 18,247,518
effective HSP length: 72
effective length of query: 29
effective length of database: 15,521,166
effective search space: 450113814
effective search space used: 450113814
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.