Guide to the Human Genome
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Name: LOC100288211 Sequence: fasta or formatted (118aa) NCBI GI: 239746380
Description:

PREDICTED: hypothetical protein XP_002343701

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             3.4          4           1
 C cysteine            1.7          2           1
 D aspartate           3.4          4           2
 E glutamate          11.9         14           2
 F phenylalanine       6.8          8           1
 G glycine            10.2         12           2
 H histidine           4.2          5           1
 I isoleucine          5.9          7           1
 K lysine              5.9          7           1
 L leucine             6.8          8           1
 M methionine          3.4          4           1
 N asparagine          5.9          7           1
 P proline             3.4          4           1
 Q glutamine           0.8          1           1
 R arginine            0.8          1           1
 S serine              8.5         10           2
 T threonine           1.7          2           1
 V valine              8.5         10           2
 W tryptophan          0.8          1           1
 Y tyrosine            5.9          7           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002343701 
LOC100291497          1.000   PREDICTED: hypothetical protein XP_002348023 
LOC100293658          0.982   PREDICTED: similar to CGI-146 protein 
PPPDE1                0.906   PPPDE peptidase domain containing 1 
PPPDE2                0.090   PPPDE peptidase domain containing 2 
AKAP13                0.013   A-kinase anchor protein 13 isoform 1 
AKAP13                0.013   A-kinase anchor protein 13 isoform 2 
C10orf118             0.013   CTCL tumor antigen L14-2 
CSE1L                 0.013   CSE1 chromosome segregation 1-like protein 
ALPP                  0.009   placental alkaline phosphatase preproprotein 
GPR55                 0.009   G protein-coupled receptor 55 
ALPPL2                0.009   placental-like alkaline phosphatase preproprotein [...
PFKFB1                0.004   6-phosphofructo-2-kinase/fructose-2,6-biphosphatase...
PRDX5                 0.004   peroxiredoxin 5 isoform b precursor 
PRDX5                 0.004   peroxiredoxin 5 isoform a precursor 
ASH1L                 0.004   absent, small, or homeotic 1-like 
ZNF654                0.004   zinc finger protein 654 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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