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Search of human proteins with 239746640
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239746640 PREDICTED: hypothetical protein XP_002344234 [Homo
sapiens]
(165 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239746640 PREDICTED: hypothetical protein XP_002344234 [Homo ... 357 3e-99
gi|239757626 PREDICTED: hypothetical protein XP_002345507 [Homo ... 306 7e-84
gi|239754586 PREDICTED: hypothetical protein [Homo sapiens] 34 0.066
gi|239754580 PREDICTED: hypothetical protein [Homo sapiens] 34 0.066
gi|239749145 PREDICTED: hypothetical protein XP_002346924 [Homo ... 34 0.066
gi|239743184 PREDICTED: hypothetical protein XP_002342799 [Homo ... 34 0.066
gi|239508849 PREDICTED: hypothetical protein [Homo sapiens] 34 0.066
gi|169204930 PREDICTED: hypothetical protein [Homo sapiens] 32 0.25
gi|239750393 PREDICTED: hypothetical protein [Homo sapiens] 32 0.25
gi|239744694 PREDICTED: hypothetical protein [Homo sapiens] 32 0.25
gi|239743189 PREDICTED: hypothetical protein XP_002342800 [Homo ... 32 0.25
gi|239508858 PREDICTED: hypothetical protein [Homo sapiens] 32 0.25
gi|4885237 forkhead box C2 [Homo sapiens] 30 0.95
gi|119395716 forkhead box C1 [Homo sapiens] 30 0.95
gi|148539855 epidermal growth factor receptor pathway substrate ... 30 0.95
gi|148539853 epidermal growth factor receptor pathway substrate ... 30 0.95
gi|148596988 mucoepidermoid carcinoma translocated 1 isoform 3 [... 29 1.6
gi|148596965 mucoepidermoid carcinoma translocated 1 isoform 1 [... 29 1.6
gi|239756839 PREDICTED: hypothetical protein [Homo sapiens] 29 1.6
gi|239751352 PREDICTED: hypothetical protein XP_002347815 [Homo ... 29 1.6
gi|239745851 PREDICTED: hypothetical protein XP_002343605 [Homo ... 29 1.6
gi|239740933 PREDICTED: hypothetical protein XP_002344111 [Homo ... 29 1.6
gi|28872796 CCAAT/enhancer binding protein beta [Homo sapiens] 29 2.1
gi|47078278 choline kinase alpha isoform b [Homo sapiens] 28 2.8
gi|47078276 choline kinase alpha isoform a [Homo sapiens] 28 2.8
gi|102469037 jun D proto-oncogene [Homo sapiens] 28 2.8
gi|188497618 connector enhancer of kinase suppressor of Ras 1 [H... 28 2.8
gi|148229134 ring finger and KH domain containing 2 [Homo sapiens] 28 2.8
gi|222136692 melanocyte-specific gene 1 isoform 1 [Homo sapiens] 28 3.6
gi|222136690 melanocyte-specific gene 1 isoform 1 [Homo sapiens] 28 3.6
>gi|239746640 PREDICTED: hypothetical protein XP_002344234 [Homo
sapiens]
Length = 165
Score = 357 bits (916), Expect = 3e-99
Identities = 165/165 (100%), Positives = 165/165 (100%)
Query: 1 MAGPDTGTQWWCHTQTTGGTHGFDSHNAQTRLQSSRDVGRGLLALLHWNRETKVAGHSGG 60
MAGPDTGTQWWCHTQTTGGTHGFDSHNAQTRLQSSRDVGRGLLALLHWNRETKVAGHSGG
Sbjct: 1 MAGPDTGTQWWCHTQTTGGTHGFDSHNAQTRLQSSRDVGRGLLALLHWNRETKVAGHSGG 60
Query: 61 AWGGPLAASLGLVRLPHFVEQLHHFIIDDKHYGHIQADPAQAGDSALVESGPSFFRICKP 120
AWGGPLAASLGLVRLPHFVEQLHHFIIDDKHYGHIQADPAQAGDSALVESGPSFFRICKP
Sbjct: 61 AWGGPLAASLGLVRLPHFVEQLHHFIIDDKHYGHIQADPAQAGDSALVESGPSFFRICKP 120
Query: 121 QSHVFRYLCASRPYGGHQQAGAQQLALAWSPLPLPFPAPPPASGS 165
QSHVFRYLCASRPYGGHQQAGAQQLALAWSPLPLPFPAPPPASGS
Sbjct: 121 QSHVFRYLCASRPYGGHQQAGAQQLALAWSPLPLPFPAPPPASGS 165
>gi|239757626 PREDICTED: hypothetical protein XP_002345507 [Homo
sapiens]
Length = 609
Score = 306 bits (783), Expect = 7e-84
Identities = 141/146 (96%), Positives = 142/146 (97%)
Query: 1 MAGPDTGTQWWCHTQTTGGTHGFDSHNAQTRLQSSRDVGRGLLALLHWNRETKVAGHSGG 60
MAGPDTGTQWWCHTQTTGGTHGFDSHNAQTRLQSSRDVGRGLLALLHWNRETKVAGHSGG
Sbjct: 1 MAGPDTGTQWWCHTQTTGGTHGFDSHNAQTRLQSSRDVGRGLLALLHWNRETKVAGHSGG 60
Query: 61 AWGGPLAASLGLVRLPHFVEQLHHFIIDDKHYGHIQADPAQAGDSALVESGPSFFRICKP 120
AWGGPLAASLGLVRLPHFVEQLHHFIIDDKHYGHIQADPAQAGDSALVESGPSFFRICKP
Sbjct: 61 AWGGPLAASLGLVRLPHFVEQLHHFIIDDKHYGHIQADPAQAGDSALVESGPSFFRICKP 120
Query: 121 QSHVFRYLCASRPYGGHQQAGAQQLA 146
QSHVFRYLCASRPYGGHQQ G + A
Sbjct: 121 QSHVFRYLCASRPYGGHQQGGHDEEA 146
>gi|239754586 PREDICTED: hypothetical protein [Homo sapiens]
Length = 193
Score = 33.9 bits (76), Expect = 0.066
Identities = 20/42 (47%), Positives = 23/42 (54%), Gaps = 2/42 (4%)
Query: 2 AGPDTGTQWWCHTQTTG--GTHGFDSHNAQTRLQSSRDVGRG 41
AGPD+ TQ CH QTTG GT G Q Q++ GRG
Sbjct: 17 AGPDSWTQAQCHVQTTGRHGTRGQMDVTPQCTGQATELEGRG 58
>gi|239754580 PREDICTED: hypothetical protein [Homo sapiens]
Length = 193
Score = 33.9 bits (76), Expect = 0.066
Identities = 20/42 (47%), Positives = 23/42 (54%), Gaps = 2/42 (4%)
Query: 2 AGPDTGTQWWCHTQTTG--GTHGFDSHNAQTRLQSSRDVGRG 41
AGPD+ TQ CH QTTG GT G Q Q++ GRG
Sbjct: 17 AGPDSWTQAQCHVQTTGRHGTRGQMDVTPQCTGQATELEGRG 58
>gi|239749145 PREDICTED: hypothetical protein XP_002346924 [Homo
sapiens]
Length = 193
Score = 33.9 bits (76), Expect = 0.066
Identities = 20/42 (47%), Positives = 23/42 (54%), Gaps = 2/42 (4%)
Query: 2 AGPDTGTQWWCHTQTTG--GTHGFDSHNAQTRLQSSRDVGRG 41
AGPD+ TQ CH QTTG GT G Q Q++ GRG
Sbjct: 17 AGPDSWTQAQCHVQTTGRHGTRGQMDVTPQCTGQATELEGRG 58
>gi|239743184 PREDICTED: hypothetical protein XP_002342799 [Homo
sapiens]
Length = 193
Score = 33.9 bits (76), Expect = 0.066
Identities = 20/42 (47%), Positives = 23/42 (54%), Gaps = 2/42 (4%)
Query: 2 AGPDTGTQWWCHTQTTG--GTHGFDSHNAQTRLQSSRDVGRG 41
AGPD+ TQ CH QTTG GT G Q Q++ GRG
Sbjct: 17 AGPDSWTQAQCHVQTTGRHGTRGQMDVTPQCTGQATELEGRG 58
>gi|239508849 PREDICTED: hypothetical protein [Homo sapiens]
Length = 193
Score = 33.9 bits (76), Expect = 0.066
Identities = 20/42 (47%), Positives = 23/42 (54%), Gaps = 2/42 (4%)
Query: 2 AGPDTGTQWWCHTQTTG--GTHGFDSHNAQTRLQSSRDVGRG 41
AGPD+ TQ CH QTTG GT G Q Q++ GRG
Sbjct: 17 AGPDSWTQAQCHVQTTGRHGTRGQMDVTPQCTGQATELEGRG 58
>gi|169204930 PREDICTED: hypothetical protein [Homo sapiens]
Length = 373
Score = 32.0 bits (71), Expect = 0.25
Identities = 26/82 (31%), Positives = 35/82 (42%), Gaps = 16/82 (19%)
Query: 93 GHIQADPAQAGDSALVESG----PSFFRICKPQ-----SHVFRYLCASRPYGGHQQAGAQ 143
GH +AD G A + +G P + C+ + +H FR + P+ H A
Sbjct: 286 GHRRADGRARGGCAQLRAGTPSAPGGLQDCRGRQGEENAHPFR---SGAPFSPHPHASRS 342
Query: 144 QLALAWSPLPLPFP----APPP 161
LA PLP P P APPP
Sbjct: 343 TLAAQLLPLPQPPPPPKLAPPP 364
>gi|239750393 PREDICTED: hypothetical protein [Homo sapiens]
Length = 373
Score = 32.0 bits (71), Expect = 0.25
Identities = 26/82 (31%), Positives = 35/82 (42%), Gaps = 16/82 (19%)
Query: 93 GHIQADPAQAGDSALVESG----PSFFRICKPQ-----SHVFRYLCASRPYGGHQQAGAQ 143
GH +AD G A + +G P + C+ + +H FR + P+ H A
Sbjct: 286 GHRRADGRARGGCAQLRAGTPSAPGGLQDCRGRQGEENAHPFR---SGAPFSPHPHASRS 342
Query: 144 QLALAWSPLPLPFP----APPP 161
LA PLP P P APPP
Sbjct: 343 TLAAQLLPLPQPPPPPKLAPPP 364
>gi|239744694 PREDICTED: hypothetical protein [Homo sapiens]
Length = 373
Score = 32.0 bits (71), Expect = 0.25
Identities = 26/82 (31%), Positives = 35/82 (42%), Gaps = 16/82 (19%)
Query: 93 GHIQADPAQAGDSALVESG----PSFFRICKPQ-----SHVFRYLCASRPYGGHQQAGAQ 143
GH +AD G A + +G P + C+ + +H FR + P+ H A
Sbjct: 286 GHRRADGRARGGCAQLRAGTPSAPGGLQDCRGRQGEENAHPFR---SGAPFSPHPHASRS 342
Query: 144 QLALAWSPLPLPFP----APPP 161
LA PLP P P APPP
Sbjct: 343 TLAAQLLPLPQPPPPPKLAPPP 364
>gi|239743189 PREDICTED: hypothetical protein XP_002342800 [Homo
sapiens]
Length = 193
Score = 32.0 bits (71), Expect = 0.25
Identities = 19/42 (45%), Positives = 22/42 (52%), Gaps = 2/42 (4%)
Query: 2 AGPDTGTQWWCHTQTTG--GTHGFDSHNAQTRLQSSRDVGRG 41
AGPD+ TQ CH TTG GT G Q Q++ GRG
Sbjct: 17 AGPDSWTQAQCHVHTTGRHGTRGQMDVTPQCTGQATELEGRG 58
>gi|239508858 PREDICTED: hypothetical protein [Homo sapiens]
Length = 193
Score = 32.0 bits (71), Expect = 0.25
Identities = 19/42 (45%), Positives = 22/42 (52%), Gaps = 2/42 (4%)
Query: 2 AGPDTGTQWWCHTQTTG--GTHGFDSHNAQTRLQSSRDVGRG 41
AGPD+ TQ CH TTG GT G Q Q++ GRG
Sbjct: 17 AGPDSWTQAQCHVHTTGRHGTRGQMDVTPQCTGQATELEGRG 58
>gi|4885237 forkhead box C2 [Homo sapiens]
Length = 501
Score = 30.0 bits (66), Expect = 0.95
Identities = 14/31 (45%), Positives = 17/31 (54%)
Query: 133 PYGGHQQAGAQQLALAWSPLPLPFPAPPPAS 163
P GG GA + L PL LP+ A PPA+
Sbjct: 282 PPGGELSPGAGRAGLVVPPLALPYAAAPPAA 312
>gi|119395716 forkhead box C1 [Homo sapiens]
Length = 553
Score = 30.0 bits (66), Expect = 0.95
Identities = 22/65 (33%), Positives = 28/65 (43%), Gaps = 1/65 (1%)
Query: 51 ETKVAGHSGGAWGGPLAA-SLGLVRLPHFVEQLHHFIIDDKHYGHIQADPAQAGDSALVE 109
+T AG SGG GG AA G H Q + GH+Q P AG SA+ +
Sbjct: 367 QTSSAGSSGGGGGGAGAAGGAGGAGTYHCNLQAMSLYAAGERGGHLQGAPGGAGGSAVDD 426
Query: 110 SGPSF 114
P +
Sbjct: 427 PLPDY 431
>gi|148539855 epidermal growth factor receptor pathway substrate
8-like protein 1 isoform b [Homo sapiens]
Length = 596
Score = 30.0 bits (66), Expect = 0.95
Identities = 16/34 (47%), Positives = 18/34 (52%), Gaps = 4/34 (11%)
Query: 133 PYGG----HQQAGAQQLALAWSPLPLPFPAPPPA 162
PY G H Q+ A+ L P P P PAPPPA
Sbjct: 407 PYPGPRLHHSQSPARSLNSTPPPPPAPAPAPPPA 440
>gi|148539853 epidermal growth factor receptor pathway substrate
8-like protein 1 isoform a [Homo sapiens]
Length = 723
Score = 30.0 bits (66), Expect = 0.95
Identities = 16/34 (47%), Positives = 18/34 (52%), Gaps = 4/34 (11%)
Query: 133 PYGG----HQQAGAQQLALAWSPLPLPFPAPPPA 162
PY G H Q+ A+ L P P P PAPPPA
Sbjct: 534 PYPGPRLHHSQSPARSLNSTPPPPPAPAPAPPPA 567
>gi|148596988 mucoepidermoid carcinoma translocated 1 isoform 3
[Homo sapiens]
Length = 650
Score = 29.3 bits (64), Expect = 1.6
Identities = 16/31 (51%), Positives = 17/31 (54%), Gaps = 4/31 (12%)
Query: 133 PYGGHQQAGAQQLALAWSPLPLPFPAPPPAS 163
PY QAG+QQ P P P P PPPAS
Sbjct: 367 PYAFFTQAGSQQPP----PQPQPPPPPPPAS 393
>gi|148596965 mucoepidermoid carcinoma translocated 1 isoform 1
[Homo sapiens]
Length = 634
Score = 29.3 bits (64), Expect = 1.6
Identities = 16/31 (51%), Positives = 17/31 (54%), Gaps = 4/31 (12%)
Query: 133 PYGGHQQAGAQQLALAWSPLPLPFPAPPPAS 163
PY QAG+QQ P P P P PPPAS
Sbjct: 351 PYAFFTQAGSQQPP----PQPQPPPPPPPAS 377
>gi|239756839 PREDICTED: hypothetical protein [Homo sapiens]
Length = 743
Score = 29.3 bits (64), Expect = 1.6
Identities = 13/27 (48%), Positives = 18/27 (66%)
Query: 139 QAGAQQLALAWSPLPLPFPAPPPASGS 165
+A A QL + P+P+P P PP ASG+
Sbjct: 257 RAEAHQLLPSLRPVPVPGPRPPQASGT 283
>gi|239751352 PREDICTED: hypothetical protein XP_002347815 [Homo
sapiens]
Length = 697
Score = 29.3 bits (64), Expect = 1.6
Identities = 13/27 (48%), Positives = 18/27 (66%)
Query: 139 QAGAQQLALAWSPLPLPFPAPPPASGS 165
+A A QL + P+P+P P PP ASG+
Sbjct: 257 RAEAHQLLPSLRPVPVPGPRPPQASGT 283
>gi|239745851 PREDICTED: hypothetical protein XP_002343605 [Homo
sapiens]
Length = 500
Score = 29.3 bits (64), Expect = 1.6
Identities = 13/27 (48%), Positives = 18/27 (66%)
Query: 139 QAGAQQLALAWSPLPLPFPAPPPASGS 165
+A A QL + P+P+P P PP ASG+
Sbjct: 257 RAEAHQLLPSLRPVPVPGPRPPQASGT 283
>gi|239740933 PREDICTED: hypothetical protein XP_002344111 [Homo
sapiens]
Length = 697
Score = 29.3 bits (64), Expect = 1.6
Identities = 13/27 (48%), Positives = 18/27 (66%)
Query: 139 QAGAQQLALAWSPLPLPFPAPPPASGS 165
+A A QL + P+P+P P PP ASG+
Sbjct: 257 RAEAHQLLPSLRPVPVPGPRPPQASGT 283
>gi|28872796 CCAAT/enhancer binding protein beta [Homo sapiens]
Length = 345
Score = 28.9 bits (63), Expect = 2.1
Identities = 11/19 (57%), Positives = 12/19 (63%)
Query: 144 QLALAWSPLPLPFPAPPPA 162
Q +AW P LP P PPPA
Sbjct: 2 QRLVAWDPACLPLPPPPPA 20
>gi|47078278 choline kinase alpha isoform b [Homo sapiens]
Length = 439
Score = 28.5 bits (62), Expect = 2.8
Identities = 15/29 (51%), Positives = 16/29 (55%), Gaps = 5/29 (17%)
Query: 138 QQAGAQQLALAWSP-----LPLPFPAPPP 161
+Q G QQ LA P LPLP P PPP
Sbjct: 46 KQLGGQQPPLALPPPPPLPLPLPLPQPPP 74
>gi|47078276 choline kinase alpha isoform a [Homo sapiens]
Length = 457
Score = 28.5 bits (62), Expect = 2.8
Identities = 15/29 (51%), Positives = 16/29 (55%), Gaps = 5/29 (17%)
Query: 138 QQAGAQQLALAWSP-----LPLPFPAPPP 161
+Q G QQ LA P LPLP P PPP
Sbjct: 46 KQLGGQQPPLALPPPPPLPLPLPLPQPPP 74
>gi|102469037 jun D proto-oncogene [Homo sapiens]
Length = 347
Score = 28.5 bits (62), Expect = 2.8
Identities = 17/45 (37%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
Query: 120 PQSHVFRYLCASRPYGGHQQAGAQQLALAWSPLPLPFPAPPPASG 164
P++ V+ L +S G GA +A A P+P P P PP A G
Sbjct: 189 PEAPVYANL-SSYAGGAGGAGGAATVAFAAEPVPFPPPPPPGALG 232
>gi|188497618 connector enhancer of kinase suppressor of Ras 1 [Homo
sapiens]
Length = 713
Score = 28.5 bits (62), Expect = 2.8
Identities = 16/43 (37%), Positives = 19/43 (44%), Gaps = 2/43 (4%)
Query: 120 PQSHVFRYLCASRPYGGHQQAGAQQLALAWSPLPLPFPAPPPA 162
P VF + +S P G A +L P PLP P PPA
Sbjct: 311 PSEDVFAFDLSSNPSPGPSPAWTDSASLG--PEPLPIPPEPPA 351
>gi|148229134 ring finger and KH domain containing 2 [Homo sapiens]
Length = 659
Score = 28.5 bits (62), Expect = 2.8
Identities = 12/17 (70%), Positives = 13/17 (76%)
Query: 145 LALAWSPLPLPFPAPPP 161
LALA +P PLP P PPP
Sbjct: 9 LALAAAPAPLPQPPPPP 25
>gi|222136692 melanocyte-specific gene 1 isoform 1 [Homo sapiens]
Length = 193
Score = 28.1 bits (61), Expect = 3.6
Identities = 19/85 (22%), Positives = 38/85 (44%), Gaps = 14/85 (16%)
Query: 40 RGLLALLHW----NRETKVAGHSGGAWGGPLAA----------SLGLVRLPHFVEQLHHF 85
R +A+LH+ + TK +G + G P+ + S L PH + +H
Sbjct: 39 RKAVAILHYPGVASNGTKASGAPTSSSGSPIGSPTTTPPTKPPSFNLHPAPHLLASMHLQ 98
Query: 86 IIDDKHYGHIQADPAQAGDSALVES 110
++ ++ G A P Q G++ +++
Sbjct: 99 KLNSQYQGMAAATPGQPGEAGPLQN 123
>gi|222136690 melanocyte-specific gene 1 isoform 1 [Homo sapiens]
Length = 193
Score = 28.1 bits (61), Expect = 3.6
Identities = 19/85 (22%), Positives = 38/85 (44%), Gaps = 14/85 (16%)
Query: 40 RGLLALLHW----NRETKVAGHSGGAWGGPLAA----------SLGLVRLPHFVEQLHHF 85
R +A+LH+ + TK +G + G P+ + S L PH + +H
Sbjct: 39 RKAVAILHYPGVASNGTKASGAPTSSSGSPIGSPTTTPPTKPPSFNLHPAPHLLASMHLQ 98
Query: 86 IIDDKHYGHIQADPAQAGDSALVES 110
++ ++ G A P Q G++ +++
Sbjct: 99 KLNSQYQGMAAATPGQPGEAGPLQN 123
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.320 0.136 0.457
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,239,858
Number of Sequences: 37866
Number of extensions: 395780
Number of successful extensions: 2179
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 32
Number of HSP's successfully gapped in prelim test: 19
Number of HSP's that attempted gapping in prelim test: 2108
Number of HSP's gapped (non-prelim): 74
length of query: 165
length of database: 18,247,518
effective HSP length: 94
effective length of query: 71
effective length of database: 14,688,114
effective search space: 1042856094
effective search space used: 1042856094
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 58 (26.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.