Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: TMEM82 Sequence: fasta or formatted (343aa) NCBI GI: 61966731
Description:

transmembrane protein 82

Referenced in:

Protein Composition and Structure

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.6         26           2
 C cysteine            2.9         10           1
 D aspartate           2.0          7           1
 E glutamate           3.5         12           2
 F phenylalanine       3.2         11           2
 G glycine             8.7         30           2
 H histidine           2.3          8           1
 I isoleucine          2.0          7           1
 K lysine              0.9          3           1
 L leucine            22.7         78           3
 M methionine          1.2          4           1
 N asparagine          1.2          4           1
 P proline             5.2         18           2
 Q glutamine           6.4         22           1
 R arginine            5.8         20           2
 S serine              8.7         30           2
 T threonine           4.4         15           2
 V valine              7.3         25           2
 W tryptophan          1.7          6           1
 Y tyrosine            2.0          7           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   transmembrane protein 82 
HDAC5                 0.011   histone deacetylase 5 isoform 3 
HDAC5                 0.011   histone deacetylase 5 isoform 1 
NAT8B                 0.011   N-acetyltransferase 8B 
CARD6                 0.011   caspase recruitment domain family, member 6 
ATP13A2               0.009   ATPase type 13A2 isoform 3 
ATP13A2               0.009   ATPase type 13A2 isoform 2 
ATP13A2               0.009   ATPase type 13A2 isoform 1 
NAT8                  0.009   N-acetyltransferase 8 
PTCHD2                0.009   patched domain containing 2 
LOC100291571          0.006   PREDICTED: hypothetical protein XP_002345427 isofor...
LOC100291571          0.006   PREDICTED: hypothetical protein XP_002345428 isofor...
LOC100291033          0.006   PREDICTED: hypothetical protein XP_002348044 isofor...
LOC100291033          0.006   PREDICTED: hypothetical protein XP_002348045 isofor...
LOC100288797          0.006   PREDICTED: hypothetical protein XP_002344208 isofor...
LOC100288797          0.006   PREDICTED: hypothetical protein XP_002344209 isofor...
WNK2                  0.006   WNK lysine deficient protein kinase 2 
DRD3                  0.005   dopamine receptor D3 isoform e 
DRD3                  0.005   dopamine receptor D3 isoform a 
SOX10                 0.005   SRY (sex determining region Y)-box 10 
ACTL7B                0.005   actin-like 7B 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press