Guide to the Human Genome
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Name: LOC100291033 Sequence: fasta or formatted (195aa) NCBI GI: 239751940
Description:

PREDICTED: hypothetical protein XP_002348044 isoform 1

Not currently referenced in the text

Other entries for this name:
alt prot {152aa} PREDICTED: hypothetical protein XP_002348045 isoform 2
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.7         13           2
 C cysteine            2.1          4           1
 D aspartate           3.1          6           1
 E glutamate           2.1          4           1
 F phenylalanine       2.6          5           1
 G glycine             7.7         15           1
 H histidine           4.1          8           1
 I isoleucine          2.6          5           1
 K lysine              1.0          2           1
 L leucine            19.0         37           4
 M methionine          3.1          6           2
 N asparagine          1.0          2           1
 P proline             8.2         16           2
 Q glutamine           5.1         10           2
 R arginine            4.6          9           1
 S serine              7.2         14           2
 T threonine           6.7         13           2
 V valine              6.2         12           2
 W tryptophan          6.7         13           2
 Y tyrosine            0.5          1           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002348044 isofor... 
LOC100291571          1.000   PREDICTED: hypothetical protein XP_002345427 isofor...
LOC100288797          0.992   PREDICTED: hypothetical protein XP_002344208 isofor...
LOC100291571          0.756   PREDICTED: hypothetical protein XP_002345428 isofor...
LOC100291033          0.756   PREDICTED: hypothetical protein XP_002348045 isofor...
LOC100288797          0.756   PREDICTED: hypothetical protein XP_002344209 isofor...
DNAH1                 0.018   dynein, axonemal, heavy chain 1 
KLK2                  0.015   kallikrein 2, prostatic isoform 1 
KLK2                  0.015   kallikrein 2, prostatic isoform 2 
F5                    0.013   coagulation factor V precursor 
ZBTB22                0.013   zinc finger and BTB domain containing 22 
ZBTB22                0.013   zinc finger and BTB domain containing 22 
POMT2                 0.010   protein-O-mannosyltransferase 2 
TMEM82                0.010   transmembrane protein 82 
LOC100129596          0.008   PREDICTED: hypothetical protein 
LOC100129596          0.008   PREDICTED: hypothetical protein 
LOC100129596          0.008   PREDICTED: hypothetical protein 
FAM156B               0.008   family with sequence similarity 156, member B [Homo...
FAM156A               0.008   family with sequence similarity 156, member A 
LOC100289589          0.008   PREDICTED: hypothetical protein XP_002342464 
BPTF                  0.008   bromodomain PHD finger transcription factor isoform ...
BPTF                  0.008   bromodomain PHD finger transcription factor isoform ...
COL4A4                0.008   alpha 4 type IV collagen precursor 
TECPR1                0.008   tectonin beta-propeller repeat containing 1 
DAZAP2                0.008   DAZ associated protein 2 isoform c 
MAN1C1                0.008   mannosidase, alpha, class 1C, member 1 
TMC8                  0.008   transmembrane channel-like 8 
IL4R                  0.008   interleukin 4 receptor alpha chain isoform a precurso...
KCNU1                 0.008   potassium channel, subfamily U, member 1 
DNAH2                 0.008   dynein heavy chain domain 3 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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