Guide to the Human Genome
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Name: LOC100286921 Sequence: fasta or formatted (89aa) NCBI GI: 239746057
Description:

PREDICTED: hypothetical protein XP_002343638

Not currently referenced in the text

Other entries for this name:
alt mRNA {89aa} PREDICTED: hypothetical protein
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            13.5         12           2
 C cysteine            3.4          3           1
 D aspartate           0.0          0           0
 E glutamate           6.7          6           1
 F phenylalanine       2.2          2           1
 G glycine             5.6          5           1
 H histidine           1.1          1           1
 I isoleucine          0.0          0           0
 K lysine              3.4          3           1
 L leucine            14.6         13           4
 M methionine          1.1          1           1
 N asparagine          0.0          0           0
 P proline             4.5          4           1
 Q glutamine           4.5          4           1
 R arginine           16.9         15           4
 S serine              6.7          6           1
 T threonine           3.4          3           1
 V valine             10.1          9           2
 W tryptophan          2.2          2           1
 Y tyrosine            0.0          0           0
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002343638 
LOC100293082          1.000   PREDICTED: hypothetical protein 
LOC100286921          1.000   PREDICTED: hypothetical protein 
FASTKD5               0.026   FAST kinase domains 5 
PCSK1N                0.026   proprotein convertase subtilisin/kexin type 1 inhibit...
LOC100287184          0.013   PREDICTED: hypothetical protein XP_002343805 
PANX2                 0.013   pannexin 2 isoform 1 
PANX2                 0.013   pannexin 2 isoform 2 
MMP17                 0.013   matrix metalloproteinase 17 preproprotein 
CROCC                 0.007   ciliary rootlet coiled-coil 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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