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Search of human proteins with 239746469
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239746469 PREDICTED: hypothetical protein XP_002343770 [Homo
sapiens]
(104 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239757476 PREDICTED: hypothetical protein [Homo sapiens] 214 9e-57
gi|239751982 PREDICTED: hypothetical protein XP_002348093 [Homo ... 214 9e-57
gi|239746469 PREDICTED: hypothetical protein XP_002343770 [Homo ... 214 9e-57
gi|239753314 PREDICTED: similar to RIKEN cDNA C230030N03 [Homo s... 30 0.31
gi|55770852 glutamate receptor, ionotropic, delta 1 precursor [H... 28 1.2
gi|41352718 deltex homolog 1 [Homo sapiens] 28 1.2
gi|239757751 PREDICTED: hypothetical protein [Homo sapiens] 28 1.5
gi|239756041 PREDICTED: hypothetical protein XP_002344790 [Homo ... 28 2.0
gi|239752261 PREDICTED: hypothetical protein XP_002348184 [Homo ... 28 2.0
gi|239746774 PREDICTED: hypothetical protein XP_002343845 [Homo ... 28 2.0
gi|239752764 PREDICTED: hypothetical protein [Homo sapiens] 27 3.4
gi|239747300 PREDICTED: hypothetical protein XP_002346414 [Homo ... 27 3.4
gi|239741124 PREDICTED: hypothetical protein XP_002342114 [Homo ... 27 3.4
gi|145309320 forkhead box Q1 [Homo sapiens] 26 5.9
gi|115430235 ubiquitin-like with PHD and ring finger domains 1 i... 26 5.9
gi|115430233 ubiquitin-like with PHD and ring finger domains 1 i... 26 5.9
gi|20162568 melanoma antigen family C, 3 isoform 1 [Homo sapiens] 26 5.9
gi|21359935 Down syndrome cell adhesion molecule like 1 [Homo sa... 26 5.9
gi|41152072 zinc finger, DHHC domain containing 5 [Homo sapiens] 26 5.9
gi|162329583 cleavage and polyadenylation specific factor 6, 68 ... 26 7.7
gi|61744471 low density lipoprotein receptor-related protein 8 i... 26 7.7
gi|61744467 low density lipoprotein receptor-related protein 8 i... 26 7.7
gi|66082554 low density lipoprotein receptor-related protein 8 i... 26 7.7
gi|65301119 low density lipoprotein receptor-related protein 8 i... 26 7.7
gi|34098976 marapsin 2 [Homo sapiens] 26 7.7
>gi|239757476 PREDICTED: hypothetical protein [Homo sapiens]
Length = 104
Score = 214 bits (546), Expect = 9e-57
Identities = 104/104 (100%), Positives = 104/104 (100%)
Query: 1 MATLCSDRQRTTSPAPLAVLPAFSAQLGPAAAVAVLPLATFMILGDWLKQNGQSEKNEVE 60
MATLCSDRQRTTSPAPLAVLPAFSAQLGPAAAVAVLPLATFMILGDWLKQNGQSEKNEVE
Sbjct: 1 MATLCSDRQRTTSPAPLAVLPAFSAQLGPAAAVAVLPLATFMILGDWLKQNGQSEKNEVE 60
Query: 61 ARSRYGKWNRAAAALGPSSPGQRLWVQPRGERPCTPTLFGGAPA 104
ARSRYGKWNRAAAALGPSSPGQRLWVQPRGERPCTPTLFGGAPA
Sbjct: 61 ARSRYGKWNRAAAALGPSSPGQRLWVQPRGERPCTPTLFGGAPA 104
>gi|239751982 PREDICTED: hypothetical protein XP_002348093 [Homo
sapiens]
Length = 104
Score = 214 bits (546), Expect = 9e-57
Identities = 104/104 (100%), Positives = 104/104 (100%)
Query: 1 MATLCSDRQRTTSPAPLAVLPAFSAQLGPAAAVAVLPLATFMILGDWLKQNGQSEKNEVE 60
MATLCSDRQRTTSPAPLAVLPAFSAQLGPAAAVAVLPLATFMILGDWLKQNGQSEKNEVE
Sbjct: 1 MATLCSDRQRTTSPAPLAVLPAFSAQLGPAAAVAVLPLATFMILGDWLKQNGQSEKNEVE 60
Query: 61 ARSRYGKWNRAAAALGPSSPGQRLWVQPRGERPCTPTLFGGAPA 104
ARSRYGKWNRAAAALGPSSPGQRLWVQPRGERPCTPTLFGGAPA
Sbjct: 61 ARSRYGKWNRAAAALGPSSPGQRLWVQPRGERPCTPTLFGGAPA 104
>gi|239746469 PREDICTED: hypothetical protein XP_002343770 [Homo
sapiens]
Length = 104
Score = 214 bits (546), Expect = 9e-57
Identities = 104/104 (100%), Positives = 104/104 (100%)
Query: 1 MATLCSDRQRTTSPAPLAVLPAFSAQLGPAAAVAVLPLATFMILGDWLKQNGQSEKNEVE 60
MATLCSDRQRTTSPAPLAVLPAFSAQLGPAAAVAVLPLATFMILGDWLKQNGQSEKNEVE
Sbjct: 1 MATLCSDRQRTTSPAPLAVLPAFSAQLGPAAAVAVLPLATFMILGDWLKQNGQSEKNEVE 60
Query: 61 ARSRYGKWNRAAAALGPSSPGQRLWVQPRGERPCTPTLFGGAPA 104
ARSRYGKWNRAAAALGPSSPGQRLWVQPRGERPCTPTLFGGAPA
Sbjct: 61 ARSRYGKWNRAAAALGPSSPGQRLWVQPRGERPCTPTLFGGAPA 104
>gi|239753314 PREDICTED: similar to RIKEN cDNA C230030N03 [Homo
sapiens]
Length = 1183
Score = 30.4 bits (67), Expect = 0.31
Identities = 12/33 (36%), Positives = 17/33 (51%)
Query: 66 GKWNRAAAALGPSSPGQRLWVQPRGERPCTPTL 98
G + + LGP+ + LW QP + PC P L
Sbjct: 266 GTRTKKESTLGPAGDTELLWSQPHSDVPCQPPL 298
>gi|55770852 glutamate receptor, ionotropic, delta 1 precursor [Homo
sapiens]
Length = 1009
Score = 28.5 bits (62), Expect = 1.2
Identities = 17/51 (33%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
Query: 18 AVLPAFSAQLGPAAAVAVLPLATFMILGDWLKQNGQSEKNEVEARSRYGKW 68
AV +AQ P+A+ A L A +++ G +++Q G+S N + R G W
Sbjct: 588 AVRAQSAAQPRPSAS-ATLHSAIWIVYGAFVQQGGESSVNSMAMRIVMGSW 637
>gi|41352718 deltex homolog 1 [Homo sapiens]
Length = 620
Score = 28.5 bits (62), Expect = 1.2
Identities = 29/99 (29%), Positives = 36/99 (36%), Gaps = 30/99 (30%)
Query: 4 LCSDRQRTTSPAPLAVLPAFSAQLGPAAAVAVLPLATFMILGDWLKQNGQSEKNEVEARS 63
+ + ++R PAP LP GP A+AV P ATF W
Sbjct: 218 ILASQRRKAPPAP--PLPPPPPPGGPPGALAVRPSATFTGAALW---------------- 259
Query: 64 RYGKWNRAAAALGPSSPGQRLWVQPRGERPCTPTLFGGA 102
AA A GP+ P P G P +P GGA
Sbjct: 260 -------AAPAAGPAEP-----APPPGAPPRSPGAPGGA 286
>gi|239757751 PREDICTED: hypothetical protein [Homo sapiens]
Length = 327
Score = 28.1 bits (61), Expect = 1.5
Identities = 25/78 (32%), Positives = 32/78 (41%), Gaps = 26/78 (33%)
Query: 51 NGQSEKNEVEARSRYGK-------------WNRAAA-----------ALGPSSPGQRLWV 86
N + K E+ AR R+ W RA A ALGP + G +L V
Sbjct: 66 NTRCLKFEISARGRWAVFHHQPSTPKGRCVWRRAGAGIVRSGPGLHGALGPDTGGAKLRV 125
Query: 87 QPRGERPCTPTL--FGGA 102
+PR P P+L GGA
Sbjct: 126 RPRRTPPRDPSLPVLGGA 143
>gi|239756041 PREDICTED: hypothetical protein XP_002344790 [Homo
sapiens]
Length = 172
Score = 27.7 bits (60), Expect = 2.0
Identities = 28/77 (36%), Positives = 38/77 (49%), Gaps = 11/77 (14%)
Query: 14 PAPLAVLPAFSAQ-LGPAAAVAVLPLATFMILGDWLKQNGQSEKNEVEARSRYGKWNRAA 72
P+PL+VLP AQ + P VAV+ LG ++ G + EA R G+W R
Sbjct: 19 PSPLSVLPGVVAQPVRPLGVVAVM----VRELGPLRREGGPAVH---EALHRGGRW-RLL 70
Query: 73 AALGPSSPGQRLWVQPR 89
A GP Q+L+ Q R
Sbjct: 71 CARGPVL--QQLYPQHR 85
>gi|239752261 PREDICTED: hypothetical protein XP_002348184 [Homo
sapiens]
Length = 264
Score = 27.7 bits (60), Expect = 2.0
Identities = 19/48 (39%), Positives = 23/48 (47%), Gaps = 13/48 (27%)
Query: 68 WNRAAA-----------ALGPSSPGQRLWVQPRGERPCTPTL--FGGA 102
W RA A ALGP + G +L V+PR P P+L GGA
Sbjct: 33 WRRAGAGIVRSGPGLHGALGPDTGGAKLRVRPRRTPPRDPSLPVLGGA 80
>gi|239746774 PREDICTED: hypothetical protein XP_002343845 [Homo
sapiens]
Length = 264
Score = 27.7 bits (60), Expect = 2.0
Identities = 19/48 (39%), Positives = 23/48 (47%), Gaps = 13/48 (27%)
Query: 68 WNRAAA-----------ALGPSSPGQRLWVQPRGERPCTPTL--FGGA 102
W RA A ALGP + G +L V+PR P P+L GGA
Sbjct: 33 WRRAGAGIVRSGPGLHGALGPDTGGAKLRVRPRRTPPRDPSLPVLGGA 80
>gi|239752764 PREDICTED: hypothetical protein [Homo sapiens]
Length = 370
Score = 26.9 bits (58), Expect = 3.4
Identities = 17/42 (40%), Positives = 18/42 (42%), Gaps = 2/42 (4%)
Query: 62 RSRYGKWNRAAAALGPSSPGQRLWVQPRGERPCTPTLFGGAP 103
R R G AA G P +R QP G R P GGAP
Sbjct: 80 RGRGGLPGAAALGAGAQQPRRRRLAQPPGSR--APLQVGGAP 119
>gi|239747300 PREDICTED: hypothetical protein XP_002346414 [Homo
sapiens]
Length = 470
Score = 26.9 bits (58), Expect = 3.4
Identities = 17/42 (40%), Positives = 18/42 (42%), Gaps = 2/42 (4%)
Query: 62 RSRYGKWNRAAAALGPSSPGQRLWVQPRGERPCTPTLFGGAP 103
R R G AA G P +R QP G R P GGAP
Sbjct: 80 RGRGGLPGAAALGAGAQQPRRRRLAQPPGSR--APLQVGGAP 119
>gi|239741124 PREDICTED: hypothetical protein XP_002342114 [Homo
sapiens]
Length = 470
Score = 26.9 bits (58), Expect = 3.4
Identities = 17/42 (40%), Positives = 18/42 (42%), Gaps = 2/42 (4%)
Query: 62 RSRYGKWNRAAAALGPSSPGQRLWVQPRGERPCTPTLFGGAP 103
R R G AA G P +R QP G R P GGAP
Sbjct: 80 RGRGGLPGAAALGAGAQQPRRRRLAQPPGSR--APLQVGGAP 119
>gi|145309320 forkhead box Q1 [Homo sapiens]
Length = 403
Score = 26.2 bits (56), Expect = 5.9
Identities = 18/44 (40%), Positives = 21/44 (47%), Gaps = 8/44 (18%)
Query: 6 SDRQRTTSP--------APLAVLPAFSAQLGPAAAVAVLPLATF 41
S R R T+P AP LPAF A L A A+LPL +
Sbjct: 283 SRRLRDTAPGTTLQWGAAPCPPLPAFPALLPAAPCRALLPLCAY 326
>gi|115430235 ubiquitin-like with PHD and ring finger domains 1
isoform 1 [Homo sapiens]
Length = 793
Score = 26.2 bits (56), Expect = 5.9
Identities = 14/39 (35%), Positives = 20/39 (51%), Gaps = 6/39 (15%)
Query: 49 KQNGQSEKNEVEA------RSRYGKWNRAAAALGPSSPG 81
K+N + E+ E + R+ GKW R +A GPS G
Sbjct: 622 KENSKREEEEQQEGGFASPRTGKGKWKRKSAGGGPSRAG 660
>gi|115430233 ubiquitin-like with PHD and ring finger domains 1
isoform 2 [Homo sapiens]
Length = 806
Score = 26.2 bits (56), Expect = 5.9
Identities = 14/39 (35%), Positives = 20/39 (51%), Gaps = 6/39 (15%)
Query: 49 KQNGQSEKNEVEA------RSRYGKWNRAAAALGPSSPG 81
K+N + E+ E + R+ GKW R +A GPS G
Sbjct: 635 KENSKREEEEQQEGGFASPRTGKGKWKRKSAGGGPSRAG 673
>gi|20162568 melanoma antigen family C, 3 isoform 1 [Homo sapiens]
Length = 643
Score = 26.2 bits (56), Expect = 5.9
Identities = 16/49 (32%), Positives = 22/49 (44%), Gaps = 3/49 (6%)
Query: 54 SEKNEVEARSRYGKWNRAAA---ALGPSSPGQRLWVQPRGERPCTPTLF 99
+EK + S W R +L SPG+RLW + G P + LF
Sbjct: 132 NEKRTLWKDSDLPTWRRGTGYTLSLPAVSPGKRLWGEKAGSLPESEPLF 180
>gi|21359935 Down syndrome cell adhesion molecule like 1 [Homo
sapiens]
Length = 2113
Score = 26.2 bits (56), Expect = 5.9
Identities = 21/106 (19%), Positives = 36/106 (33%), Gaps = 32/106 (30%)
Query: 28 GPAAAVAVLPLATFMILGDWL---KQNGQSEKNEVEARS--------------------- 63
GP A + +P + ++ WL K NG K + S
Sbjct: 1252 GPPAGIKAVPSSASSVVVSWLPPTKPNGVIRKYTIFCSSPGSGQPAPSEYETSPEQLFYR 1311
Query: 64 --------RYGKWNRAAAALGPSSPGQRLWVQPRGERPCTPTLFGG 101
+Y W A + G + +++ ++P G+ P FGG
Sbjct: 1312 IAHLNRGQQYLLWVAAVTSAGRGNSSEKVTIEPAGKAPAKIISFGG 1357
>gi|41152072 zinc finger, DHHC domain containing 5 [Homo sapiens]
Length = 715
Score = 26.2 bits (56), Expect = 5.9
Identities = 11/26 (42%), Positives = 17/26 (65%)
Query: 56 KNEVEARSRYGKWNRAAAALGPSSPG 81
K+EV+ ++ Y K N +LG +SPG
Sbjct: 661 KDEVQLKTTYSKSNGQPKSLGSASPG 686
>gi|162329583 cleavage and polyadenylation specific factor 6, 68 kD
subunit [Homo sapiens]
Length = 551
Score = 25.8 bits (55), Expect = 7.7
Identities = 15/33 (45%), Positives = 16/33 (48%), Gaps = 5/33 (15%)
Query: 76 GPSSPGQRL-----WVQPRGERPCTPTLFGGAP 103
GP PGQ L RG+RP P LF G P
Sbjct: 251 GPPPPGQVLPPPLAGPPNRGDRPPPPVLFPGQP 283
>gi|61744471 low density lipoprotein receptor-related protein 8
isoform 1 precursor [Homo sapiens]
Length = 963
Score = 25.8 bits (55), Expect = 7.7
Identities = 17/47 (36%), Positives = 21/47 (44%), Gaps = 10/47 (21%)
Query: 1 MATLCSDRQRTTSPAPLAVLPAFSAQLGPAAAVAVLPLATFMILGDW 47
+AT+ R+RT FS L A+AV PL FM DW
Sbjct: 523 VATVDGGRRRTL----------FSRNLSEPRAIAVDPLRGFMYWSDW 559
>gi|61744467 low density lipoprotein receptor-related protein 8
isoform 3 precursor [Homo sapiens]
Length = 700
Score = 25.8 bits (55), Expect = 7.7
Identities = 17/47 (36%), Positives = 21/47 (44%), Gaps = 10/47 (21%)
Query: 1 MATLCSDRQRTTSPAPLAVLPAFSAQLGPAAAVAVLPLATFMILGDW 47
+AT+ R+RT FS L A+AV PL FM DW
Sbjct: 394 VATVDGGRRRTL----------FSRNLSEPRAIAVDPLRGFMYWSDW 430
>gi|66082554 low density lipoprotein receptor-related protein 8
isoform 2 precursor [Homo sapiens]
Length = 793
Score = 25.8 bits (55), Expect = 7.7
Identities = 17/47 (36%), Positives = 21/47 (44%), Gaps = 10/47 (21%)
Query: 1 MATLCSDRQRTTSPAPLAVLPAFSAQLGPAAAVAVLPLATFMILGDW 47
+AT+ R+RT FS L A+AV PL FM DW
Sbjct: 353 VATVDGGRRRTL----------FSRNLSEPRAIAVDPLRGFMYWSDW 389
>gi|65301119 low density lipoprotein receptor-related protein 8
isoform 4 precursor [Homo sapiens]
Length = 904
Score = 25.8 bits (55), Expect = 7.7
Identities = 17/47 (36%), Positives = 21/47 (44%), Gaps = 10/47 (21%)
Query: 1 MATLCSDRQRTTSPAPLAVLPAFSAQLGPAAAVAVLPLATFMILGDW 47
+AT+ R+RT FS L A+AV PL FM DW
Sbjct: 523 VATVDGGRRRTL----------FSRNLSEPRAIAVDPLRGFMYWSDW 559
>gi|34098976 marapsin 2 [Homo sapiens]
Length = 326
Score = 25.8 bits (55), Expect = 7.7
Identities = 15/41 (36%), Positives = 23/41 (56%), Gaps = 2/41 (4%)
Query: 4 LCSDRQRTTSPAPLAVLPAFSAQLGPAAAVAVLPLATFMIL 44
+C + + T +PA A PA S LGP +V + LA + +L
Sbjct: 288 ICDNIEITPTPAQPA--PALSPALGPTLSVLMAMLAGWSVL 326
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.317 0.130 0.410
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,790,862
Number of Sequences: 37866
Number of extensions: 202323
Number of successful extensions: 679
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 667
Number of HSP's gapped (non-prelim): 25
length of query: 104
length of database: 18,247,518
effective HSP length: 75
effective length of query: 29
effective length of database: 15,407,568
effective search space: 446819472
effective search space used: 446819472
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.