Search of human proteins with 239746014

Search of human proteins with 239746014

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|239746014 PREDICTED: hypothetical protein LOC283846 [Homo
sapiens]
         (224 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|239746014 PREDICTED: hypothetical protein LOC283846 [Homo sap...   470   e-133
gi|239745494 PREDICTED: similar to NPIP-like protein ENSP0000034...   389   e-109
gi|239745607 PREDICTED: nuclear pore complex interacting protein...   333   5e-92
gi|239745430 PREDICTED: hypothetical protein XP_002343465 [Homo ...   276   1e-74
gi|239745418 PREDICTED: similar to GPS, PLAT and transmembrane d...   276   1e-74
gi|239745416 PREDICTED: similar to GPS, PLAT and transmembrane d...   276   1e-74
gi|239745482 PREDICTED: hypothetical protein [Homo sapiens]           251   5e-67
gi|209529739 hypothetical protein LOC100132247 [Homo sapiens]         244   3e-65
gi|157074225 nuclear pore complex interacting protein-like 3 [Ho...   244   3e-65
gi|239745501 PREDICTED: similar to acyl-CoA synthetase medium-ch...   241   3e-64
gi|169212906 PREDICTED: NPIP-like protein ENSP00000283050 isofor...   206   2e-53
gi|239745475 PREDICTED: similar to NPIP-like protein ENSP0000028...   182   2e-46
gi|239745469 PREDICTED: nuclear pore complex interacting protein...   181   3e-46
gi|239745414 PREDICTED: NPIP-like protein 2 isoform 2 [Homo sapi...   164   4e-41
gi|148596994 nuclear pore complex interacting protein [Homo sapi...   152   3e-37
gi|193290184 hypothetical protein LOC339047 [Homo sapiens]            149   2e-36
gi|73747844 ligase III, DNA, ATP-dependent isoform beta precurso...    30   1.3  
gi|73747829 ligase III, DNA, ATP-dependent isoform alpha precurs...    30   1.3  
gi|221316618 dystonin isoform 2 [Homo sapiens]                         29   3.7  
gi|7661696 hypothetical protein LOC26017 [Homo sapiens]                28   6.3  
gi|104526627 triadin [Homo sapiens]                                    28   6.3  
gi|115529449 upstream binding transcription factor, RNA polymera...    28   8.3  
gi|115529451 upstream binding transcription factor, RNA polymera...    28   8.3  
gi|7657671 upstream binding transcription factor, RNA polymerase...    28   8.3  
gi|50083279 centrosome protein 4 [Homo sapiens]                        28   8.3  

>gi|239746014 PREDICTED: hypothetical protein LOC283846 [Homo
           sapiens]
          Length = 224

 Score =  470 bits (1210), Expect = e-133
 Identities = 224/224 (100%), Positives = 224/224 (100%)

Query: 1   MRVRWMLFWLLFGLLLEFISHQCICMSLLKTILWSRNGHDGSTDVQQRAWRSNRCRQKGL 60
           MRVRWMLFWLLFGLLLEFISHQCICMSLLKTILWSRNGHDGSTDVQQRAWRSNRCRQKGL
Sbjct: 1   MRVRWMLFWLLFGLLLEFISHQCICMSLLKTILWSRNGHDGSTDVQQRAWRSNRCRQKGL 60

Query: 61  RSICMHTKKRVSSFPGNKIGLKDVITLWRHVETKVRAKIRKRKVTTKINHHDKINGKRKT 120
           RSICMHTKKRVSSFPGNKIGLKDVITLWRHVETKVRAKIRKRKVTTKINHHDKINGKRKT
Sbjct: 61  RSICMHTKKRVSSFPGNKIGLKDVITLWRHVETKVRAKIRKRKVTTKINHHDKINGKRKT 120

Query: 121 AKNQKMFQRVQELWRRAEDYHKRKIPPSARKPLCNWVSLLVFLAFGHSLPGQDMDTFFSL 180
           AKNQKMFQRVQELWRRAEDYHKRKIPPSARKPLCNWVSLLVFLAFGHSLPGQDMDTFFSL
Sbjct: 121 AKNQKMFQRVQELWRRAEDYHKRKIPPSARKPLCNWVSLLVFLAFGHSLPGQDMDTFFSL 180

Query: 181 QLCAQALQREMAERRAAYKPHSPIPVGNRVAQKHLHPHPVGPLI 224
           QLCAQALQREMAERRAAYKPHSPIPVGNRVAQKHLHPHPVGPLI
Sbjct: 181 QLCAQALQREMAERRAAYKPHSPIPVGNRVAQKHLHPHPVGPLI 224


>gi|239745494 PREDICTED: similar to NPIP-like protein
           ENSP00000346774 [Homo sapiens]
          Length = 221

 Score =  389 bits (1000), Expect = e-109
 Identities = 196/224 (87%), Positives = 201/224 (89%), Gaps = 3/224 (1%)

Query: 1   MRVRWMLFWLLFGLLLEFISHQCICMSLLKTILWSRNGHDGSTDVQQRAWRSNRCRQKGL 60
           MR+R   FWLL  LLL FISHQ   +SLLKTI WSRNGHDGSTDVQQRAWRSNR RQKGL
Sbjct: 1   MRLR---FWLLIWLLLGFISHQPTPVSLLKTIFWSRNGHDGSTDVQQRAWRSNRSRQKGL 57

Query: 61  RSICMHTKKRVSSFPGNKIGLKDVITLWRHVETKVRAKIRKRKVTTKINHHDKINGKRKT 120
           RSICMHTKKRVSSF GNKIGLKDVITL RHVETKVRAKIRKRKVTTKIN HDKINGKRKT
Sbjct: 58  RSICMHTKKRVSSFRGNKIGLKDVITLRRHVETKVRAKIRKRKVTTKINRHDKINGKRKT 117

Query: 121 AKNQKMFQRVQELWRRAEDYHKRKIPPSARKPLCNWVSLLVFLAFGHSLPGQDMDTFFSL 180
           A+ QKMFQR QEL RRAEDYHK KIPPSARK LCNWVSL VFLAF HSLPGQDMDTFFSL
Sbjct: 118 ARKQKMFQRAQELRRRAEDYHKCKIPPSARKALCNWVSLFVFLAFEHSLPGQDMDTFFSL 177

Query: 181 QLCAQALQREMAERRAAYKPHSPIPVGNRVAQKHLHPHPVGPLI 224
           QLCAQALQREMAER+AAY+ HSPIPVGNRV QKHLHPHPVGPLI
Sbjct: 178 QLCAQALQREMAERKAAYRHHSPIPVGNRVVQKHLHPHPVGPLI 221


>gi|239745607 PREDICTED: nuclear pore complex interacting
           protein-like 2 [Homo sapiens]
          Length = 265

 Score =  333 bits (855), Expect = 5e-92
 Identities = 167/201 (83%), Positives = 172/201 (85%), Gaps = 17/201 (8%)

Query: 24  ICMSLLKTILWSRNGHDGSTDVQQRAWRSNRCRQKGLRSICMHTKKRVSSFPGNKIGLKD 83
           +C+S LKTI WSRNGHDGSTDVQQRAWRSNR RQKG                 NKIGLKD
Sbjct: 82  LCVSFLKTIFWSRNGHDGSTDVQQRAWRSNRSRQKG-----------------NKIGLKD 124

Query: 84  VITLWRHVETKVRAKIRKRKVTTKINHHDKINGKRKTAKNQKMFQRVQELWRRAEDYHKR 143
           VITL RHVETKVRAKIRKRKVTTKIN HDKINGKRKTA+ QKMFQR QEL RRAEDYHK 
Sbjct: 125 VITLRRHVETKVRAKIRKRKVTTKINRHDKINGKRKTARKQKMFQRAQELRRRAEDYHKC 184

Query: 144 KIPPSARKPLCNWVSLLVFLAFGHSLPGQDMDTFFSLQLCAQALQREMAERRAAYKPHSP 203
           KIPPSARKPLCNWVSLLVFLAF HSLPGQDMDTFFSLQLCAQALQREMAER+AAY+ HSP
Sbjct: 185 KIPPSARKPLCNWVSLLVFLAFEHSLPGQDMDTFFSLQLCAQALQREMAERKAAYRHHSP 244

Query: 204 IPVGNRVAQKHLHPHPVGPLI 224
           IPVGNRV QKHLHPHPVGPLI
Sbjct: 245 IPVGNRVVQKHLHPHPVGPLI 265


>gi|239745430 PREDICTED: hypothetical protein XP_002343465 [Homo
           sapiens]
          Length = 317

 Score =  276 bits (705), Expect = 1e-74
 Identities = 154/257 (59%), Positives = 170/257 (66%), Gaps = 56/257 (21%)

Query: 5   WMLFWLLFGLLLEFISHQC---ICMSLLKTILWSRNGHDGSTDVQQRAWRSNRCRQKGLR 61
           W+L   +F    +F    C   +C+S LKTI  S+NGHDGSTDVQQRA RSN  RQ+G+ 
Sbjct: 60  WLLIITVFLRSYKFAISLCTSYLCVSFLKTIFPSQNGHDGSTDVQQRARRSNCRRQEGI- 118

Query: 62  SICMHTKKRVSSFPGNKIGLKDVITLWRHVETKVRAKIRKRKVTTKINHHDKINGKRKTA 121
                           KI L+D+ TLWR VETKVRAKIRK KVTTK+N HDKINGKRKTA
Sbjct: 119 ----------------KIVLEDIFTLWRQVETKVRAKIRKMKVTTKVNRHDKINGKRKTA 162

Query: 122 KNQ------------------------------------KMFQRVQELWRRAEDYHKRKI 145
           K                                      +MFQR Q L RRAEDY++ KI
Sbjct: 163 KEHLRKLSMKEREHGEKERQVSEAEENGKLDMKEIHTYMEMFQRAQALRRRAEDYYRCKI 222

Query: 146 PPSARKPLCNWVSLLVFLAFGHSLPGQDMDTFFSLQLCAQALQREMAERRAAYKPHSPIP 205
            PSARKPLCN VSLLVFLAFGHSLPGQDMDTFFSL+LCAQALQREMAER+AAYK HSPIP
Sbjct: 223 TPSARKPLCNRVSLLVFLAFGHSLPGQDMDTFFSLRLCAQALQREMAERKAAYKHHSPIP 282

Query: 206 VGNRVAQKHLHPHPVGP 222
           VGNRVAQKHLHPHPVGP
Sbjct: 283 VGNRVAQKHLHPHPVGP 299


>gi|239745418 PREDICTED: similar to GPS, PLAT and transmembrane
           domain-containing protein FLJ00285 [Homo sapiens]
          Length = 317

 Score =  276 bits (705), Expect = 1e-74
 Identities = 154/257 (59%), Positives = 170/257 (66%), Gaps = 56/257 (21%)

Query: 5   WMLFWLLFGLLLEFISHQC---ICMSLLKTILWSRNGHDGSTDVQQRAWRSNRCRQKGLR 61
           W+L   +F    +F    C   +C+S LKTI  S+NGHDGSTDVQQRA RSNR RQ+G+ 
Sbjct: 60  WLLIITVFLRSYKFAISLCTSYLCVSFLKTIFPSQNGHDGSTDVQQRARRSNRRRQEGI- 118

Query: 62  SICMHTKKRVSSFPGNKIGLKDVITLWRHVETKVRAKIRKRKVTTKINHHDKINGKRKTA 121
                           KI L+D+ TLWR VETKVRAKI K KVTTK+N HDKINGKRKTA
Sbjct: 119 ----------------KIVLEDIFTLWRQVETKVRAKICKMKVTTKVNRHDKINGKRKTA 162

Query: 122 KNQ------------------------------------KMFQRVQELWRRAEDYHKRKI 145
           K                                      +MFQR Q L RRAEDY++ KI
Sbjct: 163 KEHLRKLSMKEREHGEKERQVSEAEENGKLDMKEIHTYMEMFQRAQALRRRAEDYYRCKI 222

Query: 146 PPSARKPLCNWVSLLVFLAFGHSLPGQDMDTFFSLQLCAQALQREMAERRAAYKPHSPIP 205
            PSARKPLCN VSLLVFLAFGHSLPGQDMDTFFSL+LCAQALQREMAER+AAYK HSPIP
Sbjct: 223 TPSARKPLCNRVSLLVFLAFGHSLPGQDMDTFFSLRLCAQALQREMAERKAAYKHHSPIP 282

Query: 206 VGNRVAQKHLHPHPVGP 222
           VGNRVAQKHLHPHPVGP
Sbjct: 283 VGNRVAQKHLHPHPVGP 299


>gi|239745416 PREDICTED: similar to GPS, PLAT and transmembrane
           domain-containing protein FLJ00285 [Homo sapiens]
          Length = 317

 Score =  276 bits (705), Expect = 1e-74
 Identities = 154/257 (59%), Positives = 170/257 (66%), Gaps = 56/257 (21%)

Query: 5   WMLFWLLFGLLLEFISHQC---ICMSLLKTILWSRNGHDGSTDVQQRAWRSNRCRQKGLR 61
           W+L   +F    +F    C   +C+S LKTI  S+NGHDGSTDVQQRA RSNR RQ+G+ 
Sbjct: 60  WLLIITVFLRSYKFAISLCTSYLCVSFLKTIFPSQNGHDGSTDVQQRARRSNRRRQEGI- 118

Query: 62  SICMHTKKRVSSFPGNKIGLKDVITLWRHVETKVRAKIRKRKVTTKINHHDKINGKRKTA 121
                           KI L+D+ TLWR VETKVRAKI K KVTTK+N HDKINGKRKTA
Sbjct: 119 ----------------KIVLEDIFTLWRQVETKVRAKICKMKVTTKVNRHDKINGKRKTA 162

Query: 122 KNQ------------------------------------KMFQRVQELWRRAEDYHKRKI 145
           K                                      +MFQR Q L RRAEDY++ KI
Sbjct: 163 KEHLRKLSMKEREHGEKERQVSEAEENGKLDMKEIHTYMEMFQRAQALRRRAEDYYRCKI 222

Query: 146 PPSARKPLCNWVSLLVFLAFGHSLPGQDMDTFFSLQLCAQALQREMAERRAAYKPHSPIP 205
            PSARKPLCN VSLLVFLAFGHSLPGQDMDTFFSL+LCAQALQREMAER+AAYK HSPIP
Sbjct: 223 TPSARKPLCNRVSLLVFLAFGHSLPGQDMDTFFSLRLCAQALQREMAERKAAYKHHSPIP 282

Query: 206 VGNRVAQKHLHPHPVGP 222
           VGNRVAQKHLHPHPVGP
Sbjct: 283 VGNRVAQKHLHPHPVGP 299


>gi|239745482 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 449

 Score =  251 bits (640), Expect = 5e-67
 Identities = 121/137 (88%), Positives = 125/137 (91%)

Query: 23  CICMSLLKTILWSRNGHDGSTDVQQRAWRSNRCRQKGLRSICMHTKKRVSSFPGNKIGLK 82
           C+C+S LKTI WSRNGHDGS DVQQRAWRSNR RQKGLRSICMHTKKRVSSF GNKIGLK
Sbjct: 116 CLCVSFLKTIFWSRNGHDGSMDVQQRAWRSNRSRQKGLRSICMHTKKRVSSFRGNKIGLK 175

Query: 83  DVITLWRHVETKVRAKIRKRKVTTKINHHDKINGKRKTAKNQKMFQRVQELWRRAEDYHK 142
           DVITL RHVETKVRAKIRKRKVTTKIN HDKINGKRKTA+ QKMFQR QEL RRAEDYHK
Sbjct: 176 DVITLRRHVETKVRAKIRKRKVTTKINRHDKINGKRKTARKQKMFQRAQELRRRAEDYHK 235

Query: 143 RKIPPSARKPLCNWVSL 159
            KIPPSARKPLCNWV +
Sbjct: 236 CKIPPSARKPLCNWVRM 252


>gi|209529739 hypothetical protein LOC100132247 [Homo sapiens]
          Length = 1133

 Score =  244 bits (624), Expect = 3e-65
 Identities = 120/134 (89%), Positives = 124/134 (92%)

Query: 26  MSLLKTILWSRNGHDGSTDVQQRAWRSNRCRQKGLRSICMHTKKRVSSFPGNKIGLKDVI 85
           +SLLKTI WSRNGHDGSTDVQQRAWRSNR RQ+GLRSICMHTKKRVSSF GNKIGLKDVI
Sbjct: 84  VSLLKTIFWSRNGHDGSTDVQQRAWRSNRRRQEGLRSICMHTKKRVSSFRGNKIGLKDVI 143

Query: 86  TLWRHVETKVRAKIRKRKVTTKINHHDKINGKRKTAKNQKMFQRVQELWRRAEDYHKRKI 145
           TL RHVETKVRAKIRKRKVTTKINHHDKINGKRKTA+ QKMFQR QEL RRAEDYHK KI
Sbjct: 144 TLRRHVETKVRAKIRKRKVTTKINHHDKINGKRKTARKQKMFQRAQELRRRAEDYHKCKI 203

Query: 146 PPSARKPLCNWVSL 159
           PPSARK LCNWV +
Sbjct: 204 PPSARKALCNWVRM 217


>gi|157074225 nuclear pore complex interacting protein-like 3 [Homo
           sapiens]
          Length = 678

 Score =  244 bits (624), Expect = 3e-65
 Identities = 120/134 (89%), Positives = 124/134 (92%)

Query: 26  MSLLKTILWSRNGHDGSTDVQQRAWRSNRCRQKGLRSICMHTKKRVSSFPGNKIGLKDVI 85
           +SLLKTI WSRNGHDGSTDVQQRAWRSNR RQ+GLRSICMHTKKRVSSF GNKIGLKDVI
Sbjct: 84  VSLLKTIFWSRNGHDGSTDVQQRAWRSNRRRQEGLRSICMHTKKRVSSFRGNKIGLKDVI 143

Query: 86  TLWRHVETKVRAKIRKRKVTTKINHHDKINGKRKTAKNQKMFQRVQELWRRAEDYHKRKI 145
           TL RHVETKVRAKIRKRKVTTKINHHDKINGKRKTA+ QKMFQR QEL RRAEDYHK KI
Sbjct: 144 TLRRHVETKVRAKIRKRKVTTKINHHDKINGKRKTARKQKMFQRAQELRRRAEDYHKCKI 203

Query: 146 PPSARKPLCNWVSL 159
           PPSARK LCNWV +
Sbjct: 204 PPSARKALCNWVRM 217


>gi|239745501 PREDICTED: similar to acyl-CoA synthetase medium-chain
           family member 2 [Homo sapiens]
          Length = 1122

 Score =  241 bits (616), Expect = 3e-64
 Identities = 119/134 (88%), Positives = 123/134 (91%)

Query: 26  MSLLKTILWSRNGHDGSTDVQQRAWRSNRCRQKGLRSICMHTKKRVSSFPGNKIGLKDVI 85
           +SLLKTI WSRNGHDGSTDVQQRAWRSNR RQ+GLRSICMHTKKRVSSF GNKIGLKDVI
Sbjct: 84  VSLLKTIFWSRNGHDGSTDVQQRAWRSNRRRQEGLRSICMHTKKRVSSFRGNKIGLKDVI 143

Query: 86  TLWRHVETKVRAKIRKRKVTTKINHHDKINGKRKTAKNQKMFQRVQELWRRAEDYHKRKI 145
           TL RHVETKVRAKIRKRKVTTKIN HDKINGKRKTA+ QKMFQR QEL RRAEDYHK KI
Sbjct: 144 TLRRHVETKVRAKIRKRKVTTKINRHDKINGKRKTARKQKMFQRAQELRRRAEDYHKCKI 203

Query: 146 PPSARKPLCNWVSL 159
           PPSARK LCNWV +
Sbjct: 204 PPSARKALCNWVRM 217


>gi|169212906 PREDICTED: NPIP-like protein ENSP00000283050 isoform 3
           [Homo sapiens]
          Length = 363

 Score =  206 bits (523), Expect = 2e-53
 Identities = 111/170 (65%), Positives = 114/170 (67%), Gaps = 53/170 (31%)

Query: 26  MSLLKTILWSRNGHDGSTDVQQRAWRSNRCRQKGLRSICMHTKKRVSSFPGNKIGLKDVI 85
           MSLLKTILWSRNGHDGSTDVQQRAWRSNRCRQ+G                 NKIGLKDVI
Sbjct: 65  MSLLKTILWSRNGHDGSTDVQQRAWRSNRCRQEG-----------------NKIGLKDVI 107

Query: 86  TLWRHVETKVRAKIRKRKVTTKINHHDKINGKRKTAKN---------------------- 123
           TLWRHVETKVRAKIRKRKVTTKINHHDKINGKRKTAKN                      
Sbjct: 108 TLWRHVETKVRAKIRKRKVTTKINHHDKINGKRKTAKNHIRKLSMKECEHAEKERQVSEA 167

Query: 124 --------------QKMFQRVQELWRRAEDYHKRKIPPSARKPLCNWVSL 159
                         +KMFQR QEL RRAEDYHKRKIPPSARKPLCNWV +
Sbjct: 168 EENGKLDMKEIHTYKKMFQRAQELRRRAEDYHKRKIPPSARKPLCNWVRM 217


>gi|239745475 PREDICTED: similar to NPIP-like protein
           ENSP00000283050 isoform 1 [Homo sapiens]
          Length = 385

 Score =  182 bits (463), Expect = 2e-46
 Identities = 103/172 (59%), Positives = 107/172 (62%), Gaps = 53/172 (30%)

Query: 24  ICMSLLKTILWSRNGHDGSTDVQQRAWRSNRCRQKGLRSICMHTKKRVSSFPGNKIGLKD 83
           I +S LKTI WSRNGHDGS DVQQRAWRSNR RQKG                 NKIGLKD
Sbjct: 34  ISVSFLKTIFWSRNGHDGSMDVQQRAWRSNRSRQKG-----------------NKIGLKD 76

Query: 84  VITLWRHVETKVRAKIRKRKVTTKINHHDKINGKRKTAKN-------------------- 123
           VITL RHVETKVRAKIRKRKVTTKIN HDKINGKRKTA+                     
Sbjct: 77  VITLRRHVETKVRAKIRKRKVTTKINRHDKINGKRKTARKHIRKLSMKECEHAEKERQVS 136

Query: 124 ----------------QKMFQRVQELWRRAEDYHKRKIPPSARKPLCNWVSL 159
                           +KMFQR QEL RRAEDYHK KIPPSARKPLCNWV +
Sbjct: 137 EAEENGKLDMKEIHTYKKMFQRAQELRRRAEDYHKCKIPPSARKPLCNWVRM 188


>gi|239745469 PREDICTED: nuclear pore complex interacting
           protein-like 1 [Homo sapiens]
          Length = 371

 Score =  181 bits (460), Expect = 3e-46
 Identities = 102/170 (60%), Positives = 106/170 (62%), Gaps = 53/170 (31%)

Query: 26  MSLLKTILWSRNGHDGSTDVQQRAWRSNRCRQKGLRSICMHTKKRVSSFPGNKIGLKDVI 85
           +S LKTI WSRNGHDGS DVQQRAWRSNR RQKG                 NKIGLKDVI
Sbjct: 22  VSFLKTIFWSRNGHDGSMDVQQRAWRSNRSRQKG-----------------NKIGLKDVI 64

Query: 86  TLWRHVETKVRAKIRKRKVTTKINHHDKINGKRKTAKN---------------------- 123
           TL RHVETKVRAKIRKRKVTTKIN HDKINGKRKTA+                       
Sbjct: 65  TLRRHVETKVRAKIRKRKVTTKINRHDKINGKRKTARKHIRKLSMKECEHAEKERQVSEA 124

Query: 124 --------------QKMFQRVQELWRRAEDYHKRKIPPSARKPLCNWVSL 159
                         +KMFQR QEL RRAEDYHK KIPPSARKPLCNWV +
Sbjct: 125 EENGKLDMKEIHTYKKMFQRAQELRRRAEDYHKCKIPPSARKPLCNWVRM 174


>gi|239745414 PREDICTED: NPIP-like protein 2 isoform 2 [Homo
           sapiens]
          Length = 380

 Score =  164 bits (416), Expect = 4e-41
 Identities = 98/168 (58%), Positives = 101/168 (60%), Gaps = 51/168 (30%)

Query: 26  MSLLKTILWSRNGHDGSTDVQQRAWRSNRCRQKGLRSICMHTKKRVSSFPGNKIGLKDVI 85
           +S LKTI  S NGHD STDVQQRA RSNR RQ+G                 NKIGLKDVI
Sbjct: 65  LSFLKTIFQSENGHDVSTDVQQRARRSNRRRQEG-----------------NKIGLKDVI 107

Query: 86  TLWRHVETKVRAKIRKRKVTTKINHHDKINGKRKTAKNQ--------------------- 124
           TL RHVETK RAKIRK KVTTKINHHDKINGKRKTAK Q                     
Sbjct: 108 TLRRHVETKGRAKIRKMKVTTKINHHDKINGKRKTAKKQKLSVKECEHAEKERQVSEAEE 167

Query: 125 -------------KMFQRVQELWRRAEDYHKRKIPPSARKPLCNWVSL 159
                        KMFQR QEL RRAEDYHK KIPPSARK LCNWV +
Sbjct: 168 NGKLDMKEIHTYMKMFQRAQELRRRAEDYHKCKIPPSARKALCNWVRM 215


>gi|148596994 nuclear pore complex interacting protein [Homo
           sapiens]
          Length = 350

 Score =  152 bits (383), Expect = 3e-37
 Identities = 93/194 (47%), Positives = 108/194 (55%), Gaps = 56/194 (28%)

Query: 5   WMLFWLLFGLLLEFISHQC---ICMSLLKTILWSRNGHDGSTDVQQRAWRSNRCRQKGLR 61
           W+L   +F    +F    C   +C+S LKTI  S+NGHDGSTDVQQRA RSNR RQ+G+ 
Sbjct: 41  WLLIITVFLRSYKFAISLCTSYLCVSFLKTIFPSQNGHDGSTDVQQRARRSNRRRQEGI- 99

Query: 62  SICMHTKKRVSSFPGNKIGLKDVITLWRHVETKVRAKIRKRKVTTKINHHDKINGKRKTA 121
                           KI L+D+ TLWR VETKVRAKIRK KVTTK+N HDKINGKRKTA
Sbjct: 100 ----------------KIVLEDIFTLWRQVETKVRAKIRKMKVTTKVNRHDKINGKRKTA 143

Query: 122 KN------------------------------------QKMFQRVQELWRRAEDYHKRKI 145
           K                                      +MFQR Q L RRAEDY++ KI
Sbjct: 144 KEHLRKLSMKEREHGEKERQVSEAEENGKLDMKEIHTYMEMFQRAQALRRRAEDYYRCKI 203

Query: 146 PPSARKPLCNWVSL 159
            PSARKPLCN V +
Sbjct: 204 TPSARKPLCNRVRM 217


>gi|193290184 hypothetical protein LOC339047 [Homo sapiens]
          Length = 369

 Score =  149 bits (375), Expect = 2e-36
 Identities = 92/194 (47%), Positives = 107/194 (55%), Gaps = 56/194 (28%)

Query: 5   WMLFWLLFGLLLEFISHQC---ICMSLLKTILWSRNGHDGSTDVQQRAWRSNRCRQKGLR 61
           W+L   +F    +F    C   +C+S LKTI  S+NGHDGSTDVQQRA RSN  RQ+G+ 
Sbjct: 41  WLLIITVFLRSYKFAISLCTSYLCVSFLKTIFPSQNGHDGSTDVQQRARRSNCRRQEGI- 99

Query: 62  SICMHTKKRVSSFPGNKIGLKDVITLWRHVETKVRAKIRKRKVTTKINHHDKINGKRKTA 121
                           KI L+D+ TLWR VETKVRAKIRK KVTTK+N HDKINGKRKTA
Sbjct: 100 ----------------KIVLEDIFTLWRQVETKVRAKIRKMKVTTKVNRHDKINGKRKTA 143

Query: 122 KN------------------------------------QKMFQRVQELWRRAEDYHKRKI 145
           K                                      +MFQR Q L RRAEDY++ KI
Sbjct: 144 KEHLRKLSMKEREHGEKERQVSEAEENGKLDMKEIHTYMEMFQRAQALRRRAEDYYRCKI 203

Query: 146 PPSARKPLCNWVSL 159
            PSARKPLCN V +
Sbjct: 204 TPSARKPLCNRVRM 217


>gi|73747844 ligase III, DNA, ATP-dependent isoform beta precursor
           [Homo sapiens]
          Length = 949

 Score = 30.4 bits (67), Expect = 1.3
 Identities = 22/99 (22%), Positives = 44/99 (44%), Gaps = 6/99 (6%)

Query: 54  RCRQKGLRSICMHTKKRVSSFPGNKIGLKDVITLWRHVETKVRAKIRKRKVTTKINHHDK 113
           +C++K ++ +C   K   + F  +   +K+    W H++       R R  T KI    +
Sbjct: 107 KCKEKIVKGVCRIGKVVPNPFSESGGDMKE----WYHIKCMFEKLERARATTKKIEDLTE 162

Query: 114 INGKRKTAKNQK--MFQRVQELWRRAEDYHKRKIPPSAR 150
           + G  +   N+K  + Q + +L  +A    K+K    A+
Sbjct: 163 LEGWEELEDNEKEQITQHIADLSSKAAGTPKKKAVVQAK 201


>gi|73747829 ligase III, DNA, ATP-dependent isoform alpha precursor
           [Homo sapiens]
          Length = 1009

 Score = 30.4 bits (67), Expect = 1.3
 Identities = 22/99 (22%), Positives = 44/99 (44%), Gaps = 6/99 (6%)

Query: 54  RCRQKGLRSICMHTKKRVSSFPGNKIGLKDVITLWRHVETKVRAKIRKRKVTTKINHHDK 113
           +C++K ++ +C   K   + F  +   +K+    W H++       R R  T KI    +
Sbjct: 107 KCKEKIVKGVCRIGKVVPNPFSESGGDMKE----WYHIKCMFEKLERARATTKKIEDLTE 162

Query: 114 INGKRKTAKNQK--MFQRVQELWRRAEDYHKRKIPPSAR 150
           + G  +   N+K  + Q + +L  +A    K+K    A+
Sbjct: 163 LEGWEELEDNEKEQITQHIADLSSKAAGTPKKKAVVQAK 201


>gi|221316618 dystonin isoform 2 [Homo sapiens]
          Length = 5675

 Score = 28.9 bits (63), Expect = 3.7
 Identities = 22/99 (22%), Positives = 46/99 (46%), Gaps = 3/99 (3%)

Query: 7   LFWLLFGLLLEFISHQCICMSLLKTILWSRNGHDGSTDVQQRAWRSNRCRQKGLRSICMH 66
           L  LL G +   +   C    L K     ++   G +  +    RS+  R +G R+   H
Sbjct: 21  LLLLLLGTIATIVFFCCWHRKLQKGRHPMKSVFSGRSRSRDAVLRSHHFRSEGFRASPRH 80

Query: 67  TKKRVSSFPGNKI-GLKDVITLWRHVETKVRAKIRKRKV 104
            ++RV++    ++  +K V+ +  H +++    +RKR++
Sbjct: 81  LRRRVAAAAAARLEEVKPVVEV--HHQSEQETSVRKRRI 117


>gi|7661696 hypothetical protein LOC26017 [Homo sapiens]
          Length = 112

 Score = 28.1 bits (61), Expect = 6.3
 Identities = 16/58 (27%), Positives = 30/58 (51%), Gaps = 6/58 (10%)

Query: 94  KVRAKIRKRKVTTKINHHDKINGKRKTAKNQKMFQRVQE------LWRRAEDYHKRKI 145
           K +AK+ +   T+K N  +K  G  K    Q  F+++QE      + ++A   HK+++
Sbjct: 32  KDKAKLLEAMGTSKKNEEEKRRGLDKRTPAQAAFEKMQEKRQMERILKKASKTHKQRV 89


>gi|104526627 triadin [Homo sapiens]
          Length = 729

 Score = 28.1 bits (61), Expect = 6.3
 Identities = 11/36 (30%), Positives = 20/36 (55%)

Query: 90  HVETKVRAKIRKRKVTTKINHHDKINGKRKTAKNQK 125
           H +   + +  +RK+ TK+ H +K  GK K  + +K
Sbjct: 144 HKDKTEKQEKPERKIQTKVTHKEKEKGKEKVREKEK 179


>gi|115529449 upstream binding transcription factor, RNA polymerase
           I isoform b [Homo sapiens]
          Length = 727

 Score = 27.7 bits (60), Expect = 8.3
 Identities = 13/52 (25%), Positives = 27/52 (51%), Gaps = 1/52 (1%)

Query: 87  LWRHVETKVRAKIRKRKVTTKINHHDKINGKR-KTAKNQKMFQRVQELWRRA 137
           +W  +  K +AK + R+   K     K  G+R +  K  +  +R +E+W+++
Sbjct: 407 MWNDLSEKKKAKYKAREAALKAQSERKPGGEREERGKLPESPKRAEEIWQQS 458


>gi|115529451 upstream binding transcription factor, RNA polymerase
           I isoform b [Homo sapiens]
          Length = 727

 Score = 27.7 bits (60), Expect = 8.3
 Identities = 13/52 (25%), Positives = 27/52 (51%), Gaps = 1/52 (1%)

Query: 87  LWRHVETKVRAKIRKRKVTTKINHHDKINGKR-KTAKNQKMFQRVQELWRRA 137
           +W  +  K +AK + R+   K     K  G+R +  K  +  +R +E+W+++
Sbjct: 407 MWNDLSEKKKAKYKAREAALKAQSERKPGGEREERGKLPESPKRAEEIWQQS 458


>gi|7657671 upstream binding transcription factor, RNA polymerase I
           isoform a [Homo sapiens]
          Length = 764

 Score = 27.7 bits (60), Expect = 8.3
 Identities = 13/52 (25%), Positives = 27/52 (51%), Gaps = 1/52 (1%)

Query: 87  LWRHVETKVRAKIRKRKVTTKINHHDKINGKR-KTAKNQKMFQRVQELWRRA 137
           +W  +  K +AK + R+   K     K  G+R +  K  +  +R +E+W+++
Sbjct: 444 MWNDLSEKKKAKYKAREAALKAQSERKPGGEREERGKLPESPKRAEEIWQQS 495


>gi|50083279 centrosome protein 4 [Homo sapiens]
          Length = 1140

 Score = 27.7 bits (60), Expect = 8.3
 Identities = 16/50 (32%), Positives = 25/50 (50%), Gaps = 1/50 (2%)

Query: 91  VETKVRAKIRKRKVTTKINHHDKINGKRKTAKNQKMFQRVQELWRRAEDY 140
           V+ K   K R  K  T+++  + +    K  +NQ +  R Q L  RAED+
Sbjct: 845 VQEKEEMKSRVHKYITEVSRWESLMAA-KEKENQDLLDRFQMLHNRAEDW 893


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.326    0.137    0.447 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,310,069
Number of Sequences: 37866
Number of extensions: 391807
Number of successful extensions: 1405
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 1365
Number of HSP's gapped (non-prelim): 31
length of query: 224
length of database: 18,247,518
effective HSP length: 98
effective length of query: 126
effective length of database: 14,536,650
effective search space: 1831617900
effective search space used: 1831617900
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 60 (27.7 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.