Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Search of human proteins with 239746124

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|239746124 PREDICTED: hypothetical protein XP_002344195 [Homo
sapiens]
         (120 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|239751609 PREDICTED: hypothetical protein XP_002347928 [Homo ...   249   3e-67
gi|239746124 PREDICTED: hypothetical protein XP_002344195 [Homo ...   249   3e-67
gi|239757103 PREDICTED: similar to fos39347_1 [Homo sapiens]          217   2e-57
gi|5032161 elongin C [Homo sapiens]                                   133   3e-32
gi|169213749 PREDICTED: similar to elongin C [Homo sapiens]           122   8e-29
gi|169214183 PREDICTED: similar to elongin C [Homo sapiens]           122   8e-29
gi|169213526 PREDICTED: similar to elongin C [Homo sapiens]           122   8e-29
gi|239752879 PREDICTED: similar to elongin C [Homo sapiens]            92   7e-20
gi|239747430 PREDICTED: similar to elongin C [Homo sapiens]            92   7e-20
gi|239741256 PREDICTED: hypothetical protein XP_002342145 [Homo ...    91   3e-19
gi|113430993 PREDICTED: similar to elongin C [Homo sapiens]            63   4e-11
gi|66912194 RAB3A interacting protein isoform A [Homo sapiens]         29   0.72 
gi|41281856 RAB3A interacting protein isoform alpha 2 [Homo sapi...    29   0.72 
gi|28274699 RAB3A interacting protein isoform alpha 1 [Homo sapi...    29   0.72 
gi|22749259 poly (ADP-ribose) polymerase family, member 15 isofo...    29   0.94 
gi|165377137 poly (ADP-ribose) polymerase family, member 15 isof...    29   0.94 
gi|68299799 Purkinje cell protein 2 [Homo sapiens]                     28   1.6  
gi|7657540 schwannomin interacting protein 1 [Homo sapiens]            27   2.7  
gi|62988361 absent in melanoma 1 [Homo sapiens]                        26   7.9  

>gi|239751609 PREDICTED: hypothetical protein XP_002347928 [Homo
           sapiens]
          Length = 120

 Score =  249 bits (636), Expect = 3e-67
 Identities = 120/120 (100%), Positives = 120/120 (100%)

Query: 1   MNGEEKSCSGYGGPDAMDGKLVSSDDDDFIVKREHTRASGIRKAVLSGPGQSAENETDQV 60
           MNGEEKSCSGYGGPDAMDGKLVSSDDDDFIVKREHTRASGIRKAVLSGPGQSAENETDQV
Sbjct: 1   MNGEEKSCSGYGGPDAMDGKLVSSDDDDFIVKREHTRASGIRKAVLSGPGQSAENETDQV 60

Query: 61  NFREIPPRCYPKHAKACIYFTYKVHYSNSSTEIPEFLTALEVLMASDFLDIYIFLFFLFF 120
           NFREIPPRCYPKHAKACIYFTYKVHYSNSSTEIPEFLTALEVLMASDFLDIYIFLFFLFF
Sbjct: 61  NFREIPPRCYPKHAKACIYFTYKVHYSNSSTEIPEFLTALEVLMASDFLDIYIFLFFLFF 120


>gi|239746124 PREDICTED: hypothetical protein XP_002344195 [Homo
           sapiens]
          Length = 120

 Score =  249 bits (636), Expect = 3e-67
 Identities = 120/120 (100%), Positives = 120/120 (100%)

Query: 1   MNGEEKSCSGYGGPDAMDGKLVSSDDDDFIVKREHTRASGIRKAVLSGPGQSAENETDQV 60
           MNGEEKSCSGYGGPDAMDGKLVSSDDDDFIVKREHTRASGIRKAVLSGPGQSAENETDQV
Sbjct: 1   MNGEEKSCSGYGGPDAMDGKLVSSDDDDFIVKREHTRASGIRKAVLSGPGQSAENETDQV 60

Query: 61  NFREIPPRCYPKHAKACIYFTYKVHYSNSSTEIPEFLTALEVLMASDFLDIYIFLFFLFF 120
           NFREIPPRCYPKHAKACIYFTYKVHYSNSSTEIPEFLTALEVLMASDFLDIYIFLFFLFF
Sbjct: 61  NFREIPPRCYPKHAKACIYFTYKVHYSNSSTEIPEFLTALEVLMASDFLDIYIFLFFLFF 120


>gi|239757103 PREDICTED: similar to fos39347_1 [Homo sapiens]
          Length = 181

 Score =  217 bits (552), Expect = 2e-57
 Identities = 105/109 (96%), Positives = 105/109 (96%)

Query: 1   MNGEEKSCSGYGGPDAMDGKLVSSDDDDFIVKREHTRASGIRKAVLSGPGQSAENETDQV 60
           MNGEEKSCSGYGGPDAMDGKLVSSDDDDFIVKREHTRASGIRKAVLSGPGQSAENETDQV
Sbjct: 1   MNGEEKSCSGYGGPDAMDGKLVSSDDDDFIVKREHTRASGIRKAVLSGPGQSAENETDQV 60

Query: 61  NFREIPPRCYPKHAKACIYFTYKVHYSNSSTEIPEFLTALEVLMASDFL 109
           NFREIPPRCYPKHAKACIYFT KVHYSNSSTEIPEFLTALEVLM   FL
Sbjct: 61  NFREIPPRCYPKHAKACIYFTCKVHYSNSSTEIPEFLTALEVLMIQHFL 109


>gi|5032161 elongin C [Homo sapiens]
          Length = 112

 Score =  133 bits (335), Expect = 3e-32
 Identities = 72/114 (63%), Positives = 85/114 (74%), Gaps = 7/114 (6%)

Query: 1   MNGEEKSCSGYGGPDAMDGKLVSSDDDDFIVKREHTRASGIRKAVLSGPGQSAENETDQV 60
           M+GEEK+  G  GPDAM  KL+SSD  +FIVKREH   SG  KA+LSGPGQ AENET++V
Sbjct: 1   MDGEEKTYGGCEGPDAMYVKLISSDGHEFIVKREHALTSGTIKAMLSGPGQFAENETNEV 60

Query: 61  NFREIPPRCYPKHAKACIYFTYKVHYSNSSTEIPEF----LTALEVLMASDFLD 110
           NFREIP       +K C+YFTYKV Y+NSSTEIPEF      ALE+LMA++FLD
Sbjct: 61  NFREIPSHVL---SKVCMYFTYKVRYTNSSTEIPEFPIAPEIALELLMAANFLD 111


>gi|169213749 PREDICTED: similar to elongin C [Homo sapiens]
          Length = 115

 Score =  122 bits (305), Expect = 8e-29
 Identities = 65/114 (57%), Positives = 80/114 (70%), Gaps = 4/114 (3%)

Query: 1   MNGEEKSCSGYGGPDAMDGKLVSSDDDDFIVKREHTRASGIRKAVLSGPGQSAENETDQV 60
           M+GE+K+  G  GPDA+  KL+ SD  +FIVK+E    SG  KA+LSGPGQ AENE D+V
Sbjct: 1   MDGEKKTYGGCEGPDAVYVKLILSDGHEFIVKKERALTSGTIKAMLSGPGQFAENEADEV 60

Query: 61  NFREIPPRCYPKHAKACIYFTYKVHYSNSSTEIPEFLT----ALEVLMASDFLD 110
           +FREIP     K    C+YF YKV Y+NSSTEIPEF      ALE+LMA++FLD
Sbjct: 61  HFREIPSHVLSKVYALCMYFMYKVRYANSSTEIPEFPVAPEIALELLMAANFLD 114


>gi|169214183 PREDICTED: similar to elongin C [Homo sapiens]
          Length = 115

 Score =  122 bits (305), Expect = 8e-29
 Identities = 65/114 (57%), Positives = 80/114 (70%), Gaps = 4/114 (3%)

Query: 1   MNGEEKSCSGYGGPDAMDGKLVSSDDDDFIVKREHTRASGIRKAVLSGPGQSAENETDQV 60
           M+GE+K+  G  GPDA+  KL+ SD  +FIVK+E    SG  KA+LSGPGQ AENE D+V
Sbjct: 1   MDGEKKTYGGCEGPDAVYVKLILSDGHEFIVKKERALTSGTIKAMLSGPGQFAENEADEV 60

Query: 61  NFREIPPRCYPKHAKACIYFTYKVHYSNSSTEIPEFLT----ALEVLMASDFLD 110
           +FREIP     K    C+YF YKV Y+NSSTEIPEF      ALE+LMA++FLD
Sbjct: 61  HFREIPSHVLSKVYALCMYFMYKVRYANSSTEIPEFPVAPEIALELLMAANFLD 114


>gi|169213526 PREDICTED: similar to elongin C [Homo sapiens]
          Length = 115

 Score =  122 bits (305), Expect = 8e-29
 Identities = 65/114 (57%), Positives = 80/114 (70%), Gaps = 4/114 (3%)

Query: 1   MNGEEKSCSGYGGPDAMDGKLVSSDDDDFIVKREHTRASGIRKAVLSGPGQSAENETDQV 60
           M+GE+K+  G  GPDA+  KL+ SD  +FIVK+E    SG  KA+LSGPGQ AENE D+V
Sbjct: 1   MDGEKKTYGGCEGPDAVYVKLILSDGHEFIVKKERALTSGTIKAMLSGPGQFAENEADEV 60

Query: 61  NFREIPPRCYPKHAKACIYFTYKVHYSNSSTEIPEFLT----ALEVLMASDFLD 110
           +FREIP     K    C+YF YKV Y+NSSTEIPEF      ALE+LMA++FLD
Sbjct: 61  HFREIPSHVLSKVYALCMYFMYKVRYANSSTEIPEFPVAPEIALELLMAANFLD 114


>gi|239752879 PREDICTED: similar to elongin C [Homo sapiens]
          Length = 269

 Score = 92.4 bits (228), Expect = 7e-20
 Identities = 56/113 (49%), Positives = 70/113 (61%), Gaps = 7/113 (6%)

Query: 2   NGEEKSCSGYGGPDAMDGKLVSSDDDDFIVKREHTRASGIRKAVLSGPGQSAENETDQVN 61
           +G +K+     GPDAM  KL+SS     IVKRE+   S   KA+LSGPGQ AENE  +V+
Sbjct: 159 DGRKKTYGDCEGPDAMYVKLISSSGHKVIVKREYAVTSITIKAMLSGPGQLAENEISEVS 218

Query: 62  FREIPPRCYPKHAKACIYFTYKVHYSNSSTEIPEF----LTALEVLMASDFLD 110
           FREI        +K C+Y TYK HY+NSSTEI +F      A E+LM  +FLD
Sbjct: 219 FREISSHVL---SKVCMYVTYKGHYTNSSTEILKFPAAPQLAPELLMTVNFLD 268


>gi|239747430 PREDICTED: similar to elongin C [Homo sapiens]
          Length = 269

 Score = 92.4 bits (228), Expect = 7e-20
 Identities = 56/113 (49%), Positives = 70/113 (61%), Gaps = 7/113 (6%)

Query: 2   NGEEKSCSGYGGPDAMDGKLVSSDDDDFIVKREHTRASGIRKAVLSGPGQSAENETDQVN 61
           +G +K+     GPDAM  KL+SS     IVKRE+   S   KA+LSGPGQ AENE  +V+
Sbjct: 159 DGRKKTYGDCEGPDAMYVKLISSSGHKVIVKREYAVTSITIKAMLSGPGQLAENEISEVS 218

Query: 62  FREIPPRCYPKHAKACIYFTYKVHYSNSSTEIPEF----LTALEVLMASDFLD 110
           FREI        +K C+Y TYK HY+NSSTEI +F      A E+LM  +FLD
Sbjct: 219 FREISSHVL---SKVCMYVTYKGHYTNSSTEILKFPAAPQIAPELLMTVNFLD 268


>gi|239741256 PREDICTED: hypothetical protein XP_002342145 [Homo
           sapiens]
          Length = 287

 Score = 90.5 bits (223), Expect = 3e-19
 Identities = 55/113 (48%), Positives = 69/113 (61%), Gaps = 7/113 (6%)

Query: 2   NGEEKSCSGYGGPDAMDGKLVSSDDDDFIVKREHTRASGIRKAVLSGPGQSAENETDQVN 61
           +G +K+     GPDAM  KL+SS     IVKRE+   S   KA+LSGPGQ AENE  +V+
Sbjct: 177 DGRKKTYGDCEGPDAMYVKLISSSGHKVIVKREYAVTSITIKAMLSGPGQLAENEISEVS 236

Query: 62  FREIPPRCYPKHAKACIYFTYKVHYSNSSTEIPEF----LTALEVLMASDFLD 110
           FREI        +K C+Y TY  HY+NSSTEI +F      A E+LM  +FLD
Sbjct: 237 FREISSHVL---SKVCMYVTYNGHYTNSSTEILKFPAAPQIAPELLMTVNFLD 286


>gi|113430993 PREDICTED: similar to elongin C [Homo sapiens]
          Length = 101

 Score = 63.2 bits (152), Expect = 4e-11
 Identities = 41/98 (41%), Positives = 56/98 (57%), Gaps = 8/98 (8%)

Query: 1  MNGEEKSCSGYGGPDAM--DGKLVSSDDDDFIVKREHTRASGIRKAVLSGPGQSAENETD 58
          M+ EEK+ S     + M  +G L+S +   F+VK    + S   K +L+GP   AE  T 
Sbjct: 1  MDEEEKTYSVCESSNTMMSNGYLLSPE---FLVKIRTAQTSATMKPLLTGPDHFAEKGTI 57

Query: 59 QVNFREIPPRCYPKHAKACIYFTYKVHYSNSSTEIPEF 96
          +VN R+ P +  P   KAC YFTY  HY+ SSTEIP+F
Sbjct: 58 EVNLRDNPSQVLP---KACKYFTYIFHYTYSSTEIPKF 92


>gi|66912194 RAB3A interacting protein isoform A [Homo sapiens]
          Length = 254

 Score = 29.3 bits (64), Expect = 0.72
 Identities = 16/55 (29%), Positives = 24/55 (43%), Gaps = 3/55 (5%)

Query: 31  VKREHTRASGIRKAVLSGPGQSAENET---DQVNFREIPPRCYPKHAKACIYFTY 82
           VK       G +K  L+G  +S ++     D  N+  I P C  +    C +FTY
Sbjct: 160 VKASAVECGGPKKCALTGQSKSCKHRIKLGDSSNYYYISPFCRYRITSVCNFFTY 214


>gi|41281856 RAB3A interacting protein isoform alpha 2 [Homo
           sapiens]
          Length = 476

 Score = 29.3 bits (64), Expect = 0.72
 Identities = 16/55 (29%), Positives = 24/55 (43%), Gaps = 3/55 (5%)

Query: 31  VKREHTRASGIRKAVLSGPGQSAENET---DQVNFREIPPRCYPKHAKACIYFTY 82
           VK       G +K  L+G  +S ++     D  N+  I P C  +    C +FTY
Sbjct: 382 VKASAVECGGPKKCALTGQSKSCKHRIKLGDSSNYYYISPFCRYRITSVCNFFTY 436


>gi|28274699 RAB3A interacting protein isoform alpha 1 [Homo
           sapiens]
          Length = 460

 Score = 29.3 bits (64), Expect = 0.72
 Identities = 16/55 (29%), Positives = 24/55 (43%), Gaps = 3/55 (5%)

Query: 31  VKREHTRASGIRKAVLSGPGQSAENET---DQVNFREIPPRCYPKHAKACIYFTY 82
           VK       G +K  L+G  +S ++     D  N+  I P C  +    C +FTY
Sbjct: 366 VKASAVECGGPKKCALTGQSKSCKHRIKLGDSSNYYYISPFCRYRITSVCNFFTY 420


>gi|22749259 poly (ADP-ribose) polymerase family, member 15 isoform
           2 [Homo sapiens]
          Length = 444

 Score = 28.9 bits (63), Expect = 0.94
 Identities = 14/38 (36%), Positives = 23/38 (60%), Gaps = 3/38 (7%)

Query: 22  VSSDDDDFIVK---REHTRASGIRKAVLSGPGQSAENE 56
           ++++  D IV    R   R SG+ +A+L G GQ+ E+E
Sbjct: 79  IATEQVDVIVNSTARTFNRKSGVSRAILEGAGQAVESE 116


>gi|165377137 poly (ADP-ribose) polymerase family, member 15 isoform
           1 [Homo sapiens]
          Length = 678

 Score = 28.9 bits (63), Expect = 0.94
 Identities = 14/38 (36%), Positives = 23/38 (60%), Gaps = 3/38 (7%)

Query: 22  VSSDDDDFIVK---REHTRASGIRKAVLSGPGQSAENE 56
           ++++  D IV    R   R SG+ +A+L G GQ+ E+E
Sbjct: 313 IATEQVDVIVNSTARTFNRKSGVSRAILEGAGQAVESE 350


>gi|68299799 Purkinje cell protein 2 [Homo sapiens]
          Length = 136

 Score = 28.1 bits (61), Expect = 1.6
 Identities = 21/61 (34%), Positives = 32/61 (52%), Gaps = 7/61 (11%)

Query: 1  MNGEEKSCSGYGGPDAMDGKLVSSDDDDFIVKREHT---RASGIRKAVLSGPGQSAENET 57
          M+ EEK+  G  GP A  G   S D + F     H    R  G R ++ +GPGQ+ ++++
Sbjct: 2  MDQEEKTEEG-SGPCAEAG---SPDQEGFFNLLSHVQGDRMEGQRCSLQAGPGQTTKSQS 57

Query: 58 D 58
          D
Sbjct: 58 D 58


>gi|7657540 schwannomin interacting protein 1 [Homo sapiens]
          Length = 487

 Score = 27.3 bits (59), Expect = 2.7
 Identities = 14/61 (22%), Positives = 28/61 (45%)

Query: 6   KSCSGYGGPDAMDGKLVSSDDDDFIVKREHTRASGIRKAVLSGPGQSAENETDQVNFREI 65
           K  S Y   D  + +  S DD DF+ +++  +A       ++ P    + E ++ N ++ 
Sbjct: 334 KQSSSYSDRDTTEEESESLDDMDFLTRQKKLQAEAKMALAMAKPMAKMQVEVEKQNRKKS 393

Query: 66  P 66
           P
Sbjct: 394 P 394


>gi|62988361 absent in melanoma 1 [Homo sapiens]
          Length = 1723

 Score = 25.8 bits (55), Expect = 7.9
 Identities = 11/46 (23%), Positives = 25/46 (54%)

Query: 27  DDFIVKREHTRASGIRKAVLSGPGQSAENETDQVNFREIPPRCYPK 72
           D  ++++E + A+  +  VL     +A++    V+ +++PP   PK
Sbjct: 401 DHKLLEKEDSEAADSKSLVLENVTDTAQDIPTTVDTKDLPPTAMPK 446


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.321    0.138    0.414 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,887,108
Number of Sequences: 37866
Number of extensions: 191015
Number of successful extensions: 559
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 535
Number of HSP's gapped (non-prelim): 19
length of query: 120
length of database: 18,247,518
effective HSP length: 89
effective length of query: 31
effective length of database: 14,877,444
effective search space: 461200764
effective search space used: 461200764
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)

Search results were obtained with NCBI BLAST and RefSeq entries.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press