Search of human proteins with 239745928

Search of human proteins with 239745928

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|239745928 PREDICTED: hypothetical protein XP_002343618 [Homo
sapiens]
         (299 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|239745928 PREDICTED: hypothetical protein XP_002343618 [Homo ...   595   e-170
gi|239756904 PREDICTED: similar to SNRNP200 protein [Homo sapiens]    492   e-139
gi|40217847 activating signal cointegrator 1 complex subunit 3-l...   437   e-123
gi|169218225 PREDICTED: similar to U5 snRNP-specific 200kD prote...   410   e-115
gi|76880486 activating signal cointegrator 1 complex subunit 3 i...   105   5e-23
gi|6005872 SEC63-like protein [Homo sapiens]                           59   4e-09
gi|189083802 myosin VIIA isoform 2 [Homo sapiens]                      32   0.89 
gi|189083798 myosin VIIA isoform 1 [Homo sapiens]                      32   0.89 
gi|66933016 inosine monophosphate dehydrogenase 2 [Homo sapiens]       31   1.5  
gi|46593000 GRIP1 associated protein 1 isoform 2 [Homo sapiens]        30   2.6  
gi|112382372 guanylate binding protein 3 [Homo sapiens]                30   3.4  
gi|160948599 integrator complex subunit 1 [Homo sapiens]               29   4.4  
gi|23097308 spectrin repeat containing, nuclear envelope 1 isofo...    28   7.5  
gi|154277116 spectrin repeat containing, nuclear envelope 1 isof...    28   7.5  
gi|24586688 ankyrin repeat and SOCS box-containing protein 16 [H...    28   7.5  
gi|46519147 ankyrin repeat and KH domain containing 1 isoform 1 ...    28   7.5  
gi|37620163 ANKHD1-EIF4EBP3 protein [Homo sapiens]                     28   7.5  

>gi|239745928 PREDICTED: hypothetical protein XP_002343618 [Homo
           sapiens]
          Length = 299

 Score =  595 bits (1534), Expect = e-170
 Identities = 299/299 (100%), Positives = 299/299 (100%)

Query: 1   MSRFTSPSPFLKLKTFGFSIQEGTRVGERKRGARKAEKVIHGSKQNALCLRGPRTKVRGL 60
           MSRFTSPSPFLKLKTFGFSIQEGTRVGERKRGARKAEKVIHGSKQNALCLRGPRTKVRGL
Sbjct: 1   MSRFTSPSPFLKLKTFGFSIQEGTRVGERKRGARKAEKVIHGSKQNALCLRGPRTKVRGL 60

Query: 61  IEIISNAAGYENIPIQHHEENFLRQLAQKVPDKLNNPKFNDPHIKTNLLLQAHLSRMQLS 120
           IEIISNAAGYENIPIQHHEENFLRQLAQKVPDKLNNPKFNDPHIKTNLLLQAHLSRMQLS
Sbjct: 61  IEIISNAAGYENIPIQHHEENFLRQLAQKVPDKLNNPKFNDPHIKTNLLLQAHLSRMQLS 120

Query: 121 AELQSDTEEILSKAVRLVQACVDVLSSNGWLSSALAAMELAQMVTQAMWSKDSYLKQLPH 180
           AELQSDTEEILSKAVRLVQACVDVLSSNGWLSSALAAMELAQMVTQAMWSKDSYLKQLPH
Sbjct: 121 AELQSDTEEILSKAVRLVQACVDVLSSNGWLSSALAAMELAQMVTQAMWSKDSYLKQLPH 180

Query: 181 FISEHIKRCTDKGVKSVFDIMEMEDEERNTILQLTDSQITDKREEGWWVVIGDTKSNSLI 240
           FISEHIKRCTDKGVKSVFDIMEMEDEERNTILQLTDSQITDKREEGWWVVIGDTKSNSLI
Sbjct: 181 FISEHIKRCTDKGVKSVFDIMEMEDEERNTILQLTDSQITDKREEGWWVVIGDTKSNSLI 240

Query: 241 SIKRLILQQKAKVKLDFVAPATGAHNYTLYFMSDAYMGCDQEYKFSMDVKEAETDSDSD 299
           SIKRLILQQKAKVKLDFVAPATGAHNYTLYFMSDAYMGCDQEYKFSMDVKEAETDSDSD
Sbjct: 241 SIKRLILQQKAKVKLDFVAPATGAHNYTLYFMSDAYMGCDQEYKFSMDVKEAETDSDSD 299


>gi|239756904 PREDICTED: similar to SNRNP200 protein [Homo sapiens]
          Length = 302

 Score =  492 bits (1267), Expect = e-139
 Identities = 264/336 (78%), Positives = 264/336 (78%), Gaps = 71/336 (21%)

Query: 1   MSRFTSPSPFLKLKTFGFSIQEGTRVGERKRGARKAEKVIHGSKQNALCLRGPRTKVRGL 60
           MSRFTSPSPFLKLKTFGFSIQEGTRVGERKRGA                           
Sbjct: 1   MSRFTSPSPFLKLKTFGFSIQEGTRVGERKRGA--------------------------- 33

Query: 61  IEIISNAAGYENIPIQHHEENFLRQLAQKVPDKLNNPKFNDPHIKTNLLLQAHLSRMQLS 120
                   GYENIPIQHHEENFLRQLAQKVPDKLNNPKFNDPHIKTNLLLQAHLSRMQLS
Sbjct: 34  -------TGYENIPIQHHEENFLRQLAQKVPDKLNNPKFNDPHIKTNLLLQAHLSRMQLS 86

Query: 121 AELQSDTEEILSKAVRLVQACVDVLSSNGWLSSALAAMELAQMVTQAMWSKDSYLKQLPH 180
           AELQSDTEEILSKAVRLVQACVDVLSSNGWLSSALAAMELAQMVTQAMWSKDSYLKQLPH
Sbjct: 87  AELQSDTEEILSKAVRLVQACVDVLSSNGWLSSALAAMELAQMVTQAMWSKDSYLKQLPH 146

Query: 181 FISEHIKRCTDKGVKSVFDIMEMEDEERNTILQLTDSQITD------------------- 221
           FISEHIKRCTDKGVKSVFDIMEMEDEERNTILQLTDSQITD                   
Sbjct: 147 FISEHIKRCTDKGVKSVFDIMEMEDEERNTILQLTDSQITDEVVDKDSIRSGGPAVVLVQ 206

Query: 222 ------------------KREEGWWVVIGDTKSNSLISIKRLILQQKAKVKLDFVAPATG 263
                             KREEGWWVVIGDTKSNSLISIKRLILQQKAKVKLDFVAPATG
Sbjct: 207 LEREEEVTGPVIAPLFPQKREEGWWVVIGDTKSNSLISIKRLILQQKAKVKLDFVAPATG 266

Query: 264 AHNYTLYFMSDAYMGCDQEYKFSMDVKEAETDSDSD 299
           AHNYTLYFMSDAYMGCDQEYKFSMDVKEAETDSDSD
Sbjct: 267 AHNYTLYFMSDAYMGCDQEYKFSMDVKEAETDSDSD 302


>gi|40217847 activating signal cointegrator 1 complex subunit 3-like 1
            [Homo sapiens]
          Length = 2136

 Score =  437 bits (1124), Expect = e-123
 Identities = 228/298 (76%), Positives = 237/298 (79%), Gaps = 52/298 (17%)

Query: 54   RTKVRGLIEIISNAAGYENIPIQHHEENFLRQLAQKVPDKLNNPKFNDPHIKTNLLLQAH 113
            +TKVRGLIEIISNAA YENIPI+HHE+N LRQLAQKVP KLNNPKFNDPH+KTNLLLQAH
Sbjct: 1839 KTKVRGLIEIISNAAEYENIPIRHHEDNLLRQLAQKVPHKLNNPKFNDPHVKTNLLLQAH 1898

Query: 114  LSRMQLSAELQSDTEEILSKAVRLVQACVDVLSSNGWLSSALAAMELAQMVTQAMWSKDS 173
            LSRMQLSAELQSDTEEILSKA+RL+QACVDVLSSNGWLS ALAAMELAQMVTQAMWSKDS
Sbjct: 1899 LSRMQLSAELQSDTEEILSKAIRLIQACVDVLSSNGWLSPALAAMELAQMVTQAMWSKDS 1958

Query: 174  YLKQLPHFISEHIKRCTDKGVKSVFDIMEMEDEERNTILQLTDSQITD------------ 221
            YLKQLPHF SEHIKRCTDKGV+SVFDIMEMEDEERN +LQLTDSQI D            
Sbjct: 1959 YLKQLPHFTSEHIKRCTDKGVESVFDIMEMEDEERNALLQLTDSQIADVARFCNRYPNIE 2018

Query: 222  ----------------------------------------KREEGWWVVIGDTKSNSLIS 241
                                                    KREEGWWVVIGD KSNSLIS
Sbjct: 2019 LSYEVVDKDSIRSGGPVVVLVQLEREEEVTGPVIAPLFPQKREEGWWVVIGDAKSNSLIS 2078

Query: 242  IKRLILQQKAKVKLDFVAPATGAHNYTLYFMSDAYMGCDQEYKFSMDVKEAETDSDSD 299
            IKRL LQQKAKVKLDFVAPATGAHNYTLYFMSDAYMGCDQEYKFS+DVKEAETDSDSD
Sbjct: 2079 IKRLTLQQKAKVKLDFVAPATGAHNYTLYFMSDAYMGCDQEYKFSVDVKEAETDSDSD 2136



 Score = 62.0 bits (149), Expect = 6e-10
 Identities = 40/156 (25%), Positives = 76/156 (48%), Gaps = 6/156 (3%)

Query: 60   LIEIISNAAGYENIPIQHHEENFLRQLAQKVPDKLNNPKFNDPHIKTNLLLQAHLSRMQL 119
            L  + S ++ ++NI ++  E+  L++L ++VP  +      +P  K N+LLQA +S+++L
Sbjct: 1014 LFRVFSLSSEFKNITVREEEKLELQKLLERVPIPVKE-SIEEPSAKINVLLQAFISQLKL 1072

Query: 120  SA-ELQSDTEEILSKAVRLVQACVDVLSSNGWLSSALAAMELAQMVTQAMWSKDSYLKQL 178
                L +D   +   A RL++A  +++ + GW       + L +M+ + MW     L+Q 
Sbjct: 1073 EGFALMADMVYVTQSAGRLMRAIFEIVLNRGWAQLTDKTLNLCKMIDKRMWQSMCPLRQF 1132

Query: 179  PHFISEHIKRCTDKGVKSVFDIMEMEDEERNTILQL 214
                 E +K+   K     F    + D   N I +L
Sbjct: 1133 RKLPEEVVKKIEKKN----FPFERLYDLNHNEIGEL 1164


>gi|169218225 PREDICTED: similar to U5 snRNP-specific 200kD protein,
            partial [Homo sapiens]
          Length = 1700

 Score =  410 bits (1053), Expect = e-115
 Identities = 217/298 (72%), Positives = 230/298 (77%), Gaps = 52/298 (17%)

Query: 54   RTKVRGLIEIISNAAGYENIPIQHHEENFLRQLAQKVPDKLNNPKFNDPHIKTNLLLQAH 113
            +TKVRGLIEIISNAA YENIPI+HHE+N LRQLAQKVP KLNNPKFNDPH+KTNLLLQAH
Sbjct: 1403 KTKVRGLIEIISNAAEYENIPIRHHEDNLLRQLAQKVPHKLNNPKFNDPHVKTNLLLQAH 1462

Query: 114  LSRMQLSAELQSDTEEILSKAVRLVQACVDVLSSNGWLSSALAAMELAQMVTQAMWSKDS 173
            LSRMQLSAELQSDTEEILSKA+RL+QACVDVLSSNGWLS ALAAMELAQMVTQAMWS+DS
Sbjct: 1463 LSRMQLSAELQSDTEEILSKAIRLIQACVDVLSSNGWLSPALAAMELAQMVTQAMWSEDS 1522

Query: 174  YLKQLPHFISEHIKRCTDKGVKSVFDIMEMEDEERNTILQLTDSQITD------------ 221
            YL++LP F S   KRCTDKGV+SVFDIMEMEDEERN +LQLTDSQI D            
Sbjct: 1523 YLRRLPPFPSGLFKRCTDKGVESVFDIMEMEDEERNALLQLTDSQIADVARFCNRYPNIE 1582

Query: 222  ----------------------------------------KREEGWWVVIGDTKSNSLIS 241
                                                    KREEGWWVVIGD KSNSLIS
Sbjct: 1583 LSYEVVDKDSIRSGGPVVVLVQLEREEEVTGPVIAPLFPQKREEGWWVVIGDAKSNSLIS 1642

Query: 242  IKRLILQQKAKVKLDFVAPATGAHNYTLYFMSDAYMGCDQEYKFSMDVKEAETDSDSD 299
            IKRL LQQKAKVKLDFVAPATG  + TLYFMSDAYMGCDQEYKFS+DVKEAETDSDSD
Sbjct: 1643 IKRLTLQQKAKVKLDFVAPATGGRHNTLYFMSDAYMGCDQEYKFSVDVKEAETDSDSD 1700



 Score = 62.0 bits (149), Expect = 6e-10
 Identities = 40/156 (25%), Positives = 76/156 (48%), Gaps = 6/156 (3%)

Query: 60  LIEIISNAAGYENIPIQHHEENFLRQLAQKVPDKLNNPKFNDPHIKTNLLLQAHLSRMQL 119
           L  + S ++ ++NI ++  E+  L++L ++VP  +      +P  K N+LLQA +S+++L
Sbjct: 578 LFRVFSLSSEFKNITVREEEKLELQKLLERVPIPVKE-SIEEPSAKINVLLQAFISQLKL 636

Query: 120 SA-ELQSDTEEILSKAVRLVQACVDVLSSNGWLSSALAAMELAQMVTQAMWSKDSYLKQL 178
               L +D   +   A RL++A  +++ + GW       + L +M+ + MW     L+Q 
Sbjct: 637 EGFALMADMVYVTQSAGRLMRAIFEIVLNRGWAQLTDKTLNLCKMIDKRMWQSMCPLRQF 696

Query: 179 PHFISEHIKRCTDKGVKSVFDIMEMEDEERNTILQL 214
                E +K+   K     F    + D   N I +L
Sbjct: 697 RKLPEEVVKKIEKKN----FPFERLYDLNHNEIGEL 728


>gi|76880486 activating signal cointegrator 1 complex subunit 3
            isoform a [Homo sapiens]
          Length = 2202

 Score =  105 bits (262), Expect = 5e-23
 Identities = 53/135 (39%), Positives = 83/135 (61%), Gaps = 1/135 (0%)

Query: 53   PRTKVRGLIEIISNAAGYENIPIQHHEENFLRQLAQKVPDKLNNPKFNDPHIKTNLLLQA 112
            P      L+ I+S+A  Y ++P++H+E++   +LA+ +P + N   F+ PH K +LLLQA
Sbjct: 1838 PECSTEELLSILSDAEEYTDLPVRHNEDHMNSELAKCLPIESNPHSFDSPHTKAHLLLQA 1897

Query: 113  HLSRMQLSA-ELQSDTEEILSKAVRLVQACVDVLSSNGWLSSALAAMELAQMVTQAMWSK 171
            HLSR  L   +  +DT+ +L +A+R+ QA +DV ++ GWL + L    L QMV Q  W K
Sbjct: 1898 HLSRAMLPCPDYDTDTKTVLDQALRVCQAMLDVAANQGWLVTVLNITNLIQMVIQGRWLK 1957

Query: 172  DSYLKQLPHFISEHI 186
            DS L  LP+  + H+
Sbjct: 1958 DSSLLTLPNIENHHL 1972



 Score = 58.5 bits (140), Expect = 7e-09
 Identities = 27/72 (37%), Positives = 45/72 (62%), Gaps = 2/72 (2%)

Query: 223  REEGWWVVIGDTKSNSLISIKRL-ILQQKAKVKLDFVAPAT-GAHNYTLYFMSDAYMGCD 280
            ++EGW++++G+     LI++KR+  ++      L F  P   G + YTLYFMSD Y+G D
Sbjct: 2111 KDEGWFLILGEVDKRELIALKRVGYIRNHHVASLSFYTPEIPGRYIYTLYFMSDCYLGLD 2170

Query: 281  QEYKFSMDVKEA 292
            Q+Y   ++V +A
Sbjct: 2171 QQYDIYLNVTQA 2182



 Score = 48.1 bits (113), Expect = 9e-06
 Identities = 35/154 (22%), Positives = 71/154 (46%), Gaps = 2/154 (1%)

Query: 60   LIEIISNAAGYENIPIQHHEENFLRQLAQKVPDKLNNPKFNDPHIKTNLLLQAHLSRMQL 119
            +  I+S A  ++ I ++  E   L  L     +        + + K N+LLQ ++SR ++
Sbjct: 1011 IFAIVSKAEEFDQIKVREEEIEELDTLLSNFCELSTPGGVENSYGKINILLQTYISRGEM 1070

Query: 120  -SAELQSDTEEILSKAVRLVQACVDVLSSNGWLSSALAAMELAQMVTQAMWSKDSYLKQL 178
             S  L SD+  +   A R+V+A  ++     W +     + L++++ + +W   S L+Q 
Sbjct: 1071 DSFSLISDSAYVAQNAARIVRALFEIALRKRWPTMTYRLLNLSKVIDKRLWGWASPLRQF 1130

Query: 179  PHFISEHIKRCTDKGVKSVFDIMEMEDEERNTIL 212
               +  HI    ++   +V  + +M  +E   IL
Sbjct: 1131 -SILPPHILTRLEEKKLTVDKLKDMRKDEIGHIL 1163


>gi|6005872 SEC63-like protein [Homo sapiens]
          Length = 760

 Score = 59.3 bits (142), Expect = 4e-09
 Identities = 42/158 (26%), Positives = 80/158 (50%), Gaps = 22/158 (13%)

Query: 93  KLNNPKFNDPH-IKTNLLLQAHLSRMQLSAELQSDTEEILSKAVRLVQACVDVLSS---- 147
           K N P    P+ +K  +LL +HL+RM++   L+ D + +L K   L+Q  V+V+      
Sbjct: 287 KKNEPPLTCPYSLKARVLLLSHLARMKIPETLEEDQQFMLKKCPALLQEMVNVICQLIVM 346

Query: 148 ----------NGWLSSALAAMELAQMVTQAMWSKDSYLKQLPHFISEHIKRCTDK---GV 194
                        L+S    M+L+QM  Q +    S L QLPH   ++++R ++     +
Sbjct: 347 ARNREEREFRAPTLASLENCMKLSQMAVQGLQQFKSPLLQLPHIEEDNLRRVSNHKKYKI 406

Query: 195 KSVFDIMEMEDEERNTILQLTDSQITDKREEGWWVVIG 232
           K++ D++ +++ +R+T+L      + D++ E    V+G
Sbjct: 407 KTIQDLVSLKESDRHTLLHF----LEDEKYEEVMAVLG 440



 Score = 54.3 bits (129), Expect = 1e-07
 Identities = 28/76 (36%), Positives = 46/76 (60%), Gaps = 3/76 (3%)

Query: 221 DKREEGWWVVIGDTKSNSLISIKRLI--LQQKAKVKLDFVAPAT-GAHNYTLYFMSDAYM 277
           ++++E WW+ I D K  +LIS+   +  L+   +V+L F AP   G + YT++  SD+YM
Sbjct: 645 EEKQEWWWLYIADRKEQTLISMPYHVCTLKDTEEVELKFPAPGKPGNYQYTVFLRSDSYM 704

Query: 278 GCDQEYKFSMDVKEAE 293
           G DQ     ++V EA+
Sbjct: 705 GLDQIKPLKLEVHEAK 720


>gi|189083802 myosin VIIA isoform 2 [Homo sapiens]
          Length = 2175

 Score = 31.6 bits (70), Expect = 0.89
 Identities = 29/105 (27%), Positives = 44/105 (41%), Gaps = 5/105 (4%)

Query: 151  LSSALAAMELAQMVTQAMWSKDSYLKQLPHFISEHIKRCTDKGVKSVFDIMEMEDEERNT 210
            L   L + EL+Q    A  +   Y+   P   +  +   TD+  +       ++DE    
Sbjct: 1719 LKKLLGSEELSQEACLAFIAVLKYMGDYPSKRTRSVNELTDQIFEGPLKAEPLKDEAYVQ 1778

Query: 211  IL-QLTDSQITDKREEGW---WVVIG-DTKSNSLISIKRLILQQK 250
            IL QLTD+ I    E GW   W+  G    SN L+   +  LQ +
Sbjct: 1779 ILKQLTDNHIRYSEERGWELLWLCTGLFPPSNILLPHVQRFLQSR 1823


>gi|189083798 myosin VIIA isoform 1 [Homo sapiens]
          Length = 2215

 Score = 31.6 bits (70), Expect = 0.89
 Identities = 29/105 (27%), Positives = 44/105 (41%), Gaps = 5/105 (4%)

Query: 151  LSSALAAMELAQMVTQAMWSKDSYLKQLPHFISEHIKRCTDKGVKSVFDIMEMEDEERNT 210
            L   L + EL+Q    A  +   Y+   P   +  +   TD+  +       ++DE    
Sbjct: 1757 LKKLLGSEELSQEACLAFIAVLKYMGDYPSKRTRSVNELTDQIFEGPLKAEPLKDEAYVQ 1816

Query: 211  IL-QLTDSQITDKREEGW---WVVIG-DTKSNSLISIKRLILQQK 250
            IL QLTD+ I    E GW   W+  G    SN L+   +  LQ +
Sbjct: 1817 ILKQLTDNHIRYSEERGWELLWLCTGLFPPSNILLPHVQRFLQSR 1861


>gi|66933016 inosine monophosphate dehydrogenase 2 [Homo sapiens]
          Length = 514

 Score = 30.8 bits (68), Expect = 1.5
 Identities = 33/114 (28%), Positives = 48/114 (42%), Gaps = 10/114 (8%)

Query: 100 NDPHIKTNLLLQAHLSRMQ--LSAELQSDTEEILSKAVRL--------VQACVDVLSSNG 149
           N  HI   L L A    M   L+A  ++  E   S  +RL        + A    LSS  
Sbjct: 369 NVGHIAKALALGASTVMMGSLLAATTEAPGEYFFSDGIRLKKYRGMGSLDAMDKHLSSQN 428

Query: 150 WLSSALAAMELAQMVTQAMWSKDSYLKQLPHFISEHIKRCTDKGVKSVFDIMEM 203
              S    +++AQ V+ A+  K S  K +P+ I+     C D G KS+  +  M
Sbjct: 429 RYFSEADKIKVAQGVSGAVQDKGSIHKFVPYLIAGIQHSCQDIGAKSLTQVRAM 482


>gi|46593000 GRIP1 associated protein 1 isoform 2 [Homo sapiens]
          Length = 625

 Score = 30.0 bits (66), Expect = 2.6
 Identities = 29/107 (27%), Positives = 49/107 (45%), Gaps = 5/107 (4%)

Query: 79  EENFLRQLAQKVPDKLNNPKFNDPHIKTNLLLQAHLSRMQLSAELQSDTEEILSKAVRLV 138
           EE F R  AQ +  + NN + +D   K  + L +   ++    +  S  ++ LSK+ +  
Sbjct: 7   EEEFQRMQAQLLELRTNNYQLSDELRKNGVELTSLRQKVAYLDKEFSKAQKALSKSKKAQ 66

Query: 139 QACVDVLSSNGWLSSALAAME----LAQMVTQAMWSKDSYLKQLPHF 181
           +  V +LS N  L + L + E    L      A +SK+ Y K+   F
Sbjct: 67  EVEV-LLSENEMLQAKLHSQEEDFRLQNSTLMAEFSKERYGKEAGKF 112


>gi|112382372 guanylate binding protein 3 [Homo sapiens]
          Length = 595

 Score = 29.6 bits (65), Expect = 3.4
 Identities = 27/129 (20%), Positives = 58/129 (44%), Gaps = 14/129 (10%)

Query: 88  QKVPDKLNNPKFNDPH--IKTNLLLQAHLSRMQLSAELQSDTEEILSKAVRLVQA-CVDV 144
           QK+ D L    + +P   I+   +LQ +L   +   +    T++IL++  + ++  CV  
Sbjct: 436 QKLQD-LEKKYYEEPRKGIQAEEILQTYLKSKESVTDAILQTDQILTEKEKEIEVECV-- 492

Query: 145 LSSNGWLSSALAAMELAQMVTQAMWSKDSYLKQLPHFISEHIKRCTDKGVKSVFDIMEME 204
                    A +A   A+MV +        +++      EH+K+ T+K  +    ++E +
Sbjct: 493 --------KAESAQASAKMVEEMQIKYQQMMEEKEKSYQEHVKQLTEKMERERAQLLEEQ 544

Query: 205 DEERNTILQ 213
           ++   + LQ
Sbjct: 545 EKTLTSKLQ 553


>gi|160948599 integrator complex subunit 1 [Homo sapiens]
          Length = 2190

 Score = 29.3 bits (64), Expect = 4.4
 Identities = 51/232 (21%), Positives = 91/232 (39%), Gaps = 48/232 (20%)

Query: 21  QEGTRVGERKRGARKAEKVIHGSKQNALCLRGPRTKV-RGLIEIISNAAGYENIPIQHHE 79
           QEG  +   +  A   E+ +    ++ L  R P   V R L+ ++++  GY+ +      
Sbjct: 310 QEGQLMPRYEELAESVEEYVLDMLRDQLNRRQPIDNVSRNLLRLLTSTCGYKEV------ 363

Query: 80  ENFLRQLA-QKVPDKLNNPKFNDP--------------HIKTNLLLQAHLSRMQLSA--- 121
               R LA QK+   L NPK   P              H   ++ + +HL +++L     
Sbjct: 364 ----RLLAVQKLEMWLQNPKLTRPAQDLLMSVCMNCNTHGSEDMDVISHLIKIRLKPKVL 419

Query: 122 ---------ELQSDTEEILSKAVRLV----------QACVDVLSSNGWLSSALAAMELAQ 162
                    EL S  ++ L   ++LV             + VL +    SS LA   LA 
Sbjct: 420 LNHFMLCIRELLSAHKDNLGTTIKLVIFNELSSARNPNNMQVLYTALQHSSELAPKFLAM 479

Query: 163 MVTQAMWSKDSYLKQLPHFISEHIKRCTDKGVKSVFDIMEMEDEERNTILQL 214
           +    + +KD YL+     + E IK+   +     F +  M++ +    L++
Sbjct: 480 VFQDLLTNKDDYLRASRALLREIIKQTKHEINFQAFCLGLMQERKEPQYLEM 531


>gi|23097308 spectrin repeat containing, nuclear envelope 1 isoform
           2 [Homo sapiens]
          Length = 8749

 Score = 28.5 bits (62), Expect = 7.5
 Identities = 32/132 (24%), Positives = 60/132 (45%), Gaps = 23/132 (17%)

Query: 75  IQHHEENFLRQLAQKVPDKLNNPKFNDPHIKTNLLLQAHLSRMQLSAELQSDTEEI---- 130
           I++     + QL Q     + N KF + +  T  +L+   + M + A+   +  E     
Sbjct: 535 IKYGRRESVEQLLQNYVSFIENSKFFEQYEVTYQILK-QTAEMYVKADGSVEEAENVMKF 593

Query: 131 ----------LSKAVRLVQACVDVLSSNGW------LSSALAAMELAQ-MVTQAMWSKDS 173
                     LS  VR V++ ++ + SN W      ++S  A +E A+ M+ Q+  +K  
Sbjct: 594 MNETTAQWRNLSVEVRSVRSMLEEVISN-WDRYGNTVASLQAWLEDAEKMLNQSENAKKD 652

Query: 174 YLKQLPHFISEH 185
           + + LPH+I +H
Sbjct: 653 FFRNLPHWIQQH 664


>gi|154277116 spectrin repeat containing, nuclear envelope 1 isoform
           1 [Homo sapiens]
          Length = 8797

 Score = 28.5 bits (62), Expect = 7.5
 Identities = 32/132 (24%), Positives = 60/132 (45%), Gaps = 23/132 (17%)

Query: 75  IQHHEENFLRQLAQKVPDKLNNPKFNDPHIKTNLLLQAHLSRMQLSAELQSDTEEI---- 130
           I++     + QL Q     + N KF + +  T  +L+   + M + A+   +  E     
Sbjct: 528 IKYGRRESVEQLLQNYVSFIENSKFFEQYEVTYQILK-QTAEMYVKADGSVEEAENVMKF 586

Query: 131 ----------LSKAVRLVQACVDVLSSNGW------LSSALAAMELAQ-MVTQAMWSKDS 173
                     LS  VR V++ ++ + SN W      ++S  A +E A+ M+ Q+  +K  
Sbjct: 587 MNETTAQWRNLSVEVRSVRSMLEEVISN-WDRYGNTVASLQAWLEDAEKMLNQSENAKKD 645

Query: 174 YLKQLPHFISEH 185
           + + LPH+I +H
Sbjct: 646 FFRNLPHWIQQH 657


>gi|24586688 ankyrin repeat and SOCS box-containing protein 16 [Homo
           sapiens]
          Length = 453

 Score = 28.5 bits (62), Expect = 7.5
 Identities = 11/39 (28%), Positives = 23/39 (58%)

Query: 204 EDEERNTILQLTDSQITDKREEGWWVVIGDTKSNSLISI 242
           ++E  N I++   +Q+    E+G+WV+   TK  + ++I
Sbjct: 79  DEEAANMIVETVSNQLAWSAEQGFWVLTPKTKQTAPLAI 117


>gi|46519147 ankyrin repeat and KH domain containing 1 isoform 1 [Homo
            sapiens]
          Length = 2542

 Score = 28.5 bits (62), Expect = 7.5
 Identities = 18/76 (23%), Positives = 32/76 (42%)

Query: 190  TDKGVKSVFDIMEMEDEERNTILQLTDSQITDKREEGWWVVIGDTKSNSLISIKRLILQQ 249
            T   + + +  + +     N  L LT  +   KREEGW  V+  +K  S+ +     +  
Sbjct: 1653 TPNSLSTSYKTVSLPLSSPNIKLNLTSPKRGQKREEGWKEVVRRSKKLSVPASVVSRIMG 1712

Query: 250  KAKVKLDFVAPATGAH 265
            +    +  +   TGAH
Sbjct: 1713 RGGCNITAIQDVTGAH 1728


>gi|37620163 ANKHD1-EIF4EBP3 protein [Homo sapiens]
          Length = 2617

 Score = 28.5 bits (62), Expect = 7.5
 Identities = 18/76 (23%), Positives = 32/76 (42%)

Query: 190  TDKGVKSVFDIMEMEDEERNTILQLTDSQITDKREEGWWVVIGDTKSNSLISIKRLILQQ 249
            T   + + +  + +     N  L LT  +   KREEGW  V+  +K  S+ +     +  
Sbjct: 1653 TPNSLSTSYKTVSLPLSSPNIKLNLTSPKRGQKREEGWKEVVRRSKKLSVPASVVSRIMG 1712

Query: 250  KAKVKLDFVAPATGAH 265
            +    +  +   TGAH
Sbjct: 1713 RGGCNITAIQDVTGAH 1728


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.317    0.131    0.373 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,022,096
Number of Sequences: 37866
Number of extensions: 385521
Number of successful extensions: 1067
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 1039
Number of HSP's gapped (non-prelim): 27
length of query: 299
length of database: 18,247,518
effective HSP length: 102
effective length of query: 197
effective length of database: 14,385,186
effective search space: 2833881642
effective search space used: 2833881642
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 61 (28.1 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.