Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Search of human proteins with 239746423
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239746423 PREDICTED: hypothetical protein XP_002344208
isoform 1 [Homo sapiens]
(195 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239746423 PREDICTED: hypothetical protein XP_002344208 isofor... 417 e-117
gi|239757423 PREDICTED: hypothetical protein XP_002345427 isofor... 415 e-116
gi|239751940 PREDICTED: hypothetical protein XP_002348044 isofor... 415 e-116
gi|239757421 PREDICTED: hypothetical protein XP_002345428 isofor... 322 2e-88
gi|239751938 PREDICTED: hypothetical protein XP_002348045 isofor... 322 2e-88
gi|239746421 PREDICTED: hypothetical protein XP_002344209 isofor... 322 2e-88
gi|197927452 dynein, axonemal, heavy chain 1 [Homo sapiens] 32 0.26
gi|5031829 kallikrein 2, prostatic isoform 1 [Homo sapiens] 31 0.58
gi|50363237 kallikrein 2, prostatic isoform 2 [Homo sapiens] 31 0.58
gi|169174331 PREDICTED: hypothetical protein [Homo sapiens] 30 1.00
gi|169172659 PREDICTED: hypothetical protein [Homo sapiens] 30 1.00
gi|169172837 PREDICTED: hypothetical protein [Homo sapiens] 30 1.00
gi|105990535 coagulation factor V precursor [Homo sapiens] 30 1.7
gi|32455271 protein-O-mannosyltransferase 2 [Homo sapiens] 29 2.2
gi|61966731 transmembrane protein 82 [Homo sapiens] 29 2.2
gi|239742245 PREDICTED: hypothetical protein XP_002342464 [Homo ... 28 3.8
gi|153791171 family with sequence similarity 156, member B [Homo... 28 3.8
gi|31543441 family with sequence similarity 156, member A [Homo ... 28 3.8
gi|38788260 bromodomain PHD finger transcription factor isoform ... 28 4.9
gi|38788274 bromodomain PHD finger transcription factor isoform ... 28 4.9
gi|116256356 alpha 4 type IV collagen precursor [Homo sapiens] 28 4.9
gi|32698704 tectonin beta-propeller repeat containing 1 [Homo sa... 28 4.9
gi|211904140 DAZ associated protein 2 isoform c [Homo sapiens] 28 4.9
gi|9966903 mannosidase, alpha, class 1C, member 1 [Homo sapiens] 28 4.9
gi|23943900 transmembrane channel-like 8 [Homo sapiens] 28 4.9
gi|4557669 interleukin 4 receptor alpha chain isoform a precurso... 28 6.5
gi|157074214 potassium channel, subfamily U, member 1 [Homo sapi... 28 6.5
gi|75677365 dynein heavy chain domain 3 [Homo sapiens] 28 6.5
gi|239753797 PREDICTED: hypothetical protein [Homo sapiens] 27 8.4
gi|239748346 PREDICTED: hypothetical protein XP_002346641 [Homo ... 27 8.4
>gi|239746423 PREDICTED: hypothetical protein XP_002344208 isoform 1
[Homo sapiens]
Length = 195
Score = 417 bits (1071), Expect = e-117
Identities = 195/195 (100%), Positives = 195/195 (100%)
Query: 1 MRVGTWICLPGRPGRCRKQHDLGNCPEVPGIFKTLALSPGAPDMMQQPRVETDTIGAGEG 60
MRVGTWICLPGRPGRCRKQHDLGNCPEVPGIFKTLALSPGAPDMMQQPRVETDTIGAGEG
Sbjct: 1 MRVGTWICLPGRPGRCRKQHDLGNCPEVPGIFKTLALSPGAPDMMQQPRVETDTIGAGEG 60
Query: 61 PQQAVPWSAWVTRHGWVRWWVSHMPPSWIQWWSTSNWRQPLQRLLWGLEGILYLLLALML 120
PQQAVPWSAWVTRHGWVRWWVSHMPPSWIQWWSTSNWRQPLQRLLWGLEGILYLLLALML
Sbjct: 61 PQQAVPWSAWVTRHGWVRWWVSHMPPSWIQWWSTSNWRQPLQRLLWGLEGILYLLLALML 120
Query: 121 CHALFTTGSHLLSSLWPVVAAVWRHLLPALLLLVLSALPALLFTASFLLLFSTLLSLVGL 180
CHALFTTGSHLLSSLWPVVAAVWRHLLPALLLLVLSALPALLFTASFLLLFSTLLSLVGL
Sbjct: 121 CHALFTTGSHLLSSLWPVVAAVWRHLLPALLLLVLSALPALLFTASFLLLFSTLLSLVGL 180
Query: 181 LTSMTHPGDTQDLDQ 195
LTSMTHPGDTQDLDQ
Sbjct: 181 LTSMTHPGDTQDLDQ 195
>gi|239757423 PREDICTED: hypothetical protein XP_002345427 isoform 1
[Homo sapiens]
Length = 195
Score = 415 bits (1066), Expect = e-116
Identities = 194/195 (99%), Positives = 194/195 (99%)
Query: 1 MRVGTWICLPGRPGRCRKQHDLGNCPEVPGIFKTLALSPGAPDMMQQPRVETDTIGAGEG 60
MRVGTWICLPG PGRCRKQHDLGNCPEVPGIFKTLALSPGAPDMMQQPRVETDTIGAGEG
Sbjct: 1 MRVGTWICLPGHPGRCRKQHDLGNCPEVPGIFKTLALSPGAPDMMQQPRVETDTIGAGEG 60
Query: 61 PQQAVPWSAWVTRHGWVRWWVSHMPPSWIQWWSTSNWRQPLQRLLWGLEGILYLLLALML 120
PQQAVPWSAWVTRHGWVRWWVSHMPPSWIQWWSTSNWRQPLQRLLWGLEGILYLLLALML
Sbjct: 61 PQQAVPWSAWVTRHGWVRWWVSHMPPSWIQWWSTSNWRQPLQRLLWGLEGILYLLLALML 120
Query: 121 CHALFTTGSHLLSSLWPVVAAVWRHLLPALLLLVLSALPALLFTASFLLLFSTLLSLVGL 180
CHALFTTGSHLLSSLWPVVAAVWRHLLPALLLLVLSALPALLFTASFLLLFSTLLSLVGL
Sbjct: 121 CHALFTTGSHLLSSLWPVVAAVWRHLLPALLLLVLSALPALLFTASFLLLFSTLLSLVGL 180
Query: 181 LTSMTHPGDTQDLDQ 195
LTSMTHPGDTQDLDQ
Sbjct: 181 LTSMTHPGDTQDLDQ 195
>gi|239751940 PREDICTED: hypothetical protein XP_002348044 isoform 1
[Homo sapiens]
Length = 195
Score = 415 bits (1066), Expect = e-116
Identities = 194/195 (99%), Positives = 194/195 (99%)
Query: 1 MRVGTWICLPGRPGRCRKQHDLGNCPEVPGIFKTLALSPGAPDMMQQPRVETDTIGAGEG 60
MRVGTWICLPG PGRCRKQHDLGNCPEVPGIFKTLALSPGAPDMMQQPRVETDTIGAGEG
Sbjct: 1 MRVGTWICLPGHPGRCRKQHDLGNCPEVPGIFKTLALSPGAPDMMQQPRVETDTIGAGEG 60
Query: 61 PQQAVPWSAWVTRHGWVRWWVSHMPPSWIQWWSTSNWRQPLQRLLWGLEGILYLLLALML 120
PQQAVPWSAWVTRHGWVRWWVSHMPPSWIQWWSTSNWRQPLQRLLWGLEGILYLLLALML
Sbjct: 61 PQQAVPWSAWVTRHGWVRWWVSHMPPSWIQWWSTSNWRQPLQRLLWGLEGILYLLLALML 120
Query: 121 CHALFTTGSHLLSSLWPVVAAVWRHLLPALLLLVLSALPALLFTASFLLLFSTLLSLVGL 180
CHALFTTGSHLLSSLWPVVAAVWRHLLPALLLLVLSALPALLFTASFLLLFSTLLSLVGL
Sbjct: 121 CHALFTTGSHLLSSLWPVVAAVWRHLLPALLLLVLSALPALLFTASFLLLFSTLLSLVGL 180
Query: 181 LTSMTHPGDTQDLDQ 195
LTSMTHPGDTQDLDQ
Sbjct: 181 LTSMTHPGDTQDLDQ 195
>gi|239757421 PREDICTED: hypothetical protein XP_002345428 isoform 2
[Homo sapiens]
Length = 152
Score = 322 bits (824), Expect = 2e-88
Identities = 152/152 (100%), Positives = 152/152 (100%)
Query: 44 MMQQPRVETDTIGAGEGPQQAVPWSAWVTRHGWVRWWVSHMPPSWIQWWSTSNWRQPLQR 103
MMQQPRVETDTIGAGEGPQQAVPWSAWVTRHGWVRWWVSHMPPSWIQWWSTSNWRQPLQR
Sbjct: 1 MMQQPRVETDTIGAGEGPQQAVPWSAWVTRHGWVRWWVSHMPPSWIQWWSTSNWRQPLQR 60
Query: 104 LLWGLEGILYLLLALMLCHALFTTGSHLLSSLWPVVAAVWRHLLPALLLLVLSALPALLF 163
LLWGLEGILYLLLALMLCHALFTTGSHLLSSLWPVVAAVWRHLLPALLLLVLSALPALLF
Sbjct: 61 LLWGLEGILYLLLALMLCHALFTTGSHLLSSLWPVVAAVWRHLLPALLLLVLSALPALLF 120
Query: 164 TASFLLLFSTLLSLVGLLTSMTHPGDTQDLDQ 195
TASFLLLFSTLLSLVGLLTSMTHPGDTQDLDQ
Sbjct: 121 TASFLLLFSTLLSLVGLLTSMTHPGDTQDLDQ 152
>gi|239751938 PREDICTED: hypothetical protein XP_002348045 isoform 2
[Homo sapiens]
Length = 152
Score = 322 bits (824), Expect = 2e-88
Identities = 152/152 (100%), Positives = 152/152 (100%)
Query: 44 MMQQPRVETDTIGAGEGPQQAVPWSAWVTRHGWVRWWVSHMPPSWIQWWSTSNWRQPLQR 103
MMQQPRVETDTIGAGEGPQQAVPWSAWVTRHGWVRWWVSHMPPSWIQWWSTSNWRQPLQR
Sbjct: 1 MMQQPRVETDTIGAGEGPQQAVPWSAWVTRHGWVRWWVSHMPPSWIQWWSTSNWRQPLQR 60
Query: 104 LLWGLEGILYLLLALMLCHALFTTGSHLLSSLWPVVAAVWRHLLPALLLLVLSALPALLF 163
LLWGLEGILYLLLALMLCHALFTTGSHLLSSLWPVVAAVWRHLLPALLLLVLSALPALLF
Sbjct: 61 LLWGLEGILYLLLALMLCHALFTTGSHLLSSLWPVVAAVWRHLLPALLLLVLSALPALLF 120
Query: 164 TASFLLLFSTLLSLVGLLTSMTHPGDTQDLDQ 195
TASFLLLFSTLLSLVGLLTSMTHPGDTQDLDQ
Sbjct: 121 TASFLLLFSTLLSLVGLLTSMTHPGDTQDLDQ 152
>gi|239746421 PREDICTED: hypothetical protein XP_002344209 isoform 2
[Homo sapiens]
Length = 152
Score = 322 bits (824), Expect = 2e-88
Identities = 152/152 (100%), Positives = 152/152 (100%)
Query: 44 MMQQPRVETDTIGAGEGPQQAVPWSAWVTRHGWVRWWVSHMPPSWIQWWSTSNWRQPLQR 103
MMQQPRVETDTIGAGEGPQQAVPWSAWVTRHGWVRWWVSHMPPSWIQWWSTSNWRQPLQR
Sbjct: 1 MMQQPRVETDTIGAGEGPQQAVPWSAWVTRHGWVRWWVSHMPPSWIQWWSTSNWRQPLQR 60
Query: 104 LLWGLEGILYLLLALMLCHALFTTGSHLLSSLWPVVAAVWRHLLPALLLLVLSALPALLF 163
LLWGLEGILYLLLALMLCHALFTTGSHLLSSLWPVVAAVWRHLLPALLLLVLSALPALLF
Sbjct: 61 LLWGLEGILYLLLALMLCHALFTTGSHLLSSLWPVVAAVWRHLLPALLLLVLSALPALLF 120
Query: 164 TASFLLLFSTLLSLVGLLTSMTHPGDTQDLDQ 195
TASFLLLFSTLLSLVGLLTSMTHPGDTQDLDQ
Sbjct: 121 TASFLLLFSTLLSLVGLLTSMTHPGDTQDLDQ 152
>gi|197927452 dynein, axonemal, heavy chain 1 [Homo sapiens]
Length = 4265
Score = 32.3 bits (72), Expect = 0.26
Identities = 16/61 (26%), Positives = 28/61 (45%)
Query: 29 PGIFKTLALSPGAPDMMQQPRVETDTIGAGEGPQQAVPWSAWVTRHGWVRWWVSHMPPSW 88
PG L A +M ++ ++G G+GP+ + + R WV + H+ PSW
Sbjct: 3679 PGTDPAADLYKFAEEMKFSKKLSAISLGQGQGPRAEAMMRSSIERGKWVFFQNCHLAPSW 3738
Query: 89 I 89
+
Sbjct: 3739 M 3739
>gi|5031829 kallikrein 2, prostatic isoform 1 [Homo sapiens]
Length = 261
Score = 31.2 bits (69), Expect = 0.58
Identities = 15/56 (26%), Positives = 26/56 (46%), Gaps = 2/56 (3%)
Query: 34 TLALSPGAPDMMQQPRVETDTIGAGEGPQQAVPWSAWVTRHGWVRWWVSHMPPSWI 89
++ALS G + P +++ +G E + + PW V HGW + P W+
Sbjct: 7 SIALSVGCTGAV--PLIQSRIVGGWECEKHSQPWQVAVYSHGWAHCGGVLVHPQWV 60
>gi|50363237 kallikrein 2, prostatic isoform 2 [Homo sapiens]
Length = 223
Score = 31.2 bits (69), Expect = 0.58
Identities = 15/56 (26%), Positives = 26/56 (46%), Gaps = 2/56 (3%)
Query: 34 TLALSPGAPDMMQQPRVETDTIGAGEGPQQAVPWSAWVTRHGWVRWWVSHMPPSWI 89
++ALS G + P +++ +G E + + PW V HGW + P W+
Sbjct: 7 SIALSVGCTGAV--PLIQSRIVGGWECEKHSQPWQVAVYSHGWAHCGGVLVHPQWV 60
>gi|169174331 PREDICTED: hypothetical protein [Homo sapiens]
Length = 150
Score = 30.4 bits (67), Expect = 1.00
Identities = 18/55 (32%), Positives = 23/55 (41%), Gaps = 10/55 (18%)
Query: 4 GTWICLPGRPGRCRKQHDLGNCPEVPGIFKTLALSPGAPDMMQQPRVETDTIGAG 58
G W+ P RPG+ H G C +V GAP + R+ DT G G
Sbjct: 10 GQWVARPLRPGKPAPAHSRGGCIQV----------AGAPFLENGGRLAGDTQGNG 54
>gi|169172659 PREDICTED: hypothetical protein [Homo sapiens]
Length = 150
Score = 30.4 bits (67), Expect = 1.00
Identities = 18/55 (32%), Positives = 23/55 (41%), Gaps = 10/55 (18%)
Query: 4 GTWICLPGRPGRCRKQHDLGNCPEVPGIFKTLALSPGAPDMMQQPRVETDTIGAG 58
G W+ P RPG+ H G C +V GAP + R+ DT G G
Sbjct: 10 GQWVARPLRPGKPAPAHSRGGCIQV----------AGAPFLENGGRLAGDTQGNG 54
>gi|169172837 PREDICTED: hypothetical protein [Homo sapiens]
Length = 150
Score = 30.4 bits (67), Expect = 1.00
Identities = 18/55 (32%), Positives = 23/55 (41%), Gaps = 10/55 (18%)
Query: 4 GTWICLPGRPGRCRKQHDLGNCPEVPGIFKTLALSPGAPDMMQQPRVETDTIGAG 58
G W+ P RPG+ H G C +V GAP + R+ DT G G
Sbjct: 10 GQWVARPLRPGKPAPAHSRGGCIQV----------AGAPFLENGGRLAGDTQGNG 54
>gi|105990535 coagulation factor V precursor [Homo sapiens]
Length = 2224
Score = 29.6 bits (65), Expect = 1.7
Identities = 13/25 (52%), Positives = 15/25 (60%)
Query: 18 KQHDLGNCPEVPGIFKTLALSPGAP 42
KQH LG P +PG FKTL + P
Sbjct: 1855 KQHQLGVWPLLPGSFKTLEMKASKP 1879
>gi|32455271 protein-O-mannosyltransferase 2 [Homo sapiens]
Length = 750
Score = 29.3 bits (64), Expect = 2.2
Identities = 29/101 (28%), Positives = 44/101 (43%), Gaps = 15/101 (14%)
Query: 91 WWSTSNWRQPLQRLLWGLEGILYLLLALMLCHALFTTGS--HLLSSLWPVVAAVWRHLLP 148
WW W L G G+ ++ L ++L L T +L L + V +HL
Sbjct: 225 WWF---WLSLTGVSLAGALGVKFVGLFIILQVGLNTIADLWYLFGDLSLSLVTVGKHLTA 281
Query: 149 ALLLLVLSALPALLFTASFLLLFSTLLSLVGLLTSMTHPGD 189
+L L++ LP L+TA+F + F L S + PGD
Sbjct: 282 RVLCLIV--LPLALYTATFAVHFMVL--------SKSGPGD 312
>gi|61966731 transmembrane protein 82 [Homo sapiens]
Length = 343
Score = 29.3 bits (64), Expect = 2.2
Identities = 31/103 (30%), Positives = 40/103 (38%), Gaps = 11/103 (10%)
Query: 86 PSWIQWWSTSNWRQPL-QRLLWGLEGILYLLLALMLCHALFTTG----------SHLLSS 134
PSW+ + W L LL GL G L +L+ L F G L +
Sbjct: 8 PSWLPGLPSLEWGSSLLDSLLQGLIGALGVLVLNSLLKVYFFVGCANDPQRRPEKERLRA 67
Query: 135 LWPVVAAVWRHLLPALLLLVLSALPALLFTASFLLLFSTLLSL 177
W + V L L +V S + AL+ L STLLSL
Sbjct: 68 QWASLETVHLAGLALFLTVVGSRVAALVVLEFSLRAVSTLLSL 110
>gi|239742245 PREDICTED: hypothetical protein XP_002342464 [Homo
sapiens]
Length = 424
Score = 28.5 bits (62), Expect = 3.8
Identities = 16/49 (32%), Positives = 26/49 (53%), Gaps = 4/49 (8%)
Query: 9 LPGRPGRCRKQHDLGNCPEVPGIFKTLALSPGAPDMMQQPRVETDTIGA 57
L +P R Q G P P TL+ S G+P ++++P + TD++ A
Sbjct: 127 LTSQPERSSSQRARGKTPSSP----TLSPSRGSPLLLREPSLVTDSLEA 171
>gi|153791171 family with sequence similarity 156, member B [Homo
sapiens]
Length = 213
Score = 28.5 bits (62), Expect = 3.8
Identities = 11/29 (37%), Positives = 15/29 (51%)
Query: 38 SPGAPDMMQQPRVETDTIGAGEGPQQAVP 66
+P P +QP + + G GP QAVP
Sbjct: 29 APSQPSYSEQPMMGLSNLSPGPGPSQAVP 57
>gi|31543441 family with sequence similarity 156, member A [Homo
sapiens]
Length = 213
Score = 28.5 bits (62), Expect = 3.8
Identities = 11/29 (37%), Positives = 15/29 (51%)
Query: 38 SPGAPDMMQQPRVETDTIGAGEGPQQAVP 66
+P P +QP + + G GP QAVP
Sbjct: 29 APSQPSYSEQPMMGLSNLSPGPGPSQAVP 57
>gi|38788260 bromodomain PHD finger transcription factor isoform 2
[Homo sapiens]
Length = 2903
Score = 28.1 bits (61), Expect = 4.9
Identities = 13/37 (35%), Positives = 19/37 (51%)
Query: 33 KTLALSPGAPDMMQQPRVETDTIGAGEGPQQAVPWSA 69
+T SP P++ QP V+T T + P +A P A
Sbjct: 2408 QTQPQSPAQPEVQTQPEVQTQTTVSSHVPSEAQPTHA 2444
>gi|38788274 bromodomain PHD finger transcription factor isoform 1
[Homo sapiens]
Length = 2920
Score = 28.1 bits (61), Expect = 4.9
Identities = 13/37 (35%), Positives = 19/37 (51%)
Query: 33 KTLALSPGAPDMMQQPRVETDTIGAGEGPQQAVPWSA 69
+T SP P++ QP V+T T + P +A P A
Sbjct: 2282 QTQPQSPAQPEVQTQPEVQTQTTVSSHVPSEAQPTHA 2318
>gi|116256356 alpha 4 type IV collagen precursor [Homo sapiens]
Length = 1690
Score = 28.1 bits (61), Expect = 4.9
Identities = 14/36 (38%), Positives = 18/36 (50%), Gaps = 7/36 (19%)
Query: 9 LPGRPGRCRKQHDLGNCPEVPGIFKTLALSPGAPDM 44
LPG G D+ +CP +PG+ PGAP M
Sbjct: 1359 LPGPRGEPGPPADVDDCPRIPGL-------PGAPGM 1387
>gi|32698704 tectonin beta-propeller repeat containing 1 [Homo
sapiens]
Length = 1165
Score = 28.1 bits (61), Expect = 4.9
Identities = 11/28 (39%), Positives = 16/28 (57%), Gaps = 1/28 (3%)
Query: 62 QQAVPWSAWVTRHGWVRWWVSHMPPSWI 89
+QAV S WV + G ++WW P W+
Sbjct: 601 EQAVEQSVWV-KTGALQWWCDWKPHKWV 627
>gi|211904140 DAZ associated protein 2 isoform c [Homo sapiens]
Length = 207
Score = 28.1 bits (61), Expect = 4.9
Identities = 7/11 (63%), Positives = 9/11 (81%)
Query: 74 HGWVRWWVSHM 84
HGW RWW+ H+
Sbjct: 132 HGWFRWWLHHL 142
>gi|9966903 mannosidase, alpha, class 1C, member 1 [Homo sapiens]
Length = 630
Score = 28.1 bits (61), Expect = 4.9
Identities = 22/53 (41%), Positives = 25/53 (47%), Gaps = 2/53 (3%)
Query: 138 VVAAVWRHLLPA--LLLLVLSALPALLFTASFLLLFSTLLSLVGLLTSMTHPG 188
V A+ W LP L LL LS L L F A FLL S+ L + L PG
Sbjct: 10 VPASPWGLRLPQKFLFLLFLSGLVTLCFGALFLLPHSSRLKRLFLAPRTQQPG 62
>gi|23943900 transmembrane channel-like 8 [Homo sapiens]
Length = 726
Score = 28.1 bits (61), Expect = 4.9
Identities = 38/142 (26%), Positives = 54/142 (38%), Gaps = 29/142 (20%)
Query: 38 SPGAPDMMQQPRVETDTIGAGEGPQQAVPWSAWVTRHGW-VRWWVSHMPPSWIQWWSTSN 96
+PG P+ + E + + P + +P++ R W +R W +W
Sbjct: 12 APGVPEPEELWEAEMERLRGSGTPVRGLPYAMMDKRLIWQLREPAGVQTLRWQRWQRRRQ 71
Query: 97 W-----RQPLQRLLWGL---EGILYLLLALMLCHALFTTGSHLLSSLWPVVAAVWRHLLP 148
R+ QRL GL EG LY + LF TG R
Sbjct: 72 TVERRLREAAQRLARGLGLWEGALYEI------GGLFGTGI--------------RSYFT 111
Query: 149 ALLLLVLSALPALLFTASFLLL 170
L L+L L +LL TASF+LL
Sbjct: 112 FLRFLLLLNLLSLLLTASFVLL 133
>gi|4557669 interleukin 4 receptor alpha chain isoform a precursor
[Homo sapiens]
Length = 825
Score = 27.7 bits (60), Expect = 6.5
Identities = 17/56 (30%), Positives = 28/56 (50%), Gaps = 6/56 (10%)
Query: 77 VRWWVSHMPPSWIQWWSTSNW----RQPL-QRLLWGLEGILYLLLAL-MLCHALFT 126
VR W +W +W ++ W R+P Q LL G+ ++LA+ +LC+ T
Sbjct: 201 VRAWAQCYNTTWSEWSPSTKWHNSYREPFEQHLLLGVSVSCIVILAVCLLCYVSIT 256
>gi|157074214 potassium channel, subfamily U, member 1 [Homo
sapiens]
Length = 1149
Score = 27.7 bits (60), Expect = 6.5
Identities = 29/106 (27%), Positives = 46/106 (43%), Gaps = 3/106 (2%)
Query: 84 MPPSWIQWWSTSNWRQPLQRLLWGLEGILYLLLALMLCHALFTTGSHLLSSLWPVVAAVW 143
+PP++I ++ SNW R L L +L L L + A+ T+ S S L ++ + W
Sbjct: 179 IPPTFISYYLKSNWLG--LRFLRALR-LLELPQILQILRAIKTSNSVKFSKLLSIILSTW 235
Query: 144 RHLLPALLLLVLSALPALLFTASFLLLFSTLLSLVGLLTSMTHPGD 189
+ L+ S P L S + + + LV TS GD
Sbjct: 236 FTAAGFIHLVENSGDPWLKGRNSQNISYFESIYLVMATTSTVGFGD 281
>gi|75677365 dynein heavy chain domain 3 [Homo sapiens]
Length = 4427
Score = 27.7 bits (60), Expect = 6.5
Identities = 19/61 (31%), Positives = 26/61 (42%)
Query: 29 PGIFKTLALSPGAPDMMQQPRVETDTIGAGEGPQQAVPWSAWVTRHGWVRWWVSHMPPSW 88
PG+ T AL A M R ++G G+ P A VT+ WV H+ SW
Sbjct: 3843 PGVDPTSALLQLAEHMGMAQRFHALSLGQGQAPIAARLLREGVTQGHWVFLANCHLSLSW 3902
Query: 89 I 89
+
Sbjct: 3903 M 3903
>gi|239753797 PREDICTED: hypothetical protein [Homo sapiens]
Length = 864
Score = 27.3 bits (59), Expect = 8.4
Identities = 15/44 (34%), Positives = 24/44 (54%), Gaps = 4/44 (9%)
Query: 14 GRCRKQHDLGNCPEVPGIFKTLALSPGAPDMMQQPRVETDTIGA 57
GR Q G P P TL+ S G+P ++++P + TD++ A
Sbjct: 521 GRSSSQRARGKTPSSP----TLSPSRGSPLLLREPSLVTDSLEA 560
>gi|239748346 PREDICTED: hypothetical protein XP_002346641 [Homo
sapiens]
Length = 894
Score = 27.3 bits (59), Expect = 8.4
Identities = 15/44 (34%), Positives = 24/44 (54%), Gaps = 4/44 (9%)
Query: 14 GRCRKQHDLGNCPEVPGIFKTLALSPGAPDMMQQPRVETDTIGA 57
GR Q G P P TL+ S G+P ++++P + TD++ A
Sbjct: 521 GRSSSQRARGKTPSSP----TLSPSRGSPLLLREPSLVTDSLEA 560
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.325 0.139 0.490
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,031,460
Number of Sequences: 37866
Number of extensions: 417934
Number of successful extensions: 1460
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 1437
Number of HSP's gapped (non-prelim): 38
length of query: 195
length of database: 18,247,518
effective HSP length: 97
effective length of query: 98
effective length of database: 14,574,516
effective search space: 1428302568
effective search space used: 1428302568
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 59 (27.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.