Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Search of human proteins with 239745777

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|239745777 PREDICTED: hypothetical protein XP_002343552 [Homo
sapiens]
         (121 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|239756788 PREDICTED: hypothetical protein [Homo sapiens]           254   1e-68
gi|239751282 PREDICTED: hypothetical protein XP_002347785 [Homo ...   254   1e-68
gi|239745777 PREDICTED: hypothetical protein XP_002343552 [Homo ...   254   1e-68
gi|239744733 PREDICTED: hypothetical protein XP_002343257 [Homo ...   119   7e-28
gi|239753106 PREDICTED: similar to hCG1817845 [Homo sapiens]           30   0.33 
gi|30089935 transmembrane protein 132A isoform a [Homo sapiens]        29   0.97 
gi|30089937 transmembrane protein 132A isoform b [Homo sapiens]        29   0.97 
gi|20127386 l-myc-1 proto-oncogene isoform 2 [Homo sapiens]            27   3.7  
gi|74315997 l-myc-1 proto-oncogene isoform 1 [Homo sapiens]            27   3.7  
gi|74315995 l-myc-1 proto-oncogene isoform 1 [Homo sapiens]            27   3.7  
gi|62122917 filaggrin family member 2 [Homo sapiens]                   27   4.8  
gi|187608363 cell adhesion molecule 3 isoform 2 [Homo sapiens]         27   4.8  
gi|11056046 cell adhesion molecule 3 isoform 1 [Homo sapiens]          27   4.8  
gi|94538343 sialic acid binding Ig-like lectin 8 [Homo sapiens]        26   6.3  
gi|64368880 zinc finger and SCAN domain containing 25 [Homo sapi...    26   6.3  
gi|59806361 hypothetical protein LOC387104 [Homo sapiens]              26   8.2  
gi|169208819 PREDICTED: similar to kinase D-interacting substrat...    26   8.2  
gi|169208593 PREDICTED: similar to kinase D-interacting substrat...    26   8.2  
gi|169208169 PREDICTED: similar to kinase D-interacting substrat...    26   8.2  

>gi|239756788 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 121

 Score =  254 bits (648), Expect = 1e-68
 Identities = 121/121 (100%), Positives = 121/121 (100%)

Query: 1   MTRMLRPVSCASCSRMWRVGLGVAAKAAFSVSSCLALMVVRGPRRLAPRFWSSFSLLPAS 60
           MTRMLRPVSCASCSRMWRVGLGVAAKAAFSVSSCLALMVVRGPRRLAPRFWSSFSLLPAS
Sbjct: 1   MTRMLRPVSCASCSRMWRVGLGVAAKAAFSVSSCLALMVVRGPRRLAPRFWSSFSLLPAS 60

Query: 61  LSDTLALSESLASSCDGSWESGDKLGSLPVELGPHPSEGCSLWQHCCYLGNPLCRRTYSR 120
           LSDTLALSESLASSCDGSWESGDKLGSLPVELGPHPSEGCSLWQHCCYLGNPLCRRTYSR
Sbjct: 61  LSDTLALSESLASSCDGSWESGDKLGSLPVELGPHPSEGCSLWQHCCYLGNPLCRRTYSR 120

Query: 121 R 121
           R
Sbjct: 121 R 121


>gi|239751282 PREDICTED: hypothetical protein XP_002347785 [Homo
           sapiens]
          Length = 121

 Score =  254 bits (648), Expect = 1e-68
 Identities = 121/121 (100%), Positives = 121/121 (100%)

Query: 1   MTRMLRPVSCASCSRMWRVGLGVAAKAAFSVSSCLALMVVRGPRRLAPRFWSSFSLLPAS 60
           MTRMLRPVSCASCSRMWRVGLGVAAKAAFSVSSCLALMVVRGPRRLAPRFWSSFSLLPAS
Sbjct: 1   MTRMLRPVSCASCSRMWRVGLGVAAKAAFSVSSCLALMVVRGPRRLAPRFWSSFSLLPAS 60

Query: 61  LSDTLALSESLASSCDGSWESGDKLGSLPVELGPHPSEGCSLWQHCCYLGNPLCRRTYSR 120
           LSDTLALSESLASSCDGSWESGDKLGSLPVELGPHPSEGCSLWQHCCYLGNPLCRRTYSR
Sbjct: 61  LSDTLALSESLASSCDGSWESGDKLGSLPVELGPHPSEGCSLWQHCCYLGNPLCRRTYSR 120

Query: 121 R 121
           R
Sbjct: 121 R 121


>gi|239745777 PREDICTED: hypothetical protein XP_002343552 [Homo
           sapiens]
          Length = 121

 Score =  254 bits (648), Expect = 1e-68
 Identities = 121/121 (100%), Positives = 121/121 (100%)

Query: 1   MTRMLRPVSCASCSRMWRVGLGVAAKAAFSVSSCLALMVVRGPRRLAPRFWSSFSLLPAS 60
           MTRMLRPVSCASCSRMWRVGLGVAAKAAFSVSSCLALMVVRGPRRLAPRFWSSFSLLPAS
Sbjct: 1   MTRMLRPVSCASCSRMWRVGLGVAAKAAFSVSSCLALMVVRGPRRLAPRFWSSFSLLPAS 60

Query: 61  LSDTLALSESLASSCDGSWESGDKLGSLPVELGPHPSEGCSLWQHCCYLGNPLCRRTYSR 120
           LSDTLALSESLASSCDGSWESGDKLGSLPVELGPHPSEGCSLWQHCCYLGNPLCRRTYSR
Sbjct: 61  LSDTLALSESLASSCDGSWESGDKLGSLPVELGPHPSEGCSLWQHCCYLGNPLCRRTYSR 120

Query: 121 R 121
           R
Sbjct: 121 R 121


>gi|239744733 PREDICTED: hypothetical protein XP_002343257 [Homo
           sapiens]
          Length = 659

 Score =  119 bits (297), Expect = 7e-28
 Identities = 61/77 (79%), Positives = 63/77 (81%)

Query: 12  SCSRMWRVGLGVAAKAAFSVSSCLALMVVRGPRRLAPRFWSSFSLLPASLSDTLALSESL 71
           SCSRMWRVGLGVAAKAA SVSSCLALMVVRGPRRL P F SSFSLL  SLSD + LS SL
Sbjct: 179 SCSRMWRVGLGVAAKAALSVSSCLALMVVRGPRRLVPEFCSSFSLLAVSLSDEVELSVSL 238

Query: 72  ASSCDGSWESGDKLGSL 88
            SSC  SW SGDKL S+
Sbjct: 239 GSSCSASWRSGDKLRSV 255


>gi|239753106 PREDICTED: similar to hCG1817845 [Homo sapiens]
          Length = 1090

 Score = 30.4 bits (67), Expect = 0.33
 Identities = 23/67 (34%), Positives = 30/67 (44%), Gaps = 6/67 (8%)

Query: 42  GPRRLAP---RFWSSFSLLPASLSDTLALSESLASSCDGSWESGDKLGSLPVELGPHPSE 98
           GPR   P   +  + F LL +  SDT AL     +    +   G   G L V   P  + 
Sbjct: 267 GPRATGPAQPKIQARFLLLQSHHSDTRALPTDTGTLTIPAPTRGSDTGMLTV---PATTR 323

Query: 99  GCSLWQH 105
           GCSL+QH
Sbjct: 324 GCSLFQH 330


>gi|30089935 transmembrane protein 132A isoform a [Homo sapiens]
          Length = 1024

 Score = 28.9 bits (63), Expect = 0.97
 Identities = 26/91 (28%), Positives = 41/91 (45%), Gaps = 17/91 (18%)

Query: 32  SSCLALMVVRGPRR-LAPRFWSSFS---LLPASLSDTLALSESLASSCDGSW----ESGD 83
           ++C A   +  P++ +A   W SFS   + PA L D   L  S+++   G+     E G 
Sbjct: 664 ATCWAQSALPAPKQEVALSLWLSFSDHTVAPAELYDRRDLGLSVSAEEPGAILPAEEQGA 723

Query: 84  KLG---------SLPVELGPHPSEGCSLWQH 105
           +LG          LP+ +  HP E C   +H
Sbjct: 724 QLGVVVSGAGAEGLPLHVALHPPEPCRRGRH 754


>gi|30089937 transmembrane protein 132A isoform b [Homo sapiens]
          Length = 1023

 Score = 28.9 bits (63), Expect = 0.97
 Identities = 26/91 (28%), Positives = 41/91 (45%), Gaps = 17/91 (18%)

Query: 32  SSCLALMVVRGPRR-LAPRFWSSFS---LLPASLSDTLALSESLASSCDGSW----ESGD 83
           ++C A   +  P++ +A   W SFS   + PA L D   L  S+++   G+     E G 
Sbjct: 663 ATCWAQSALPAPKQEVALSLWLSFSDHTVAPAELYDRRDLGLSVSAEEPGAILPAEEQGA 722

Query: 84  KLG---------SLPVELGPHPSEGCSLWQH 105
           +LG          LP+ +  HP E C   +H
Sbjct: 723 QLGVVVSGAGAEGLPLHVALHPPEPCRRGRH 753


>gi|20127386 l-myc-1 proto-oncogene isoform 2 [Homo sapiens]
          Length = 206

 Score = 26.9 bits (58), Expect = 3.7
 Identities = 20/62 (32%), Positives = 27/62 (43%), Gaps = 11/62 (17%)

Query: 51  WSSFSL---LPASLSDTLALSE--------SLASSCDGSWESGDKLGSLPVELGPHPSEG 99
           WS FS    L  ++SD LA           S A  C  S E+G+   + P  LG   ++ 
Sbjct: 96  WSGFSARERLERAVSDRLAPGAPRGNPPKASAAPDCTPSLEAGNPAPAAPCPLGEPKTQA 155

Query: 100 CS 101
           CS
Sbjct: 156 CS 157


>gi|74315997 l-myc-1 proto-oncogene isoform 1 [Homo sapiens]
          Length = 364

 Score = 26.9 bits (58), Expect = 3.7
 Identities = 20/62 (32%), Positives = 27/62 (43%), Gaps = 11/62 (17%)

Query: 51  WSSFSL---LPASLSDTLALSE--------SLASSCDGSWESGDKLGSLPVELGPHPSEG 99
           WS FS    L  ++SD LA           S A  C  S E+G+   + P  LG   ++ 
Sbjct: 96  WSGFSARERLERAVSDRLAPGAPRGNPPKASAAPDCTPSLEAGNPAPAAPCPLGEPKTQA 155

Query: 100 CS 101
           CS
Sbjct: 156 CS 157


>gi|74315995 l-myc-1 proto-oncogene isoform 1 [Homo sapiens]
          Length = 364

 Score = 26.9 bits (58), Expect = 3.7
 Identities = 20/62 (32%), Positives = 27/62 (43%), Gaps = 11/62 (17%)

Query: 51  WSSFSL---LPASLSDTLALSE--------SLASSCDGSWESGDKLGSLPVELGPHPSEG 99
           WS FS    L  ++SD LA           S A  C  S E+G+   + P  LG   ++ 
Sbjct: 96  WSGFSARERLERAVSDRLAPGAPRGNPPKASAAPDCTPSLEAGNPAPAAPCPLGEPKTQA 155

Query: 100 CS 101
           CS
Sbjct: 156 CS 157


>gi|62122917 filaggrin family member 2 [Homo sapiens]
          Length = 2391

 Score = 26.6 bits (57), Expect = 4.8
 Identities = 11/32 (34%), Positives = 15/32 (46%)

Query: 74  SCDGSWESGDKLGSLPVELGPHPSEGCSLWQH 105
           +C G W +G    S   + G   S+ CS  QH
Sbjct: 365 NCGGQWRTGSSQSSCCGQYGSGGSQSCSNGQH 396


>gi|187608363 cell adhesion molecule 3 isoform 2 [Homo sapiens]
          Length = 398

 Score = 26.6 bits (57), Expect = 4.8
 Identities = 11/20 (55%), Positives = 12/20 (60%)

Query: 94  PHPSEGCSLWQHCCYLGNPL 113
           PHP EG  L  HC   GNP+
Sbjct: 242 PHPREGQKLLLHCEGRGNPV 261


>gi|11056046 cell adhesion molecule 3 isoform 1 [Homo sapiens]
          Length = 432

 Score = 26.6 bits (57), Expect = 4.8
 Identities = 11/20 (55%), Positives = 12/20 (60%)

Query: 94  PHPSEGCSLWQHCCYLGNPL 113
           PHP EG  L  HC   GNP+
Sbjct: 276 PHPREGQKLLLHCEGRGNPV 295


>gi|94538343 sialic acid binding Ig-like lectin 8 [Homo sapiens]
          Length = 499

 Score = 26.2 bits (56), Expect = 6.3
 Identities = 23/94 (24%), Positives = 40/94 (42%), Gaps = 7/94 (7%)

Query: 6   RPVSCASCSRMWRVGLGVAAKAAFSVSSCLALMVVRGPRRLAPRFWSSFSLLPASLSDTL 65
           RPVS  + + +     G  A A   +S C+  ++VR  R+ + R   +  +    + D  
Sbjct: 354 RPVSQVTLAAVG----GAGATALAFLSFCIIFIIVRSCRKKSAR--PAAGVGDTGMEDAK 407

Query: 66  ALSESLASS-CDGSWESGDKLGSLPVELGPHPSE 98
           A+  S +      SW+ G+ L   P  + P   E
Sbjct: 408 AIRGSASQGPLTESWKDGNPLKKPPPAVAPSSGE 441


>gi|64368880 zinc finger and SCAN domain containing 25 [Homo
           sapiens]
          Length = 544

 Score = 26.2 bits (56), Expect = 6.3
 Identities = 13/27 (48%), Positives = 16/27 (59%), Gaps = 2/27 (7%)

Query: 75  CDGSWESGDKLGSLPV--ELGPHPSEG 99
           C G+WE G +LG + V  E G  P EG
Sbjct: 144 CRGAWEPGIQLGPVEVKPEWGMPPGEG 170


>gi|59806361 hypothetical protein LOC387104 [Homo sapiens]
          Length = 947

 Score = 25.8 bits (55), Expect = 8.2
 Identities = 14/44 (31%), Positives = 19/44 (43%)

Query: 55  SLLPASLSDTLALSESLASSCDGSWESGDKLGSLPVELGPHPSE 98
           +L  AS S   A +E    S +GS   G    + P    PHP +
Sbjct: 302 TLAVASASPMAAAAEGPQQSAEGSASGGGMQAAAPPSSQPHPQQ 345


>gi|169208819 PREDICTED: similar to kinase D-interacting substrate
           220 [Homo sapiens]
          Length = 380

 Score = 25.8 bits (55), Expect = 8.2
 Identities = 15/42 (35%), Positives = 18/42 (42%), Gaps = 7/42 (16%)

Query: 65  LALSESLASSCDGSWESGD-------KLGSLPVELGPHPSEG 99
           +AL  S  SS  G W S +        L   P+ L PHP  G
Sbjct: 278 MALPNSPQSSGTGRWRSQEVLEGAPPTLAQAPIGLSPHPEGG 319


>gi|169208593 PREDICTED: similar to kinase D-interacting substrate
           220 [Homo sapiens]
          Length = 380

 Score = 25.8 bits (55), Expect = 8.2
 Identities = 15/42 (35%), Positives = 18/42 (42%), Gaps = 7/42 (16%)

Query: 65  LALSESLASSCDGSWESGD-------KLGSLPVELGPHPSEG 99
           +AL  S  SS  G W S +        L   P+ L PHP  G
Sbjct: 278 MALPNSPQSSGTGRWRSQEVLEGAPPTLAQAPIGLSPHPEGG 319


>gi|169208169 PREDICTED: similar to kinase D-interacting substrate
           220 [Homo sapiens]
          Length = 380

 Score = 25.8 bits (55), Expect = 8.2
 Identities = 15/42 (35%), Positives = 18/42 (42%), Gaps = 7/42 (16%)

Query: 65  LALSESLASSCDGSWESGD-------KLGSLPVELGPHPSEG 99
           +AL  S  SS  G W S +        L   P+ L PHP  G
Sbjct: 278 MALPNSPQSSGTGRWRSQEVLEGAPPTLAQAPIGLSPHPEGG 319


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.323    0.133    0.443 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,438,236
Number of Sequences: 37866
Number of extensions: 231051
Number of successful extensions: 800
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 790
Number of HSP's gapped (non-prelim): 24
length of query: 121
length of database: 18,247,518
effective HSP length: 89
effective length of query: 32
effective length of database: 14,877,444
effective search space: 476078208
effective search space used: 476078208
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 55 (25.8 bits)

Search results were obtained with NCBI BLAST and RefSeq entries.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press