Guide to the Human Genome
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Name: LOC100289281 Sequence: fasta or formatted (309aa) NCBI GI: 239749878
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Other entries for this name:
alt mRNA {309aa} PREDICTED: hypothetical protein XP_002343069
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            10.7         33           2
 C cysteine            2.6          8           1
 D aspartate           1.6          5           1
 E glutamate           3.9         12           2
 F phenylalanine       3.2         10           4
 G glycine             8.4         26           3
 H histidine           3.6         11           1
 I isoleucine          2.9          9           1
 K lysine              1.3          4           1
 L leucine            10.7         33           3
 M methionine          1.6          5           1
 N asparagine          0.0          0           0
 P proline             8.7         27           2
 Q glutamine           7.1         22           3
 R arginine           14.9         46           4
 S serine              7.4         23           3
 T threonine           2.6          8           2
 V valine              8.1         25           3
 W tryptophan          0.6          2           1
 Y tyrosine            0.0          0           0
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC100289281          1.000   PREDICTED: hypothetical protein XP_002343069 
F8A1                  0.020   coagulation factor VIII-associated protein 
F8A3                  0.020   coagulation factor VIII-associated (intronic transcr...
F8A2                  0.020   coagulation factor VIII-associated (intronic transcr...
LOC100132345          0.019   PREDICTED: hypothetical protein 
LOC100293036          0.013   PREDICTED: hypothetical protein 
LOC100293865          0.013   PREDICTED: hypothetical protein 
LOC100290409          0.013   PREDICTED: hypothetical protein XP_002347745 
LOC100289975          0.013   PREDICTED: hypothetical protein XP_002347602 
LOC100288043          0.013   PREDICTED: hypothetical protein XP_002343426 
LOC100293902          0.013   PREDICTED: similar to hCG1986016 
LOC100288822          0.013   PREDICTED: hypothetical protein XP_002343515 
ANKS6                 0.013   ankyrin repeat and sterile alpha motif domain contai...
LOC100128074          0.012   PREDICTED: hypothetical protein 
KIFC2                 0.012   kinesin family member C2 
SRRM1                 0.012   serine/arginine repetitive matrix 1 
SH2B3                 0.012   SH2B adaptor protein 3 
ZYG11A                0.012   PREDICTED: zyg-11 homolog A (C. elegans) 
ZYG11A                0.012   PREDICTED: zyg-11 homolog A (C. elegans) 
ZYG11A                0.012   PREDICTED: zyg-11 homolog A 
ZYG11A                0.012   zyg-11 homolog A 
CCDC120               0.010   coiled-coil domain containing 120 isoform 3 
CCDC120               0.010   coiled-coil domain containing 120 isoform 4 
CCDC120               0.010   coiled-coil domain containing 120 isoform 2 
CCDC120               0.010   coiled-coil domain containing 120 isoform 1 
LOC100293107          0.010   PREDICTED: hypothetical protein 
LOC100290679          0.010   PREDICTED: hypothetical protein XP_002347834 
LOC100128489          0.010   PREDICTED: hypothetical protein 
LOC100288571          0.010   PREDICTED: hypothetical protein XP_002343612 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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