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Search of human proteins with 239745943
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239745943 PREDICTED: similar to hCG1647636 [Homo sapiens]
(73 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239756947 PREDICTED: similar to hCG1647636 [Homo sapiens] 165 6e-42
gi|239751438 PREDICTED: similar to hCG1647636 [Homo sapiens] 165 6e-42
gi|239745943 PREDICTED: similar to hCG1647636 [Homo sapiens] 165 6e-42
gi|7706499 DNA directed RNA polymerase III polypeptide K [Homo s... 107 2e-24
gi|9994187 platelet-derived growth factor C precursor [Homo sapi... 29 0.69
gi|17978466 cyclin T1 [Homo sapiens] 28 1.5
gi|17978469 cyclin T2 isoform b [Homo sapiens] 27 2.6
gi|4502629 cyclin T2 isoform a [Homo sapiens] 27 2.6
gi|42475941 zinc finger protein 261 [Homo sapiens] 27 3.4
gi|4827067 zinc finger protein 261 [Homo sapiens] 27 3.4
gi|169171432 PREDICTED: similar to hCG2014367 [Homo sapiens] 27 4.5
gi|239753062 PREDICTED: hypothetical protein [Homo sapiens] 27 4.5
gi|169171899 PREDICTED: similar to hCG2014367 [Homo sapiens] 27 4.5
gi|169171130 PREDICTED: hypothetical protein LOC100130600 [Homo ... 27 4.5
gi|239740980 PREDICTED: hypothetical protein XP_002344293 [Homo ... 27 4.5
gi|239509024 PREDICTED: similar to hCG2014367 [Homo sapiens] 27 4.5
gi|169171742 PREDICTED: hypothetical protein LOC442676 [Homo sap... 26 5.9
gi|169172340 PREDICTED: hypothetical protein LOC442676 [Homo sap... 26 5.9
gi|169170016 PREDICTED: hypothetical protein LOC442676 [Homo sap... 26 5.9
gi|239508816 PREDICTED: hypothetical protein LOC442676 [Homo sap... 26 5.9
gi|108773804 Fraser syndrome 1 [Homo sapiens] 26 5.9
gi|169790973 parkin isoform 3 [Homo sapiens] 26 7.7
gi|169790971 parkin isoform 2 [Homo sapiens] 26 7.7
gi|169790969 parkin isoform 1 [Homo sapiens] 26 7.7
gi|126012573 low density lipoprotein-related protein 2 [Homo sap... 26 7.7
>gi|239756947 PREDICTED: similar to hCG1647636 [Homo sapiens]
Length = 73
Score = 165 bits (418), Expect = 6e-42
Identities = 73/73 (100%), Positives = 73/73 (100%)
Query: 1 MMLLFYPGCRDGLIVEEGQRCRCHSLACNTCLCVHFTHKVTNWKYSKLKEVDDGLGGAAA 60
MMLLFYPGCRDGLIVEEGQRCRCHSLACNTCLCVHFTHKVTNWKYSKLKEVDDGLGGAAA
Sbjct: 1 MMLLFYPGCRDGLIVEEGQRCRCHSLACNTCLCVHFTHKVTNWKYSKLKEVDDGLGGAAA 60
Query: 61 WEDVDSTAEPCPQ 73
WEDVDSTAEPCPQ
Sbjct: 61 WEDVDSTAEPCPQ 73
>gi|239751438 PREDICTED: similar to hCG1647636 [Homo sapiens]
Length = 73
Score = 165 bits (418), Expect = 6e-42
Identities = 73/73 (100%), Positives = 73/73 (100%)
Query: 1 MMLLFYPGCRDGLIVEEGQRCRCHSLACNTCLCVHFTHKVTNWKYSKLKEVDDGLGGAAA 60
MMLLFYPGCRDGLIVEEGQRCRCHSLACNTCLCVHFTHKVTNWKYSKLKEVDDGLGGAAA
Sbjct: 1 MMLLFYPGCRDGLIVEEGQRCRCHSLACNTCLCVHFTHKVTNWKYSKLKEVDDGLGGAAA 60
Query: 61 WEDVDSTAEPCPQ 73
WEDVDSTAEPCPQ
Sbjct: 61 WEDVDSTAEPCPQ 73
>gi|239745943 PREDICTED: similar to hCG1647636 [Homo sapiens]
Length = 73
Score = 165 bits (418), Expect = 6e-42
Identities = 73/73 (100%), Positives = 73/73 (100%)
Query: 1 MMLLFYPGCRDGLIVEEGQRCRCHSLACNTCLCVHFTHKVTNWKYSKLKEVDDGLGGAAA 60
MMLLFYPGCRDGLIVEEGQRCRCHSLACNTCLCVHFTHKVTNWKYSKLKEVDDGLGGAAA
Sbjct: 1 MMLLFYPGCRDGLIVEEGQRCRCHSLACNTCLCVHFTHKVTNWKYSKLKEVDDGLGGAAA 60
Query: 61 WEDVDSTAEPCPQ 73
WEDVDSTAEPCPQ
Sbjct: 61 WEDVDSTAEPCPQ 73
>gi|7706499 DNA directed RNA polymerase III polypeptide K [Homo
sapiens]
Length = 108
Score = 107 bits (267), Expect = 2e-24
Identities = 55/73 (75%), Positives = 58/73 (79%), Gaps = 3/73 (4%)
Query: 2 MLLFYPGCRDGLIVEEGQRCRCHSLACNTCLCVH-FTHKVTNWKYSKLKEVDDGLGGAAA 60
MLLF PGC +GLIVEEGQRC H ACNTC VH T KVTN KY KLKEVDD LGGAAA
Sbjct: 1 MLLFCPGCGNGLIVEEGQRC--HRFACNTCPYVHNITRKVTNRKYPKLKEVDDVLGGAAA 58
Query: 61 WEDVDSTAEPCPQ 73
WE+VDSTAE CP+
Sbjct: 59 WENVDSTAESCPK 71
>gi|9994187 platelet-derived growth factor C precursor [Homo
sapiens]
Length = 345
Score = 29.3 bits (64), Expect = 0.69
Identities = 18/48 (37%), Positives = 25/48 (52%), Gaps = 5/48 (10%)
Query: 4 LFYPGCRDGLIVEEGQRCRCHSLACNTCLCVHFTHKVTNWKYSKLKEV 51
+F+PGC L+ G C C CN C CV KVT KY ++ ++
Sbjct: 269 IFWPGCL--LVKRCGGNCACCLHNCNECQCV--PSKVTK-KYHEVLQL 311
>gi|17978466 cyclin T1 [Homo sapiens]
Length = 726
Score = 28.1 bits (61), Expect = 1.5
Identities = 13/37 (35%), Positives = 18/37 (48%), Gaps = 6/37 (16%)
Query: 31 CLCVHFTHKVTNWKYSKLKEVDDGLGGAAAWEDVDST 67
C+C+H K +NW E+ G WE VD+T
Sbjct: 198 CVCIHLACKWSNW------EIPVSTDGKHWWEYVDAT 228
>gi|17978469 cyclin T2 isoform b [Homo sapiens]
Length = 730
Score = 27.3 bits (59), Expect = 2.6
Identities = 13/37 (35%), Positives = 17/37 (45%), Gaps = 6/37 (16%)
Query: 31 CLCVHFTHKVTNWKYSKLKEVDDGLGGAAAWEDVDST 67
C+C+H K +NW E+ G WE VD T
Sbjct: 197 CVCIHLACKWSNW------EIPVSTDGKHWWEYVDPT 227
>gi|4502629 cyclin T2 isoform a [Homo sapiens]
Length = 663
Score = 27.3 bits (59), Expect = 2.6
Identities = 13/37 (35%), Positives = 17/37 (45%), Gaps = 6/37 (16%)
Query: 31 CLCVHFTHKVTNWKYSKLKEVDDGLGGAAAWEDVDST 67
C+C+H K +NW E+ G WE VD T
Sbjct: 197 CVCIHLACKWSNW------EIPVSTDGKHWWEYVDPT 227
>gi|42475941 zinc finger protein 261 [Homo sapiens]
Length = 1370
Score = 26.9 bits (58), Expect = 3.4
Identities = 12/23 (52%), Positives = 13/23 (56%)
Query: 50 EVDDGLGGAAAWEDVDSTAEPCP 72
EVD G G AW+ D T EP P
Sbjct: 94 EVDHGPEGTLAWDAGDQTLEPGP 116
>gi|4827067 zinc finger protein 261 [Homo sapiens]
Length = 1370
Score = 26.9 bits (58), Expect = 3.4
Identities = 12/23 (52%), Positives = 13/23 (56%)
Query: 50 EVDDGLGGAAAWEDVDSTAEPCP 72
EVD G G AW+ D T EP P
Sbjct: 94 EVDHGPEGTLAWDAGDQTLEPGP 116
>gi|169171432 PREDICTED: similar to hCG2014367 [Homo sapiens]
Length = 594
Score = 26.6 bits (57), Expect = 4.5
Identities = 12/37 (32%), Positives = 18/37 (48%), Gaps = 2/37 (5%)
Query: 20 RCRCHSLACNTCLCVHFTHKVTNWKYSKLKEVDDGLG 56
R H++ C T HF+ + W Y E ++GLG
Sbjct: 514 RAPVHTMNCGTFRAFHFSENSSCWGYK--MECEEGLG 548
>gi|239753062 PREDICTED: hypothetical protein [Homo sapiens]
Length = 811
Score = 26.6 bits (57), Expect = 4.5
Identities = 12/37 (32%), Positives = 18/37 (48%), Gaps = 2/37 (5%)
Query: 20 RCRCHSLACNTCLCVHFTHKVTNWKYSKLKEVDDGLG 56
R H++ C T HF+ + W Y E ++GLG
Sbjct: 731 RAPVHTMNCGTFRAFHFSENSSCWGYK--MECEEGLG 765
>gi|169171899 PREDICTED: similar to hCG2014367 [Homo sapiens]
Length = 594
Score = 26.6 bits (57), Expect = 4.5
Identities = 12/37 (32%), Positives = 18/37 (48%), Gaps = 2/37 (5%)
Query: 20 RCRCHSLACNTCLCVHFTHKVTNWKYSKLKEVDDGLG 56
R H++ C T HF+ + W Y E ++GLG
Sbjct: 514 RAPVHTMNCGTFRAFHFSENSSCWGYK--MECEEGLG 548
>gi|169171130 PREDICTED: hypothetical protein LOC100130600 [Homo
sapiens]
Length = 594
Score = 26.6 bits (57), Expect = 4.5
Identities = 12/37 (32%), Positives = 18/37 (48%), Gaps = 2/37 (5%)
Query: 20 RCRCHSLACNTCLCVHFTHKVTNWKYSKLKEVDDGLG 56
R H++ C T HF+ + W Y E ++GLG
Sbjct: 514 RAPVHTMNCGTFRAFHFSENSSCWGYK--MECEEGLG 548
>gi|239740980 PREDICTED: hypothetical protein XP_002344293 [Homo
sapiens]
Length = 616
Score = 26.6 bits (57), Expect = 4.5
Identities = 12/37 (32%), Positives = 18/37 (48%), Gaps = 2/37 (5%)
Query: 20 RCRCHSLACNTCLCVHFTHKVTNWKYSKLKEVDDGLG 56
R H++ C T HF+ + W Y E ++GLG
Sbjct: 536 RAPVHTMNCGTFRAFHFSENSSCWGYK--MECEEGLG 570
>gi|239509024 PREDICTED: similar to hCG2014367 [Homo sapiens]
Length = 594
Score = 26.6 bits (57), Expect = 4.5
Identities = 12/37 (32%), Positives = 18/37 (48%), Gaps = 2/37 (5%)
Query: 20 RCRCHSLACNTCLCVHFTHKVTNWKYSKLKEVDDGLG 56
R H++ C T HF+ + W Y E ++GLG
Sbjct: 514 RAPVHTMNCGTFRAFHFSENSSCWGYK--MECEEGLG 548
>gi|169171742 PREDICTED: hypothetical protein LOC442676 [Homo
sapiens]
Length = 679
Score = 26.2 bits (56), Expect = 5.9
Identities = 12/37 (32%), Positives = 17/37 (45%), Gaps = 2/37 (5%)
Query: 20 RCRCHSLACNTCLCVHFTHKVTNWKYSKLKEVDDGLG 56
R H++ C T HF + W Y E ++GLG
Sbjct: 604 RAPVHTMKCGTFRAFHFLENSSCWGYK--MECEEGLG 638
>gi|169172340 PREDICTED: hypothetical protein LOC442676 [Homo
sapiens]
Length = 679
Score = 26.2 bits (56), Expect = 5.9
Identities = 12/37 (32%), Positives = 17/37 (45%), Gaps = 2/37 (5%)
Query: 20 RCRCHSLACNTCLCVHFTHKVTNWKYSKLKEVDDGLG 56
R H++ C T HF + W Y E ++GLG
Sbjct: 604 RAPVHTMKCGTFRAFHFLENSSCWGYK--MECEEGLG 638
>gi|169170016 PREDICTED: hypothetical protein LOC442676 [Homo
sapiens]
Length = 679
Score = 26.2 bits (56), Expect = 5.9
Identities = 12/37 (32%), Positives = 17/37 (45%), Gaps = 2/37 (5%)
Query: 20 RCRCHSLACNTCLCVHFTHKVTNWKYSKLKEVDDGLG 56
R H++ C T HF + W Y E ++GLG
Sbjct: 604 RAPVHTMKCGTFRAFHFLENSSCWGYK--MECEEGLG 638
>gi|239508816 PREDICTED: hypothetical protein LOC442676 [Homo
sapiens]
Length = 679
Score = 26.2 bits (56), Expect = 5.9
Identities = 12/37 (32%), Positives = 17/37 (45%), Gaps = 2/37 (5%)
Query: 20 RCRCHSLACNTCLCVHFTHKVTNWKYSKLKEVDDGLG 56
R H++ C T HF + W Y E ++GLG
Sbjct: 604 RAPVHTMKCGTFRAFHFLENSSCWGYK--MECEEGLG 638
>gi|108773804 Fraser syndrome 1 [Homo sapiens]
Length = 4011
Score = 26.2 bits (56), Expect = 5.9
Identities = 11/25 (44%), Positives = 13/25 (52%), Gaps = 1/25 (4%)
Query: 7 PGCRDGLIVEEGQRCRCHSLACNTC 31
P C G E G +CHS +C TC
Sbjct: 844 PDCPSGYYAERGACKKCHS-SCRTC 867
>gi|169790973 parkin isoform 3 [Homo sapiens]
Length = 316
Score = 25.8 bits (55), Expect = 7.7
Identities = 23/86 (26%), Positives = 31/86 (36%), Gaps = 19/86 (22%)
Query: 7 PGCRDGLIVEEGQR-CRC---HSLACNTCLCVHFTHKVTNWKYSKLKE----------VD 52
PGC GL+ E QR C + L C C + S + E VD
Sbjct: 186 PGCGAGLLPEPDQRKVTCEGGNGLGCGFAFCRECKEAYHEGECSAVFEASGTTTQAYRVD 245
Query: 53 DGLGGAAAW-----EDVDSTAEPCPQ 73
+ A W E + T +PCP+
Sbjct: 246 ERAAEQARWEAASKETIKKTTKPCPR 271
>gi|169790971 parkin isoform 2 [Homo sapiens]
Length = 437
Score = 25.8 bits (55), Expect = 7.7
Identities = 23/86 (26%), Positives = 31/86 (36%), Gaps = 19/86 (22%)
Query: 7 PGCRDGLIVEEGQR-CRC---HSLACNTCLCVHFTHKVTNWKYSKLKE----------VD 52
PGC GL+ E QR C + L C C + S + E VD
Sbjct: 307 PGCGAGLLPEPDQRKVTCEGGNGLGCGFAFCRECKEAYHEGECSAVFEASGTTTQAYRVD 366
Query: 53 DGLGGAAAW-----EDVDSTAEPCPQ 73
+ A W E + T +PCP+
Sbjct: 367 ERAAEQARWEAASKETIKKTTKPCPR 392
>gi|169790969 parkin isoform 1 [Homo sapiens]
Length = 465
Score = 25.8 bits (55), Expect = 7.7
Identities = 23/86 (26%), Positives = 31/86 (36%), Gaps = 19/86 (22%)
Query: 7 PGCRDGLIVEEGQR-CRC---HSLACNTCLCVHFTHKVTNWKYSKLKE----------VD 52
PGC GL+ E QR C + L C C + S + E VD
Sbjct: 335 PGCGAGLLPEPDQRKVTCEGGNGLGCGFAFCRECKEAYHEGECSAVFEASGTTTQAYRVD 394
Query: 53 DGLGGAAAW-----EDVDSTAEPCPQ 73
+ A W E + T +PCP+
Sbjct: 395 ERAAEQARWEAASKETIKKTTKPCPR 420
>gi|126012573 low density lipoprotein-related protein 2 [Homo sapiens]
Length = 4655
Score = 25.8 bits (55), Expect = 7.7
Identities = 13/45 (28%), Positives = 18/45 (40%), Gaps = 5/45 (11%)
Query: 10 RDGLIVEEGQRCRCHSLACNTCLCVHFTHKVTNWKYSKLKEVDDG 54
R IV+ G+RC S C+ C+ WK + DG
Sbjct: 2689 RKHCIVDNGERCGASSFTCSNGRCIS-----EEWKCDNDNDCGDG 2728
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.324 0.138 0.486
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,451,105
Number of Sequences: 37866
Number of extensions: 123228
Number of successful extensions: 370
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 19
Number of HSP's that attempted gapping in prelim test: 359
Number of HSP's gapped (non-prelim): 28
length of query: 73
length of database: 18,247,518
effective HSP length: 46
effective length of query: 27
effective length of database: 16,505,682
effective search space: 445653414
effective search space used: 445653414
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.