Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: LOC100290322 Sequence: fasta or formatted (265aa) NCBI GI: 239751905
Description:

PREDICTED: hypothetical protein XP_002348039

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             4.9         13           2
 C cysteine            1.9          5           1
 D aspartate           1.1          3           1
 E glutamate           2.6          7           1
 F phenylalanine       6.0         16           1
 G glycine             4.9         13           3
 H histidine           1.5          4           1
 I isoleucine          2.6          7           1
 K lysine              5.7         15           1
 L leucine             9.8         26           2
 M methionine          1.5          4           1
 N asparagine          3.4          9           1
 P proline             7.2         19           3
 Q glutamine           3.8         10           1
 R arginine            7.5         20           2
 S serine             13.6         36           2
 T threonine           9.4         25           2
 V valine              9.4         25           2
 W tryptophan          0.8          2           1
 Y tyrosine            2.3          6           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002348039 
LOC100288722          1.000   PREDICTED: hypothetical protein XP_002343742 
LOC100291582          0.874   PREDICTED: hypothetical protein XP_002345268 
LOC100294029          0.186   PREDICTED: hypothetical protein 
LOC100130710          0.138   PREDICTED: hypothetical protein 
LOC100130710          0.138   PREDICTED: hypothetical protein 
LOC100291846          0.136   PREDICTED: hypothetical protein XP_002345270 
LOC100129081          0.134   PREDICTED: hypothetical protein 
LOC100129081          0.134   PREDICTED: hypothetical protein 
LOC100129081          0.134   PREDICTED: hypothetical protein 
LOC100291794          0.130   PREDICTED: hypothetical protein XP_002345269 
LOC100130710          0.130   PREDICTED: hypothetical protein 
LOC100290152          0.130   PREDICTED: hypothetical protein XP_002348038 
LOC100288507          0.130   PREDICTED: hypothetical protein XP_002343741 
LOC100290090          0.122   PREDICTED: hypothetical protein XP_002348037 
LOC100288446          0.122   PREDICTED: hypothetical protein XP_002343740 
MUC7                  0.018   mucin 7, secreted precursor 
MUC7                  0.018   mucin 7, secreted precursor 
MUC7                  0.018   mucin 7, secreted precursor 
FAM101B               0.016   hypothetical protein LOC359845 
ANO8                  0.014   anoctamin 8 
SMARCC2               0.014   SWI/SNF-related matrix-associated actin-dependent re...
SMARCC2               0.014   SWI/SNF-related matrix-associated actin-dependent re...
SMARCC2               0.014   SWI/SNF-related matrix-associated actin-dependent r...
PCDHGA11              0.014   protocadherin gamma subfamily A, 11 isoform 1 precur...
LOC100286967          0.014   PREDICTED: hypothetical protein XP_002342247 
RERE                  0.012   atrophin-1 like protein isoform b 
RERE                  0.012   atrophin-1 like protein isoform a 
RERE                  0.012   atrophin-1 like protein isoform a 
MUC5AC                0.010   mucin 5AC 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press