Guide to the Human Genome
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Name: LOC100288797 Sequence: fasta or formatted (152aa) NCBI GI: 239746421
Description:

PREDICTED: hypothetical protein XP_002344209 isoform 2

Not currently referenced in the text

Other entries for this name:
alt prot {195aa} PREDICTED: hypothetical protein XP_002344208 isoform 1
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.2         11           2
 C cysteine            0.7          1           1
 D aspartate           2.6          4           1
 E glutamate           2.0          3           1
 F phenylalanine       2.6          4           1
 G glycine             5.9          9           1
 H histidine           3.9          6           1
 I isoleucine          2.0          3           1
 K lysine              0.0          0           0
 L leucine            21.7         33           4
 M methionine          3.3          5           2
 N asparagine          0.7          1           1
 P proline             6.6         10           2
 Q glutamine           5.9          9           2
 R arginine            3.9          6           1
 S serine              8.6         13           2
 T threonine           7.2         11           2
 V valine              6.6         10           2
 W tryptophan          7.9         12           2
 Y tyrosine            0.7          1           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002344209 isofor... 
LOC100291571          1.000   PREDICTED: hypothetical protein XP_002345427 isofor...
LOC100291571          1.000   PREDICTED: hypothetical protein XP_002345428 isofor...
LOC100291033          1.000   PREDICTED: hypothetical protein XP_002348044 isofor...
LOC100291033          1.000   PREDICTED: hypothetical protein XP_002348045 isofor...
LOC100288797          1.000   PREDICTED: hypothetical protein XP_002344208 isofor...
KLK2                  0.017   kallikrein 2, prostatic isoform 1 
KLK2                  0.017   kallikrein 2, prostatic isoform 2 
POMT2                 0.013   protein-O-mannosyltransferase 2 
DNAH1                 0.013   dynein, axonemal, heavy chain 1 
TMEM82                0.013   transmembrane protein 82 
TECPR1                0.010   tectonin beta-propeller repeat containing 1 
DAZAP2                0.010   DAZ associated protein 2 isoform c 
MAN1C1                0.010   mannosidase, alpha, class 1C, member 1 
IL4R                  0.010   interleukin 4 receptor alpha chain isoform a precurso...
KCNU1                 0.010   potassium channel, subfamily U, member 1 
YIPF2                 0.007   Yip1 domain family, member 2 
SLC23A3               0.007   solute carrier family 23 (nucleobase transporters),...
SLC23A3               0.007   solute carrier family 23 (nucleobase transporters),...
SLC23A3               0.007   solute carrier family 23 (nucleobase transporters),...
LOC100294039          0.007   PREDICTED: hypothetical protein 
LOC100287476          0.007   PREDICTED: hypothetical protein XP_002342375 
SLC5A2                0.007   solute carrier family 5 (sodium/glucose cotransporter...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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