Guide to the Human Genome
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Name: LOC100291794 Sequence: fasta or formatted (454aa) NCBI GI: 239757391
Description:

PREDICTED: hypothetical protein XP_002345269

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.9         36           2
 C cysteine            1.8          8           1
 D aspartate           1.5          7           1
 E glutamate           3.5         16           2
 F phenylalanine       9.7         44           1
 G glycine             7.0         32           2
 H histidine           2.0          9           1
 I isoleucine          4.2         19           2
 K lysine              4.0         18           2
 L leucine             9.9         45           2
 M methionine          3.5         16           1
 N asparagine          4.8         22           2
 P proline             6.8         31           3
 Q glutamine           2.6         12           1
 R arginine            4.6         21           2
 S serine             12.1         55           3
 T threonine           7.3         33           2
 V valine              5.1         23           2
 W tryptophan          0.9          4           1
 Y tyrosine            0.7          3           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002345269 
LOC100290152          1.000   PREDICTED: hypothetical protein XP_002348038 
LOC100288507          1.000   PREDICTED: hypothetical protein XP_002343741 
LOC100129081          0.200   PREDICTED: hypothetical protein 
LOC100129081          0.200   PREDICTED: hypothetical protein 
LOC100129081          0.200   PREDICTED: hypothetical protein 
LOC100291846          0.195   PREDICTED: hypothetical protein XP_002345270 
LOC100290090          0.183   PREDICTED: hypothetical protein XP_002348037 
LOC100288446          0.183   PREDICTED: hypothetical protein XP_002343740 
LOC100130710          0.178   PREDICTED: hypothetical protein 
LOC100130710          0.178   PREDICTED: hypothetical protein 
LOC100294029          0.144   PREDICTED: hypothetical protein 
LOC100130710          0.129   PREDICTED: hypothetical protein 
LOC100291582          0.074   PREDICTED: hypothetical protein XP_002345268 
LOC100290322          0.074   PREDICTED: hypothetical protein XP_002348039 
LOC100288722          0.074   PREDICTED: hypothetical protein XP_002343742 
SRRM1                 0.016   serine/arginine repetitive matrix 1 
C13orf23              0.016   hypothetical protein LOC80209 isoform 2 
C13orf23              0.016   hypothetical protein LOC80209 isoform 1 
LOC100288658          0.015   PREDICTED: hypothetical protein XP_002342750 
LOC100288658          0.015   PREDICTED: hypothetical protein 
LOC100133305          0.014   PREDICTED: hypothetical protein 
LOC100133305          0.014   PREDICTED: hypothetical protein 
EVL                   0.014   Enah/Vasp-like 
FLJ22184              0.014   PREDICTED: hypothetical protein FLJ22184 
FLJ22184              0.014   PREDICTED: hypothetical protein FLJ22184 
FLJ22184              0.014   PREDICTED: hypothetical protein LOC80164 
SCNN1B                0.012   sodium channel, nonvoltage-gated 1, beta 
LOC338758             0.012   PREDICTED: hypothetical protein 
LOC338758             0.012   PREDICTED: hypothetical protein 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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