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Search of human proteins with 239746380
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239746380 PREDICTED: hypothetical protein XP_002343701 [Homo
sapiens]
(118 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239751890 PREDICTED: hypothetical protein XP_002348023 [Homo ... 248 7e-67
gi|239746380 PREDICTED: hypothetical protein XP_002343701 [Homo ... 248 7e-67
gi|239757398 PREDICTED: similar to CGI-146 protein [Homo sapiens] 244 1e-65
gi|38708309 PPPDE peptidase domain containing 1 [Homo sapiens] 227 1e-60
gi|63055040 PPPDE peptidase domain containing 2 [Homo sapiens] 45 2e-05
gi|31563330 A-kinase anchor protein 13 isoform 1 [Homo sapiens] 28 1.5
gi|21493029 A-kinase anchor protein 13 isoform 2 [Homo sapiens] 28 1.5
gi|36031016 CTCL tumor antigen L14-2 [Homo sapiens] 28 1.5
gi|29029559 CSE1 chromosome segregation 1-like protein [Homo sap... 28 2.0
gi|94721246 placental alkaline phosphatase preproprotein [Homo s... 27 3.5
gi|33695107 G protein-coupled receptor 55 [Homo sapiens] 27 3.5
gi|157266296 placental-like alkaline phosphatase preproprotein [... 27 3.5
gi|118582286 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase... 26 5.9
gi|32455260 peroxiredoxin 5 isoform b precursor [Homo sapiens] 26 7.7
gi|6912238 peroxiredoxin 5 isoform a precursor [Homo sapiens] 26 7.7
gi|110349788 absent, small, or homeotic 1-like [Homo sapiens] 26 7.7
gi|112734859 zinc finger protein 654 [Homo sapiens] 26 7.7
>gi|239751890 PREDICTED: hypothetical protein XP_002348023 [Homo
sapiens]
Length = 118
Score = 248 bits (633), Expect = 7e-67
Identities = 118/118 (100%), Positives = 118/118 (100%)
Query: 1 MGANQLVVLNVCDMYWMKEYTSSIGIGVFHSEIEVYGREFAYGGHPYPFSGIFEISPGNA 60
MGANQLVVLNVCDMYWMKEYTSSIGIGVFHSEIEVYGREFAYGGHPYPFSGIFEISPGNA
Sbjct: 1 MGANQLVVLNVCDMYWMKEYTSSIGIGVFHSEIEVYGREFAYGGHPYPFSGIFEISPGNA 60
Query: 61 SELGEPFKFKEVVLGSTDFLEDDIEKIVEELGKEYKGNVYHLMHKNCNHFSSALSEVN 118
SELGEPFKFKEVVLGSTDFLEDDIEKIVEELGKEYKGNVYHLMHKNCNHFSSALSEVN
Sbjct: 61 SELGEPFKFKEVVLGSTDFLEDDIEKIVEELGKEYKGNVYHLMHKNCNHFSSALSEVN 118
>gi|239746380 PREDICTED: hypothetical protein XP_002343701 [Homo
sapiens]
Length = 118
Score = 248 bits (633), Expect = 7e-67
Identities = 118/118 (100%), Positives = 118/118 (100%)
Query: 1 MGANQLVVLNVCDMYWMKEYTSSIGIGVFHSEIEVYGREFAYGGHPYPFSGIFEISPGNA 60
MGANQLVVLNVCDMYWMKEYTSSIGIGVFHSEIEVYGREFAYGGHPYPFSGIFEISPGNA
Sbjct: 1 MGANQLVVLNVCDMYWMKEYTSSIGIGVFHSEIEVYGREFAYGGHPYPFSGIFEISPGNA 60
Query: 61 SELGEPFKFKEVVLGSTDFLEDDIEKIVEELGKEYKGNVYHLMHKNCNHFSSALSEVN 118
SELGEPFKFKEVVLGSTDFLEDDIEKIVEELGKEYKGNVYHLMHKNCNHFSSALSEVN
Sbjct: 61 SELGEPFKFKEVVLGSTDFLEDDIEKIVEELGKEYKGNVYHLMHKNCNHFSSALSEVN 118
>gi|239757398 PREDICTED: similar to CGI-146 protein [Homo sapiens]
Length = 118
Score = 244 bits (622), Expect = 1e-65
Identities = 117/118 (99%), Positives = 117/118 (99%)
Query: 1 MGANQLVVLNVCDMYWMKEYTSSIGIGVFHSEIEVYGREFAYGGHPYPFSGIFEISPGNA 60
MGANQLVVLNV DMYWMKEYTSSIGIGVFHSEIEVYGREFAYGGHPYPFSGIFEISPGNA
Sbjct: 1 MGANQLVVLNVYDMYWMKEYTSSIGIGVFHSEIEVYGREFAYGGHPYPFSGIFEISPGNA 60
Query: 61 SELGEPFKFKEVVLGSTDFLEDDIEKIVEELGKEYKGNVYHLMHKNCNHFSSALSEVN 118
SELGEPFKFKEVVLGSTDFLEDDIEKIVEELGKEYKGNVYHLMHKNCNHFSSALSEVN
Sbjct: 61 SELGEPFKFKEVVLGSTDFLEDDIEKIVEELGKEYKGNVYHLMHKNCNHFSSALSEVN 118
>gi|38708309 PPPDE peptidase domain containing 1 [Homo sapiens]
Length = 194
Score = 227 bits (579), Expect = 1e-60
Identities = 111/118 (94%), Positives = 112/118 (94%), Gaps = 1/118 (0%)
Query: 1 MGANQLVVLNVCDMYWMKEYTSSIGIGVFHSEIEVYGREFAYGGHPYPFSGIFEISPGNA 60
MGANQLVVLNV DMYWM EYTSSIGIGVFHS IEVYGREFAYGGHPYPFSGIFEISPGNA
Sbjct: 1 MGANQLVVLNVYDMYWMNEYTSSIGIGVFHSGIEVYGREFAYGGHPYPFSGIFEISPGNA 60
Query: 61 SELGEPFKFKE-VVLGSTDFLEDDIEKIVEELGKEYKGNVYHLMHKNCNHFSSALSEV 117
SELGE FKFKE VVLGSTDFLEDDIEKIVEELGKEYKGN YHLMHKNCNHFSSALSE+
Sbjct: 61 SELGETFKFKEAVVLGSTDFLEDDIEKIVEELGKEYKGNAYHLMHKNCNHFSSALSEI 118
>gi|63055040 PPPDE peptidase domain containing 2 [Homo sapiens]
Length = 168
Score = 44.7 bits (104), Expect = 2e-05
Identities = 29/91 (31%), Positives = 47/91 (51%), Gaps = 9/91 (9%)
Query: 27 GVFHSEIEVYGREFAYGGHPYPFSGIFEISPGNASELGEPFKFKEVVLGSTDFLEDDIEK 86
G++H+ I V+ EF +G GI PG LG P +V GST+ E+ +
Sbjct: 35 GIWHTSIVVHKDEFFFGS-----GGISSCPPGGTL-LGPPDSVVDV--GSTEVTEEIFLE 86
Query: 87 IVEELGKE-YKGNVYHLMHKNCNHFSSALSE 116
+ LG+ ++G Y+L NCN FS+ +++
Sbjct: 87 YLSSLGESLFRGEAYNLFEHNCNTFSNEVAQ 117
>gi|31563330 A-kinase anchor protein 13 isoform 1 [Homo sapiens]
Length = 2817
Score = 28.1 bits (61), Expect = 1.5
Identities = 19/66 (28%), Positives = 29/66 (43%)
Query: 50 SGIFEISPGNASELGEPFKFKEVVLGSTDFLEDDIEKIVEELGKEYKGNVYHLMHKNCNH 109
S E+S NA EL PF +E V E+D+E E + + + N+
Sbjct: 1621 SSSLEVSSANAEELRHPFSGEERVDSLVSLSEEDLESDQREHRMFDQQICHRSKQQGFNY 1680
Query: 110 FSSALS 115
+SA+S
Sbjct: 1681 CTSAIS 1686
>gi|21493029 A-kinase anchor protein 13 isoform 2 [Homo sapiens]
Length = 2813
Score = 28.1 bits (61), Expect = 1.5
Identities = 19/66 (28%), Positives = 29/66 (43%)
Query: 50 SGIFEISPGNASELGEPFKFKEVVLGSTDFLEDDIEKIVEELGKEYKGNVYHLMHKNCNH 109
S E+S NA EL PF +E V E+D+E E + + + N+
Sbjct: 1617 SSSLEVSSANAEELRHPFSGEERVDSLVSLSEEDLESDQREHRMFDQQICHRSKQQGFNY 1676
Query: 110 FSSALS 115
+SA+S
Sbjct: 1677 CTSAIS 1682
>gi|36031016 CTCL tumor antigen L14-2 [Homo sapiens]
Length = 898
Score = 28.1 bits (61), Expect = 1.5
Identities = 13/41 (31%), Positives = 25/41 (60%)
Query: 78 DFLEDDIEKIVEELGKEYKGNVYHLMHKNCNHFSSALSEVN 118
+F+ED I+++VEE+ K+ K +++ + SS S+ N
Sbjct: 780 EFMEDHIKQLVEEIRKKTKIIQSYILREESGTLSSEASDFN 820
>gi|29029559 CSE1 chromosome segregation 1-like protein [Homo
sapiens]
Length = 971
Score = 27.7 bits (60), Expect = 2.0
Identities = 21/80 (26%), Positives = 31/80 (38%), Gaps = 2/80 (2%)
Query: 39 EFAYGGHPYPFS--GIFEISPGNASELGEPFKFKEVVLGSTDFLEDDIEKIVEELGKEYK 96
E G YP + E S N ++ FK + + +ED+ KI E K
Sbjct: 34 ESVEGNQNYPLLLLTLLEKSQDNVIKVCASVTFKNYIKRNWRIVEDEPNKICEADRVAIK 93
Query: 97 GNVYHLMHKNCNHFSSALSE 116
N+ HLM + LS+
Sbjct: 94 ANIVHLMLSSPEQIQKQLSD 113
>gi|94721246 placental alkaline phosphatase preproprotein [Homo
sapiens]
Length = 535
Score = 26.9 bits (58), Expect = 3.5
Identities = 10/23 (43%), Positives = 16/23 (69%)
Query: 40 FAYGGHPYPFSGIFEISPGNASE 62
F++GG+P S IF ++PG A +
Sbjct: 384 FSFGGYPLRGSSIFGLAPGKARD 406
>gi|33695107 G protein-coupled receptor 55 [Homo sapiens]
Length = 319
Score = 26.9 bits (58), Expect = 3.5
Identities = 10/29 (34%), Positives = 16/29 (55%)
Query: 8 VLNVCDMYWMKEYTSSIGIGVFHSEIEVY 36
+ +C W+ +T SI I FH ++E Y
Sbjct: 138 IFGICCTIWVLVWTGSIPIYSFHGKVEKY 166
>gi|157266296 placental-like alkaline phosphatase preproprotein
[Homo sapiens]
Length = 532
Score = 26.9 bits (58), Expect = 3.5
Identities = 10/23 (43%), Positives = 16/23 (69%)
Query: 40 FAYGGHPYPFSGIFEISPGNASE 62
F++GG+P S IF ++PG A +
Sbjct: 381 FSFGGYPLRGSSIFGLAPGKARD 403
>gi|118582286 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 1
[Homo sapiens]
Length = 471
Score = 26.2 bits (56), Expect = 5.9
Identities = 15/45 (33%), Positives = 26/45 (57%), Gaps = 3/45 (6%)
Query: 70 KEVVLGSTDFLEDDIEKIVEELGKE---YKGNVYHLMHKNCNHFS 111
++V LGS D+++ D EK++E+ K Y+ N L + +H S
Sbjct: 172 RQVKLGSPDYIDCDREKVLEDFLKRIECYEVNYQPLDEELDSHLS 216
>gi|32455260 peroxiredoxin 5 isoform b precursor [Homo sapiens]
Length = 170
Score = 25.8 bits (55), Expect = 7.7
Identities = 14/31 (45%), Positives = 16/31 (51%)
Query: 44 GHPYPFSGIFEISPGNASELGEPFKFKEVVL 74
G P +FE PGN L E FK K+ VL
Sbjct: 59 GDAIPAVEVFEGEPGNKVNLAELFKGKKGVL 89
>gi|6912238 peroxiredoxin 5 isoform a precursor [Homo sapiens]
Length = 214
Score = 25.8 bits (55), Expect = 7.7
Identities = 14/31 (45%), Positives = 16/31 (51%)
Query: 44 GHPYPFSGIFEISPGNASELGEPFKFKEVVL 74
G P +FE PGN L E FK K+ VL
Sbjct: 59 GDAIPAVEVFEGEPGNKVNLAELFKGKKGVL 89
>gi|110349788 absent, small, or homeotic 1-like [Homo sapiens]
Length = 2964
Score = 25.8 bits (55), Expect = 7.7
Identities = 10/30 (33%), Positives = 16/30 (53%)
Query: 89 EELGKEYKGNVYHLMHKNCNHFSSALSEVN 118
+ +G+ YK H H +C H S + S +N
Sbjct: 1522 DAVGERYKHKEKHRCHMSCPHLSPSKSLIN 1551
>gi|112734859 zinc finger protein 654 [Homo sapiens]
Length = 581
Score = 25.8 bits (55), Expect = 7.7
Identities = 9/27 (33%), Positives = 15/27 (55%)
Query: 82 DDIEKIVEELGKEYKGNVYHLMHKNCN 108
+D + ++ L + NVY +H NCN
Sbjct: 250 EDSQHFIDHLNRHSYPNVYFCLHFNCN 276
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.318 0.138 0.418
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,625,378
Number of Sequences: 37866
Number of extensions: 199263
Number of successful extensions: 440
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 423
Number of HSP's gapped (non-prelim): 17
length of query: 118
length of database: 18,247,518
effective HSP length: 88
effective length of query: 30
effective length of database: 14,915,310
effective search space: 447459300
effective search space used: 447459300
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.