Guide to the Human Genome
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Search of human proteins with 239745919

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|239745919 PREDICTED: hypothetical protein XP_002343617 [Homo
sapiens]
         (235 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|239751409 PREDICTED: hypothetical protein XP_002347840 [Homo ...   491   e-139
gi|239745919 PREDICTED: hypothetical protein XP_002343617 [Homo ...   491   e-139
gi|239756914 PREDICTED: hypothetical protein [Homo sapiens]           408   e-114
gi|148833504 interleukin 16 isoform 2 [Homo sapiens]                   37   0.019
gi|239749693 PREDICTED: similar to hCG1806822 [Homo sapiens]           34   0.12 
gi|148491070 CTP synthase [Homo sapiens]                               34   0.12 
gi|89363017 alpha 2 type V collagen preproprotein [Homo sapiens]       32   0.36 
gi|239749293 PREDICTED: hypothetical protein XP_002346984 [Homo ...    32   0.36 
gi|239743383 PREDICTED: hypothetical protein XP_002342846 [Homo ...    32   0.36 
gi|4507869 vasodilator-stimulated phosphoprotein [Homo sapiens]        32   0.47 
gi|29171711 melanoma antigen family B, 1 [Homo sapiens]                32   0.47 
gi|29171709 melanoma antigen family B, 1 [Homo sapiens]                32   0.47 
gi|29171707 melanoma antigen family B, 1 [Homo sapiens]                32   0.47 
gi|191252814 RIMS binding protein 3B [Homo sapiens]                    32   0.62 
gi|191252806 RIMS binding protein 3C [Homo sapiens]                    32   0.62 
gi|239757324 PREDICTED: hypothetical protein XP_002345241 [Homo ...    32   0.62 
gi|239751831 PREDICTED: hypothetical protein XP_002348009 [Homo ...    32   0.62 
gi|239746324 PREDICTED: hypothetical protein XP_002343730 [Homo ...    32   0.62 
gi|215820619 zinc finger protein 646 [Homo sapiens]                    31   0.81 
gi|224548936 hypothetical protein LOC100170229 [Homo sapiens]          31   1.1  
gi|170932471 hypothetical protein LOC79703 [Homo sapiens]              31   1.1  
gi|58218966 hypothetical protein LOC339201 [Homo sapiens]              31   1.1  
gi|23397666 transcriptional co-repressor Sin3A [Homo sapiens]          30   1.4  
gi|223941785 transcriptional co-repressor Sin3A [Homo sapiens]         30   1.4  
gi|223941782 transcriptional co-repressor Sin3A [Homo sapiens]         30   1.4  
gi|32479521 dishevelled 1 [Homo sapiens]                               30   1.4  
gi|19718731 bromodomain-containing protein 4 isoform long [Homo ...    30   1.4  
gi|153792195 DKFZP434H0735 protein [Homo sapiens]                      30   1.4  
gi|239754887 PREDICTED: hypothetical protein XP_002346152 [Homo ...    30   1.8  
gi|239749426 PREDICTED: hypothetical protein XP_002347042 [Homo ...    30   1.8  

>gi|239751409 PREDICTED: hypothetical protein XP_002347840 [Homo
           sapiens]
          Length = 235

 Score =  491 bits (1265), Expect = e-139
 Identities = 235/235 (100%), Positives = 235/235 (100%)

Query: 1   MAPHGVQALGPGGWLGKCRVLVWRNNSMPQSRGVALGPQLAATALSDKAQSAQYDPTQIC 60
           MAPHGVQALGPGGWLGKCRVLVWRNNSMPQSRGVALGPQLAATALSDKAQSAQYDPTQIC
Sbjct: 1   MAPHGVQALGPGGWLGKCRVLVWRNNSMPQSRGVALGPQLAATALSDKAQSAQYDPTQIC 60

Query: 61  QKLTFCLSHQRRKEKQRRRRPDPRKQHSNRCSCTHAPACCQSHSPEPAVLKTPQQGQARR 120
           QKLTFCLSHQRRKEKQRRRRPDPRKQHSNRCSCTHAPACCQSHSPEPAVLKTPQQGQARR
Sbjct: 61  QKLTFCLSHQRRKEKQRRRRPDPRKQHSNRCSCTHAPACCQSHSPEPAVLKTPQQGQARR 120

Query: 121 HPANPQGRPGASLGAGAISLRQRLEVHGEGLLFRLGRPLPVGPGQDVEHRPTEAGQQQAQ 180
           HPANPQGRPGASLGAGAISLRQRLEVHGEGLLFRLGRPLPVGPGQDVEHRPTEAGQQQAQ
Sbjct: 121 HPANPQGRPGASLGAGAISLRQRLEVHGEGLLFRLGRPLPVGPGQDVEHRPTEAGQQQAQ 180

Query: 181 HVGQDTLGLKCAILAPAGVEQQCLLQAQQGGAHGKEEDGSTKEDVLWAVAAPQGE 235
           HVGQDTLGLKCAILAPAGVEQQCLLQAQQGGAHGKEEDGSTKEDVLWAVAAPQGE
Sbjct: 181 HVGQDTLGLKCAILAPAGVEQQCLLQAQQGGAHGKEEDGSTKEDVLWAVAAPQGE 235


>gi|239745919 PREDICTED: hypothetical protein XP_002343617 [Homo
           sapiens]
          Length = 235

 Score =  491 bits (1265), Expect = e-139
 Identities = 235/235 (100%), Positives = 235/235 (100%)

Query: 1   MAPHGVQALGPGGWLGKCRVLVWRNNSMPQSRGVALGPQLAATALSDKAQSAQYDPTQIC 60
           MAPHGVQALGPGGWLGKCRVLVWRNNSMPQSRGVALGPQLAATALSDKAQSAQYDPTQIC
Sbjct: 1   MAPHGVQALGPGGWLGKCRVLVWRNNSMPQSRGVALGPQLAATALSDKAQSAQYDPTQIC 60

Query: 61  QKLTFCLSHQRRKEKQRRRRPDPRKQHSNRCSCTHAPACCQSHSPEPAVLKTPQQGQARR 120
           QKLTFCLSHQRRKEKQRRRRPDPRKQHSNRCSCTHAPACCQSHSPEPAVLKTPQQGQARR
Sbjct: 61  QKLTFCLSHQRRKEKQRRRRPDPRKQHSNRCSCTHAPACCQSHSPEPAVLKTPQQGQARR 120

Query: 121 HPANPQGRPGASLGAGAISLRQRLEVHGEGLLFRLGRPLPVGPGQDVEHRPTEAGQQQAQ 180
           HPANPQGRPGASLGAGAISLRQRLEVHGEGLLFRLGRPLPVGPGQDVEHRPTEAGQQQAQ
Sbjct: 121 HPANPQGRPGASLGAGAISLRQRLEVHGEGLLFRLGRPLPVGPGQDVEHRPTEAGQQQAQ 180

Query: 181 HVGQDTLGLKCAILAPAGVEQQCLLQAQQGGAHGKEEDGSTKEDVLWAVAAPQGE 235
           HVGQDTLGLKCAILAPAGVEQQCLLQAQQGGAHGKEEDGSTKEDVLWAVAAPQGE
Sbjct: 181 HVGQDTLGLKCAILAPAGVEQQCLLQAQQGGAHGKEEDGSTKEDVLWAVAAPQGE 235


>gi|239756914 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 241

 Score =  408 bits (1048), Expect = e-114
 Identities = 197/199 (98%), Positives = 197/199 (98%)

Query: 37  GPQLAATALSDKAQSAQYDPTQICQKLTFCLSHQRRKEKQRRRRPDPRKQHSNRCSCTHA 96
           G  LAATALSDKAQSAQYDPTQICQKLTFCLSHQRRKEKQRRRRPDPRKQHSNRCSCTHA
Sbjct: 43  GLLLAATALSDKAQSAQYDPTQICQKLTFCLSHQRRKEKQRRRRPDPRKQHSNRCSCTHA 102

Query: 97  PACCQSHSPEPAVLKTPQQGQARRHPANPQGRPGASLGAGAISLRQRLEVHGEGLLFRLG 156
           PACCQSHSPEPAVLKTPQQGQARRHPANPQGRPGASLGAGAISLRQRLEVHGEGLLFRLG
Sbjct: 103 PACCQSHSPEPAVLKTPQQGQARRHPANPQGRPGASLGAGAISLRQRLEVHGEGLLFRLG 162

Query: 157 RPLPVGPGQDVEHRPTEAGQQQAQHVGQDTLGLKCAILAPAGVEQQCLLQAQQGGAHGKE 216
           RPLPVGPGQDVEHRPTEAGQQQAQHVGQDTLGLKCAILAPAGVEQQCLLQAQQGGAHGKE
Sbjct: 163 RPLPVGPGQDVEHRPTEAGQQQAQHVGQDTLGLKCAILAPAGVEQQCLLQAQQGGAHGKE 222

Query: 217 EDGSTKEDVLWAVAAPQGE 235
           EDGSTKEDVLWAVAAPQGE
Sbjct: 223 EDGSTKEDVLWAVAAPQGE 241


>gi|148833504 interleukin 16 isoform 2 [Homo sapiens]
          Length = 1332

 Score = 36.6 bits (83), Expect = 0.019
 Identities = 22/77 (28%), Positives = 31/77 (40%), Gaps = 14/77 (18%)

Query: 72  RKEKQRRRRPDPRK--------------QHSNRCSCTHAPACCQSHSPEPAVLKTPQQGQ 117
           RK    + +P PRK              + ++ CS  H P  C   + E   L  PQ+  
Sbjct: 590 RKPMSSKPKPPPRKYFKSDSDPQKSLEERENSSCSSGHTPPTCGQEARELLPLLLPQEDT 649

Query: 118 ARRHPANPQGRPGASLG 134
           A R P+   G PG  +G
Sbjct: 650 AGRSPSASAGCPGPGIG 666


>gi|239749693 PREDICTED: similar to hCG1806822 [Homo sapiens]
          Length = 1180

 Score = 33.9 bits (76), Expect = 0.12
 Identities = 16/49 (32%), Positives = 22/49 (44%)

Query: 66  CLSHQRRKEKQRRRRPDPRKQHSNRCSCTHAPACCQSHSPEPAVLKTPQ 114
           C    +     RRR P+    HS   +  H+P     HSPE AV  +P+
Sbjct: 31  CCQMSKEVSLYRRRAPEAAVFHSPEAAVYHSPEATVYHSPEAAVYHSPE 79



 Score = 30.8 bits (68), Expect = 1.1
 Identities = 16/53 (30%), Positives = 24/53 (45%)

Query: 81  PDPRKQHSNRCSCTHAPACCQSHSPEPAVLKTPQQGQARRHPANPQGRPGASL 133
           P+    HS   +  H+P     HSPE AV ++P+    R   A     P A++
Sbjct: 110 PEAAVYHSPEAAVFHSPEAAVFHSPEAAVYRSPEAAVFRSPEAAVYRSPEAAV 162



 Score = 29.6 bits (65), Expect = 2.3
 Identities = 15/48 (31%), Positives = 21/48 (43%)

Query: 67  LSHQRRKEKQRRRRPDPRKQHSNRCSCTHAPACCQSHSPEPAVLKTPQ 114
           L  +R  E      P+    HS   +  H+P     HSPE AV  +P+
Sbjct: 40  LYRRRAPEAAVFHSPEAAVYHSPEATVYHSPEAAVYHSPEAAVFHSPE 87



 Score = 29.6 bits (65), Expect = 2.3
 Identities = 17/53 (32%), Positives = 22/53 (41%)

Query: 81  PDPRKQHSNRCSCTHAPACCQSHSPEPAVLKTPQQGQARRHPANPQGRPGASL 133
           P+    HS   S  H+P     HSPE AV  +P         A     PGA++
Sbjct: 851 PEAAVYHSPEASVFHSPEAAVYHSPEAAVFHSPGAAVFHSPGAAVFHSPGAAV 903



 Score = 29.3 bits (64), Expect = 3.1
 Identities = 29/110 (26%), Positives = 37/110 (33%), Gaps = 6/110 (5%)

Query: 71  RRKEKQRRRRPDPRKQHSNRCSCTHAPACCQSHSPEPAVLKTPQQGQARRHPANPQGRPG 130
           R  E    R P+     S   +  H P     HSPE AV  +P+        A     PG
Sbjct: 388 RSPEAAVYRSPEAAVYRSPEAAVFHCPEAAVYHSPEAAVYHSPEASVFHSPGAAVFHSPG 447

Query: 131 ASL----GAGAISLRQRLEVH--GEGLLFRLGRPLPVGPGQDVEHRPTEA 174
           A++    GA           H  G  +    G  +   PG  V H P  A
Sbjct: 448 AAVYHSPGAAVFHSPGAAVYHSPGAAVYHSPGAAVFHSPGAAVYHSPGAA 497



 Score = 28.9 bits (63), Expect = 4.0
 Identities = 12/34 (35%), Positives = 17/34 (50%)

Query: 81  PDPRKQHSNRCSCTHAPACCQSHSPEPAVLKTPQ 114
           P+    HS   +  H+P     HSPE AV  +P+
Sbjct: 94  PEAAVYHSPEAAVFHSPEAAVYHSPEAAVFHSPE 127



 Score = 28.9 bits (63), Expect = 4.0
 Identities = 16/53 (30%), Positives = 22/53 (41%)

Query: 81  PDPRKQHSNRCSCTHAPACCQSHSPEPAVLKTPQQGQARRHPANPQGRPGASL 133
           P+    HS   +  H+P     HSP  AV  +P     R   A     PGA++
Sbjct: 867 PEAAVYHSPEAAVFHSPGAAVFHSPGAAVFHSPGAAVYRSPGAAVYRSPGAAV 919



 Score = 28.5 bits (62), Expect = 5.2
 Identities = 12/34 (35%), Positives = 17/34 (50%)

Query: 81  PDPRKQHSNRCSCTHAPACCQSHSPEPAVLKTPQ 114
           P+    HS   +  H+P     HSPE AV  +P+
Sbjct: 62  PEATVYHSPEAAVYHSPEAAVFHSPEAAVYHSPE 95



 Score = 28.5 bits (62), Expect = 5.2
 Identities = 12/34 (35%), Positives = 17/34 (50%)

Query: 81  PDPRKQHSNRCSCTHAPACCQSHSPEPAVLKTPQ 114
           P+    HS   +  H+P     HSPE AV  +P+
Sbjct: 70  PEAAVYHSPEAAVFHSPEAAVYHSPEAAVYHSPE 103



 Score = 28.5 bits (62), Expect = 5.2
 Identities = 12/34 (35%), Positives = 17/34 (50%)

Query: 81  PDPRKQHSNRCSCTHAPACCQSHSPEPAVLKTPQ 114
           P+    HS   +  H+P     HSPE AV  +P+
Sbjct: 86  PEAAVYHSPEAAVYHSPEAAVFHSPEAAVYHSPE 119



 Score = 28.5 bits (62), Expect = 5.2
 Identities = 16/53 (30%), Positives = 23/53 (43%)

Query: 81  PDPRKQHSNRCSCTHAPACCQSHSPEPAVLKTPQQGQARRHPANPQGRPGASL 133
           P+    HS   +  H+P     HSPE AV  +P+    R   A     P A++
Sbjct: 102 PEAAVFHSPEAAVYHSPEAAVFHSPEAAVFHSPEAAVYRSPEAAVFRSPEAAV 154



 Score = 28.5 bits (62), Expect = 5.2
 Identities = 27/102 (26%), Positives = 35/102 (34%), Gaps = 6/102 (5%)

Query: 79  RRPDPRKQHSNRCSCTHAPACCQSHSPEPAVLKTPQQGQARRHPANPQGRPGASL----G 134
           R P+     S   +  H P     HSPE AV  +P+        A     PGA++    G
Sbjct: 220 RSPEAAVYRSPEAAVFHCPEAAVYHSPEAAVYHSPEASVFHSPGAAVFHSPGAAVYHSPG 279

Query: 135 AGAISLRQRLEVH--GEGLLFRLGRPLPVGPGQDVEHRPTEA 174
           A           H  G  +    G  +   PG  V H P  A
Sbjct: 280 AAVYHSPGAAVYHSPGAAVYHSPGAAVYHSPGAAVFHSPGAA 321



 Score = 28.5 bits (62), Expect = 5.2
 Identities = 17/63 (26%), Positives = 25/63 (39%)

Query: 71  RRKEKQRRRRPDPRKQHSNRCSCTHAPACCQSHSPEPAVLKTPQQGQARRHPANPQGRPG 130
           R  E    R P+    H    +  H+P     HSPE +V  +P+        A     PG
Sbjct: 825 RSPEAAVYRSPEAAVFHCPEAAVYHSPEAAVYHSPEASVFHSPEAAVYHSPEAAVFHSPG 884

Query: 131 ASL 133
           A++
Sbjct: 885 AAV 887



 Score = 28.1 bits (61), Expect = 6.8
 Identities = 12/34 (35%), Positives = 17/34 (50%)

Query: 81  PDPRKQHSNRCSCTHAPACCQSHSPEPAVLKTPQ 114
           P+    HS   +  H+P     HSPE AV  +P+
Sbjct: 78  PEAAVFHSPEAAVYHSPEAAVYHSPEAAVFHSPE 111



 Score = 28.1 bits (61), Expect = 6.8
 Identities = 16/53 (30%), Positives = 23/53 (43%)

Query: 81  PDPRKQHSNRCSCTHAPACCQSHSPEPAVLKTPQQGQARRHPANPQGRPGASL 133
           P+    HS   +  H+P     HSP  AV ++P     R   A     PGA++
Sbjct: 875 PEAAVFHSPGAAVFHSPGAAVFHSPGAAVYRSPGAAVYRSPGAAVYRSPGAAV 927



 Score = 27.7 bits (60), Expect = 8.9
 Identities = 28/110 (25%), Positives = 37/110 (33%), Gaps = 6/110 (5%)

Query: 71  RRKEKQRRRRPDPRKQHSNRCSCTHAPACCQSHSPEPAVLKTPQQGQARRHPANPQGRPG 130
           R  E    R P+    H    +  H+P     HSPE +V  +P         A     PG
Sbjct: 220 RSPEAAVYRSPEAAVFHCPEAAVYHSPEAAVYHSPEASVFHSPGAAVFHSPGAAVYHSPG 279

Query: 131 ASL----GAGAISLRQRLEVH--GEGLLFRLGRPLPVGPGQDVEHRPTEA 174
           A++    GA           H  G  +    G  +   PG  V H P  A
Sbjct: 280 AAVYHSPGAAVYHSPGAAVYHSPGAAVYHSPGAAVFHSPGAAVFHSPGAA 329


>gi|148491070 CTP synthase [Homo sapiens]
          Length = 591

 Score = 33.9 bits (76), Expect = 0.12
 Identities = 24/65 (36%), Positives = 29/65 (44%), Gaps = 13/65 (20%)

Query: 4   HGVQALGPGGW-----LGKCRVLVWRNNSMPQSRGVALGPQLAATALS------DKAQSA 52
           HGV  L PGG+      GK + + W  N      GV LG QLA    S        A S 
Sbjct: 365 HGV--LVPGGFGVRGTEGKIQAIAWARNQKKPFLGVCLGMQLAVVEFSRNVLGWQDANST 422

Query: 53  QYDPT 57
           ++DPT
Sbjct: 423 EFDPT 427


>gi|89363017 alpha 2 type V collagen preproprotein [Homo sapiens]
          Length = 1499

 Score = 32.3 bits (72), Expect = 0.36
 Identities = 35/108 (32%), Positives = 43/108 (39%), Gaps = 18/108 (16%)

Query: 113 PQQGQARRHPANPQGRPGASLGAGAISLRQRLEVHGE-GLLFRLGRPLPVG----PGQDV 167
           P   Q  R    P+GRPG     G         + GE G+  + G P P G    PG D 
Sbjct: 136 PPGSQGPRGERGPKGRPGPRGPQG---------IDGEPGVPGQPGAPGPPGHPSHPGPDG 186

Query: 168 EHRPTEA---GQQQAQHVGQDTLGLKCAILAPAGVEQQCLLQAQQGGA 212
             RP  A   G  +   +G   +GL    + P G      LQ QQGGA
Sbjct: 187 LSRPFSAQMAGLDEKSGLGSQ-VGLMPGSVGPVGPRGPQGLQGQQGGA 233


>gi|239749293 PREDICTED: hypothetical protein XP_002346984 [Homo
           sapiens]
          Length = 585

 Score = 32.3 bits (72), Expect = 0.36
 Identities = 22/80 (27%), Positives = 30/80 (37%), Gaps = 11/80 (13%)

Query: 72  RKEKQRRRRPDPRKQHSNRCSCTHAPACCQSHSPEPAVLKTPQQGQARRHPAN-PQGRPG 130
           R  ++RR RP+P                 ++  P P  L+ P        PA  P G  G
Sbjct: 442 RAARRRRTRPEPGPARRG----------ARAEPPGPPTLQDPPASHLGSSPAQAPSGEAG 491

Query: 131 ASLGAGAISLRQRLEVHGEG 150
              G GA+  R   +V G G
Sbjct: 492 RRAGGGAVGARSPGDVLGSG 511


>gi|239743383 PREDICTED: hypothetical protein XP_002342846 [Homo
           sapiens]
          Length = 585

 Score = 32.3 bits (72), Expect = 0.36
 Identities = 22/80 (27%), Positives = 30/80 (37%), Gaps = 11/80 (13%)

Query: 72  RKEKQRRRRPDPRKQHSNRCSCTHAPACCQSHSPEPAVLKTPQQGQARRHPAN-PQGRPG 130
           R  ++RR RP+P                 ++  P P  L+ P        PA  P G  G
Sbjct: 442 RAARRRRTRPEPGPARRG----------ARAEPPGPPTLQDPPASHLGSSPAQAPSGEAG 491

Query: 131 ASLGAGAISLRQRLEVHGEG 150
              G GA+  R   +V G G
Sbjct: 492 RRAGGGAVGARSPGDVLGSG 511


>gi|4507869 vasodilator-stimulated phosphoprotein [Homo sapiens]
          Length = 380

 Score = 32.0 bits (71), Expect = 0.47
 Identities = 19/63 (30%), Positives = 26/63 (41%)

Query: 74  EKQRRRRPDPRKQHSNRCSCTHAPACCQSHSPEPAVLKTPQQGQARRHPANPQGRPGASL 133
           E+Q+R++P P +    R S    P    +  P P     P  G        P G P A+ 
Sbjct: 139 EQQKRQQPGPSEHIERRVSNAGGPPAPPAGGPPPPPGPPPPPGPPPPPGLPPSGVPAAAH 198

Query: 134 GAG 136
           GAG
Sbjct: 199 GAG 201


>gi|29171711 melanoma antigen family B, 1 [Homo sapiens]
          Length = 347

 Score = 32.0 bits (71), Expect = 0.47
 Identities = 22/74 (29%), Positives = 31/74 (41%), Gaps = 7/74 (9%)

Query: 68  SHQRRKEKQRRRRPDPRKQHSNRCSCTHAPACCQSHSPE--PAVLKTPQQGQARRHPANP 125
           S  R +EK+R+ R     + +      HA A  +   P   P +  TP    A   P  P
Sbjct: 7   SKLRAREKRRKAR-----EETQGLKVAHATAAEKEECPSSSPVLGDTPTSSPAAGIPQKP 61

Query: 126 QGRPGASLGAGAIS 139
           QG P  +  A A+S
Sbjct: 62  QGAPPTTTAAAAVS 75


>gi|29171709 melanoma antigen family B, 1 [Homo sapiens]
          Length = 347

 Score = 32.0 bits (71), Expect = 0.47
 Identities = 22/74 (29%), Positives = 31/74 (41%), Gaps = 7/74 (9%)

Query: 68  SHQRRKEKQRRRRPDPRKQHSNRCSCTHAPACCQSHSPE--PAVLKTPQQGQARRHPANP 125
           S  R +EK+R+ R     + +      HA A  +   P   P +  TP    A   P  P
Sbjct: 7   SKLRAREKRRKAR-----EETQGLKVAHATAAEKEECPSSSPVLGDTPTSSPAAGIPQKP 61

Query: 126 QGRPGASLGAGAIS 139
           QG P  +  A A+S
Sbjct: 62  QGAPPTTTAAAAVS 75


>gi|29171707 melanoma antigen family B, 1 [Homo sapiens]
          Length = 347

 Score = 32.0 bits (71), Expect = 0.47
 Identities = 22/74 (29%), Positives = 31/74 (41%), Gaps = 7/74 (9%)

Query: 68  SHQRRKEKQRRRRPDPRKQHSNRCSCTHAPACCQSHSPE--PAVLKTPQQGQARRHPANP 125
           S  R +EK+R+ R     + +      HA A  +   P   P +  TP    A   P  P
Sbjct: 7   SKLRAREKRRKAR-----EETQGLKVAHATAAEKEECPSSSPVLGDTPTSSPAAGIPQKP 61

Query: 126 QGRPGASLGAGAIS 139
           QG P  +  A A+S
Sbjct: 62  QGAPPTTTAAAAVS 75


>gi|191252814 RIMS binding protein 3B [Homo sapiens]
          Length = 1639

 Score = 31.6 bits (70), Expect = 0.62
 Identities = 20/72 (27%), Positives = 28/72 (38%), Gaps = 8/72 (11%)

Query: 66   CLSHQRRKEKQRRRRPDPRKQHSNRCSCTHAPACCQSHSPEPAVLKTPQQGQARRHPANP 125
            CL  +  + ++ RR P+P   HS +         CQ H P  A+   P     +     P
Sbjct: 1387 CLDLRGTERREERREPEP---HSRQGQALGVKRGCQLHEPSSALCPAPSAKVIKMPRGGP 1443

Query: 126  QGRPGASLGAGA 137
            Q      LG GA
Sbjct: 1444 Q-----QLGTGA 1450


>gi|191252806 RIMS binding protein 3C [Homo sapiens]
          Length = 1639

 Score = 31.6 bits (70), Expect = 0.62
 Identities = 20/72 (27%), Positives = 28/72 (38%), Gaps = 8/72 (11%)

Query: 66   CLSHQRRKEKQRRRRPDPRKQHSNRCSCTHAPACCQSHSPEPAVLKTPQQGQARRHPANP 125
            CL  +  + ++ RR P+P   HS +         CQ H P  A+   P     +     P
Sbjct: 1387 CLDLRGTERREERREPEP---HSRQGQALGVKRGCQLHEPSSALCPAPSAKVIKMPRGGP 1443

Query: 126  QGRPGASLGAGA 137
            Q      LG GA
Sbjct: 1444 Q-----QLGTGA 1450


>gi|239757324 PREDICTED: hypothetical protein XP_002345241 [Homo
           sapiens]
          Length = 582

 Score = 31.6 bits (70), Expect = 0.62
 Identities = 49/199 (24%), Positives = 69/199 (34%), Gaps = 36/199 (18%)

Query: 40  LAATALSDKAQSAQYDPTQICQKLTFCLSHQRRKEKQRRRRPDPRKQHSNRCSCTHAPAC 99
           + A     KA    + P    Q+      H   + +Q    P  +K H N C+   A + 
Sbjct: 22  IEAAVSEGKAHDEGFSPQGPGQECGVRGRHSEHQPQQVVGCPADKKPHHNGCAQRPAASG 81

Query: 100 CQSHSPEPAVLKTPQQGQARRHPANPQGRPGAS---LGAGAISLRQRLEVHGEGLLFRLG 156
           C      PA   T   G   + P   + +P  S   LGAG  ++       G  +L  L 
Sbjct: 82  C------PAQEGTVAAGHGHQGPQEAKKKPDGSHRILGAGGAAVVHHTLQPGWEVL--LV 133

Query: 157 RPLPVGPGQDVEHRPTEAGQQQAQHVGQDTLGLKCAIL-------------APAGVEQQC 203
           +P   G G          G+QQ Q  G  T  L  A               A  G E   
Sbjct: 134 QPAVDGGGH---------GEQQGQCPGCPTGHLHPARPLNRRPPGRPESQEAEVGTES-- 182

Query: 204 LLQAQQGGAHGKEEDGSTK 222
             Q Q  G HG+++DG  +
Sbjct: 183 -CQEQDAGIHGQQDDGGQR 200


>gi|239751831 PREDICTED: hypothetical protein XP_002348009 [Homo
           sapiens]
          Length = 589

 Score = 31.6 bits (70), Expect = 0.62
 Identities = 49/199 (24%), Positives = 69/199 (34%), Gaps = 36/199 (18%)

Query: 40  LAATALSDKAQSAQYDPTQICQKLTFCLSHQRRKEKQRRRRPDPRKQHSNRCSCTHAPAC 99
           + A     KA    + P    Q+      H   + +Q    P  +K H N C+   A + 
Sbjct: 29  IEAAVSEGKAHDEGFSPQGPGQECGVRGRHSEHQPQQVVGCPADKKPHHNGCAQRPAASG 88

Query: 100 CQSHSPEPAVLKTPQQGQARRHPANPQGRPGAS---LGAGAISLRQRLEVHGEGLLFRLG 156
           C      PA   T   G   + P   + +P  S   LGAG  ++       G  +L  L 
Sbjct: 89  C------PAQEGTVAAGHGHQGPQEAKKKPDGSHRILGAGGAAVVHHTLQPGWEVL--LV 140

Query: 157 RPLPVGPGQDVEHRPTEAGQQQAQHVGQDTLGLKCAIL-------------APAGVEQQC 203
           +P   G G          G+QQ Q  G  T  L  A               A  G E   
Sbjct: 141 QPAVDGGGH---------GEQQGQCPGCPTGHLHPARPLNRRPPGRPESQEAEVGTES-- 189

Query: 204 LLQAQQGGAHGKEEDGSTK 222
             Q Q  G HG+++DG  +
Sbjct: 190 -CQEQDAGIHGQQDDGGQR 207


>gi|239746324 PREDICTED: hypothetical protein XP_002343730 [Homo
           sapiens]
          Length = 329

 Score = 31.6 bits (70), Expect = 0.62
 Identities = 49/199 (24%), Positives = 69/199 (34%), Gaps = 36/199 (18%)

Query: 40  LAATALSDKAQSAQYDPTQICQKLTFCLSHQRRKEKQRRRRPDPRKQHSNRCSCTHAPAC 99
           + A     KA    + P    Q+      H   + +Q    P  +K H N C+   A + 
Sbjct: 29  IEAAVSEGKAHDEGFSPQGPGQECGVRGRHSEHQPQQVVGCPADKKPHHNGCAQRPAASG 88

Query: 100 CQSHSPEPAVLKTPQQGQARRHPANPQGRPGAS---LGAGAISLRQRLEVHGEGLLFRLG 156
           C      PA   T   G   + P   + +P  S   LGAG  ++       G  +L  L 
Sbjct: 89  C------PAQEGTVAAGHGHQGPQEAKKKPDGSHRILGAGGAAVVHHTLQPGWEVL--LV 140

Query: 157 RPLPVGPGQDVEHRPTEAGQQQAQHVGQDTLGLKCAIL-------------APAGVEQQC 203
           +P   G G          G+QQ Q  G  T  L  A               A  G E   
Sbjct: 141 QPAVDGGGH---------GEQQGQCPGCPTGHLHPARPLNRRPPGRPESQEAEVGTES-- 189

Query: 204 LLQAQQGGAHGKEEDGSTK 222
             Q Q  G HG+++DG  +
Sbjct: 190 -CQEQDAGIHGQQDDGGQR 207


>gi|215820619 zinc finger protein 646 [Homo sapiens]
          Length = 1832

 Score = 31.2 bits (69), Expect = 0.81
 Identities = 31/110 (28%), Positives = 43/110 (39%), Gaps = 14/110 (12%)

Query: 69   HQRRKEKQRRRRPDPRKQHSNRCSCTHAPACCQSHSPEPAVLK--TPQQGQARRHPANPQ 126
            HQR   + RRRR    ++ + RC      A C    P    L+    +  +  R PAN Q
Sbjct: 1344 HQRLHSENRRRRAGRSRRTAVRC------ALCGRSFPGRGSLERHLREHEETEREPANGQ 1397

Query: 127  GRPGASLGAGAISLRQRLEVHGEGLLFRLGRPLPVGPGQDVEHRPTEAGQ 176
            G      G    +  +      +GL  +LG   PV   +D   RP E  Q
Sbjct: 1398 G------GLDGTAASEANLTGSQGLETQLGGAEPVPHLEDGVPRPGERSQ 1441


>gi|224548936 hypothetical protein LOC100170229 [Homo sapiens]
          Length = 715

 Score = 30.8 bits (68), Expect = 1.1
 Identities = 28/98 (28%), Positives = 40/98 (40%), Gaps = 8/98 (8%)

Query: 69  HQRRKEKQRRRRPDPRKQHSNRCSCTHA--PACCQSHSPEPAVLKTPQQGQARRHPANPQ 126
           HQRR    R R P  R   S++ S + A  P   ++H   P +       + R   +  +
Sbjct: 112 HQRRGTHSRGRTPGRRGSRSSKRSPSRASTPGRIRTHGARPGM-----ASRVRTPTSQQK 166

Query: 127 GRPGASLGAGAISLRQRLEVHGEGLLFRLGRPLPVGPG 164
           G  G S G    S R+R +     L  +  RP P G G
Sbjct: 167 GSRGKSYGRPRTSNRERSDSQPRNLSKKSYRP-PGGSG 203


>gi|170932471 hypothetical protein LOC79703 [Homo sapiens]
          Length = 677

 Score = 30.8 bits (68), Expect = 1.1
 Identities = 31/104 (29%), Positives = 41/104 (39%), Gaps = 16/104 (15%)

Query: 47  DKAQSAQYDPTQICQKLTFCLSHQRRKEKQRRRRPDPRKQHSNRCSCTHAPACCQSHSPE 106
           D AQ  +  P     +L    S Q   E +R +R  PR +         AP      SP 
Sbjct: 564 DSAQGTEDAPDNSSLELLADTSGQA--ENKRLKRGSPRIEEMRALRSARAP------SPS 615

Query: 107 PAVLKTPQQGQARRHPANPQGRP-----GASLGAGAISLRQRLE 145
            A    P++ +A   P  P+GR      G +L  G  SL  RLE
Sbjct: 616 EA---APRRPEATAAPLTPRGREHREAHGRALAPGRASLGSRLE 656


>gi|58218966 hypothetical protein LOC339201 [Homo sapiens]
          Length = 193

 Score = 30.8 bits (68), Expect = 1.1
 Identities = 23/75 (30%), Positives = 29/75 (38%), Gaps = 11/75 (14%)

Query: 70  QRRKEKQRRRRPDPRKQHSNRCSCTHAPACCQ--SHSPEPAVLKTPQQGQA--------R 119
           QR        RP PR +   RC+     AC +   H  +P     PQ G A        +
Sbjct: 52  QRGPRNAAAARPGPRSRWHKRCAAA-CGACARPPGHQLQPPGAGAPQPGVACSYLGPRPQ 110

Query: 120 RHPANPQGRPGASLG 134
           R P + Q RPG   G
Sbjct: 111 RTPCSAQSRPGWCAG 125


>gi|23397666 transcriptional co-repressor Sin3A [Homo sapiens]
          Length = 1273

 Score = 30.4 bits (67), Expect = 1.4
 Identities = 20/51 (39%), Positives = 26/51 (50%), Gaps = 2/51 (3%)

Query: 80  RPDPRKQHSNRCSCTHAPACCQ-SHSPEPAVLKTPQQGQARRHPANPQGRP 129
           +P P  QH ++ S   APA  Q +  P PA +  P Q QA   PA+ Q  P
Sbjct: 219 QPQPPPQHPSQPSAQSAPAPAQPAPQPPPAKVSKPSQLQAHT-PASQQTPP 268


>gi|223941785 transcriptional co-repressor Sin3A [Homo sapiens]
          Length = 1273

 Score = 30.4 bits (67), Expect = 1.4
 Identities = 20/51 (39%), Positives = 26/51 (50%), Gaps = 2/51 (3%)

Query: 80  RPDPRKQHSNRCSCTHAPACCQ-SHSPEPAVLKTPQQGQARRHPANPQGRP 129
           +P P  QH ++ S   APA  Q +  P PA +  P Q QA   PA+ Q  P
Sbjct: 219 QPQPPPQHPSQPSAQSAPAPAQPAPQPPPAKVSKPSQLQAHT-PASQQTPP 268


>gi|223941782 transcriptional co-repressor Sin3A [Homo sapiens]
          Length = 1273

 Score = 30.4 bits (67), Expect = 1.4
 Identities = 20/51 (39%), Positives = 26/51 (50%), Gaps = 2/51 (3%)

Query: 80  RPDPRKQHSNRCSCTHAPACCQ-SHSPEPAVLKTPQQGQARRHPANPQGRP 129
           +P P  QH ++ S   APA  Q +  P PA +  P Q QA   PA+ Q  P
Sbjct: 219 QPQPPPQHPSQPSAQSAPAPAQPAPQPPPAKVSKPSQLQAHT-PASQQTPP 268


>gi|32479521 dishevelled 1 [Homo sapiens]
          Length = 670

 Score = 30.4 bits (67), Expect = 1.4
 Identities = 23/82 (28%), Positives = 34/82 (41%), Gaps = 16/82 (19%)

Query: 24  RNNSMPQS---RGVALGPQLAATALSDKAQSAQY-------------DPTQICQKLTFCL 67
           R N  P+    R V L P  A+TALS + +S+ +               T+         
Sbjct: 158 RTNGHPRGDRRRDVGLPPDSASTALSSELESSSFVDSDEDGSTSRLSSSTEQSTSSRLIR 217

Query: 68  SHQRRKEKQRRRRPDPRKQHSN 89
            H+RR+ KQR R+ D     S+
Sbjct: 218 KHKRRRRKQRLRQADRASSFSS 239


>gi|19718731 bromodomain-containing protein 4 isoform long [Homo
            sapiens]
          Length = 1362

 Score = 30.4 bits (67), Expect = 1.4
 Identities = 14/51 (27%), Positives = 30/51 (58%)

Query: 70   QRRKEKQRRRRPDPRKQHSNRCSCTHAPACCQSHSPEPAVLKTPQQGQARR 120
            +RR+E+Q+++R + ++Q   + +   A A  Q+ S +P  +   Q+  AR+
Sbjct: 1280 RRRQEQQQQQRQEQQQQQQQQAAAVAAAATPQAQSSQPQSMLDQQRELARK 1330


>gi|153792195 DKFZP434H0735 protein [Homo sapiens]
          Length = 1639

 Score = 30.4 bits (67), Expect = 1.4
 Identities = 20/72 (27%), Positives = 27/72 (37%), Gaps = 8/72 (11%)

Query: 66   CLSHQRRKEKQRRRRPDPRKQHSNRCSCTHAPACCQSHSPEPAVLKTPQQGQARRHPANP 125
            CL     + ++ RR P+P   HS +         CQ H P  A+   P     +     P
Sbjct: 1387 CLDLWGTERREERREPEP---HSRQGQALGVKRGCQLHEPSSALCPAPSAKVIKMPRGGP 1443

Query: 126  QGRPGASLGAGA 137
            Q      LG GA
Sbjct: 1444 Q-----QLGTGA 1450


>gi|239754887 PREDICTED: hypothetical protein XP_002346152 [Homo
           sapiens]
          Length = 517

 Score = 30.0 bits (66), Expect = 1.8
 Identities = 46/183 (25%), Positives = 61/183 (33%), Gaps = 45/183 (24%)

Query: 35  ALGPQLAATALSDKAQSAQYDPTQICQKLT-------------------FCLSHQRRKEK 75
           ALG Q     LS   Q A   P Q    L                     CL H+    +
Sbjct: 282 ALGAQRGRLRLSQAVQEAALHPLQPLHLLAPPRPVLVVGVVLHVLHAQPLCLLHEGPLLR 341

Query: 76  QRRRRPDPRKQHSNRCSCTHAPACCQSHS----PEPAVLKTPQQGQARRHPANPQGRPGA 131
           QR+R P        R +CTH              +P  L      ++   P +     G+
Sbjct: 342 QRQRLP--------RLACTHLAQLGVVQVWILLRQPLALVLSPHHESVHRPPDTGLALGS 393

Query: 132 SLGAGAIS-LRQRLEVHGEGLLFRLGRPLPVGPGQDVEHRPTEAGQQQAQHVGQDTLGLK 190
           + G G  S +R+RL +H    L        +GPG         AG Q   H GQ  LGL 
Sbjct: 394 ARGPGRCSAVRRRLALH----LHVPDGAQRLGPG---------AGAQPGHHRGQRALGLA 440

Query: 191 CAI 193
             +
Sbjct: 441 LVV 443


>gi|239749426 PREDICTED: hypothetical protein XP_002347042 [Homo
           sapiens]
          Length = 517

 Score = 30.0 bits (66), Expect = 1.8
 Identities = 46/183 (25%), Positives = 61/183 (33%), Gaps = 45/183 (24%)

Query: 35  ALGPQLAATALSDKAQSAQYDPTQICQKLT-------------------FCLSHQRRKEK 75
           ALG Q     LS   Q A   P Q    L                     CL H+    +
Sbjct: 282 ALGAQRGRLRLSQAVQEAALHPLQPLHLLAPPRPVLVVGVVLHVLHAQPLCLLHEGPLLR 341

Query: 76  QRRRRPDPRKQHSNRCSCTHAPACCQSHS----PEPAVLKTPQQGQARRHPANPQGRPGA 131
           QR+R P        R +CTH              +P  L      ++   P +     G+
Sbjct: 342 QRQRLP--------RLACTHLAQLGVVQVWILLRQPLALVLSPHHESVHRPPDTGLALGS 393

Query: 132 SLGAGAIS-LRQRLEVHGEGLLFRLGRPLPVGPGQDVEHRPTEAGQQQAQHVGQDTLGLK 190
           + G G  S +R+RL +H    L        +GPG         AG Q   H GQ  LGL 
Sbjct: 394 ARGPGRCSAVRRRLALH----LHVPDGAQRLGPG---------AGAQPGHHRGQRALGLA 440

Query: 191 CAI 193
             +
Sbjct: 441 LVV 443


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.316    0.132    0.415 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,929,871
Number of Sequences: 37866
Number of extensions: 665522
Number of successful extensions: 2599
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 82
Number of HSP's that attempted gapping in prelim test: 2474
Number of HSP's gapped (non-prelim): 184
length of query: 235
length of database: 18,247,518
effective HSP length: 99
effective length of query: 136
effective length of database: 14,498,784
effective search space: 1971834624
effective search space used: 1971834624
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 60 (27.7 bits)

Search results were obtained with NCBI BLAST and RefSeq entries.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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