Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Search of human proteins with 239745777
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239745777 PREDICTED: hypothetical protein XP_002343552 [Homo
sapiens]
(121 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239756788 PREDICTED: hypothetical protein [Homo sapiens] 254 1e-68
gi|239751282 PREDICTED: hypothetical protein XP_002347785 [Homo ... 254 1e-68
gi|239745777 PREDICTED: hypothetical protein XP_002343552 [Homo ... 254 1e-68
gi|239744733 PREDICTED: hypothetical protein XP_002343257 [Homo ... 119 7e-28
gi|239753106 PREDICTED: similar to hCG1817845 [Homo sapiens] 30 0.33
gi|30089935 transmembrane protein 132A isoform a [Homo sapiens] 29 0.97
gi|30089937 transmembrane protein 132A isoform b [Homo sapiens] 29 0.97
gi|20127386 l-myc-1 proto-oncogene isoform 2 [Homo sapiens] 27 3.7
gi|74315997 l-myc-1 proto-oncogene isoform 1 [Homo sapiens] 27 3.7
gi|74315995 l-myc-1 proto-oncogene isoform 1 [Homo sapiens] 27 3.7
gi|62122917 filaggrin family member 2 [Homo sapiens] 27 4.8
gi|187608363 cell adhesion molecule 3 isoform 2 [Homo sapiens] 27 4.8
gi|11056046 cell adhesion molecule 3 isoform 1 [Homo sapiens] 27 4.8
gi|94538343 sialic acid binding Ig-like lectin 8 [Homo sapiens] 26 6.3
gi|64368880 zinc finger and SCAN domain containing 25 [Homo sapi... 26 6.3
gi|59806361 hypothetical protein LOC387104 [Homo sapiens] 26 8.2
gi|169208819 PREDICTED: similar to kinase D-interacting substrat... 26 8.2
gi|169208593 PREDICTED: similar to kinase D-interacting substrat... 26 8.2
gi|169208169 PREDICTED: similar to kinase D-interacting substrat... 26 8.2
>gi|239756788 PREDICTED: hypothetical protein [Homo sapiens]
Length = 121
Score = 254 bits (648), Expect = 1e-68
Identities = 121/121 (100%), Positives = 121/121 (100%)
Query: 1 MTRMLRPVSCASCSRMWRVGLGVAAKAAFSVSSCLALMVVRGPRRLAPRFWSSFSLLPAS 60
MTRMLRPVSCASCSRMWRVGLGVAAKAAFSVSSCLALMVVRGPRRLAPRFWSSFSLLPAS
Sbjct: 1 MTRMLRPVSCASCSRMWRVGLGVAAKAAFSVSSCLALMVVRGPRRLAPRFWSSFSLLPAS 60
Query: 61 LSDTLALSESLASSCDGSWESGDKLGSLPVELGPHPSEGCSLWQHCCYLGNPLCRRTYSR 120
LSDTLALSESLASSCDGSWESGDKLGSLPVELGPHPSEGCSLWQHCCYLGNPLCRRTYSR
Sbjct: 61 LSDTLALSESLASSCDGSWESGDKLGSLPVELGPHPSEGCSLWQHCCYLGNPLCRRTYSR 120
Query: 121 R 121
R
Sbjct: 121 R 121
>gi|239751282 PREDICTED: hypothetical protein XP_002347785 [Homo
sapiens]
Length = 121
Score = 254 bits (648), Expect = 1e-68
Identities = 121/121 (100%), Positives = 121/121 (100%)
Query: 1 MTRMLRPVSCASCSRMWRVGLGVAAKAAFSVSSCLALMVVRGPRRLAPRFWSSFSLLPAS 60
MTRMLRPVSCASCSRMWRVGLGVAAKAAFSVSSCLALMVVRGPRRLAPRFWSSFSLLPAS
Sbjct: 1 MTRMLRPVSCASCSRMWRVGLGVAAKAAFSVSSCLALMVVRGPRRLAPRFWSSFSLLPAS 60
Query: 61 LSDTLALSESLASSCDGSWESGDKLGSLPVELGPHPSEGCSLWQHCCYLGNPLCRRTYSR 120
LSDTLALSESLASSCDGSWESGDKLGSLPVELGPHPSEGCSLWQHCCYLGNPLCRRTYSR
Sbjct: 61 LSDTLALSESLASSCDGSWESGDKLGSLPVELGPHPSEGCSLWQHCCYLGNPLCRRTYSR 120
Query: 121 R 121
R
Sbjct: 121 R 121
>gi|239745777 PREDICTED: hypothetical protein XP_002343552 [Homo
sapiens]
Length = 121
Score = 254 bits (648), Expect = 1e-68
Identities = 121/121 (100%), Positives = 121/121 (100%)
Query: 1 MTRMLRPVSCASCSRMWRVGLGVAAKAAFSVSSCLALMVVRGPRRLAPRFWSSFSLLPAS 60
MTRMLRPVSCASCSRMWRVGLGVAAKAAFSVSSCLALMVVRGPRRLAPRFWSSFSLLPAS
Sbjct: 1 MTRMLRPVSCASCSRMWRVGLGVAAKAAFSVSSCLALMVVRGPRRLAPRFWSSFSLLPAS 60
Query: 61 LSDTLALSESLASSCDGSWESGDKLGSLPVELGPHPSEGCSLWQHCCYLGNPLCRRTYSR 120
LSDTLALSESLASSCDGSWESGDKLGSLPVELGPHPSEGCSLWQHCCYLGNPLCRRTYSR
Sbjct: 61 LSDTLALSESLASSCDGSWESGDKLGSLPVELGPHPSEGCSLWQHCCYLGNPLCRRTYSR 120
Query: 121 R 121
R
Sbjct: 121 R 121
>gi|239744733 PREDICTED: hypothetical protein XP_002343257 [Homo
sapiens]
Length = 659
Score = 119 bits (297), Expect = 7e-28
Identities = 61/77 (79%), Positives = 63/77 (81%)
Query: 12 SCSRMWRVGLGVAAKAAFSVSSCLALMVVRGPRRLAPRFWSSFSLLPASLSDTLALSESL 71
SCSRMWRVGLGVAAKAA SVSSCLALMVVRGPRRL P F SSFSLL SLSD + LS SL
Sbjct: 179 SCSRMWRVGLGVAAKAALSVSSCLALMVVRGPRRLVPEFCSSFSLLAVSLSDEVELSVSL 238
Query: 72 ASSCDGSWESGDKLGSL 88
SSC SW SGDKL S+
Sbjct: 239 GSSCSASWRSGDKLRSV 255
>gi|239753106 PREDICTED: similar to hCG1817845 [Homo sapiens]
Length = 1090
Score = 30.4 bits (67), Expect = 0.33
Identities = 23/67 (34%), Positives = 30/67 (44%), Gaps = 6/67 (8%)
Query: 42 GPRRLAP---RFWSSFSLLPASLSDTLALSESLASSCDGSWESGDKLGSLPVELGPHPSE 98
GPR P + + F LL + SDT AL + + G G L V P +
Sbjct: 267 GPRATGPAQPKIQARFLLLQSHHSDTRALPTDTGTLTIPAPTRGSDTGMLTV---PATTR 323
Query: 99 GCSLWQH 105
GCSL+QH
Sbjct: 324 GCSLFQH 330
>gi|30089935 transmembrane protein 132A isoform a [Homo sapiens]
Length = 1024
Score = 28.9 bits (63), Expect = 0.97
Identities = 26/91 (28%), Positives = 41/91 (45%), Gaps = 17/91 (18%)
Query: 32 SSCLALMVVRGPRR-LAPRFWSSFS---LLPASLSDTLALSESLASSCDGSW----ESGD 83
++C A + P++ +A W SFS + PA L D L S+++ G+ E G
Sbjct: 664 ATCWAQSALPAPKQEVALSLWLSFSDHTVAPAELYDRRDLGLSVSAEEPGAILPAEEQGA 723
Query: 84 KLG---------SLPVELGPHPSEGCSLWQH 105
+LG LP+ + HP E C +H
Sbjct: 724 QLGVVVSGAGAEGLPLHVALHPPEPCRRGRH 754
>gi|30089937 transmembrane protein 132A isoform b [Homo sapiens]
Length = 1023
Score = 28.9 bits (63), Expect = 0.97
Identities = 26/91 (28%), Positives = 41/91 (45%), Gaps = 17/91 (18%)
Query: 32 SSCLALMVVRGPRR-LAPRFWSSFS---LLPASLSDTLALSESLASSCDGSW----ESGD 83
++C A + P++ +A W SFS + PA L D L S+++ G+ E G
Sbjct: 663 ATCWAQSALPAPKQEVALSLWLSFSDHTVAPAELYDRRDLGLSVSAEEPGAILPAEEQGA 722
Query: 84 KLG---------SLPVELGPHPSEGCSLWQH 105
+LG LP+ + HP E C +H
Sbjct: 723 QLGVVVSGAGAEGLPLHVALHPPEPCRRGRH 753
>gi|20127386 l-myc-1 proto-oncogene isoform 2 [Homo sapiens]
Length = 206
Score = 26.9 bits (58), Expect = 3.7
Identities = 20/62 (32%), Positives = 27/62 (43%), Gaps = 11/62 (17%)
Query: 51 WSSFSL---LPASLSDTLALSE--------SLASSCDGSWESGDKLGSLPVELGPHPSEG 99
WS FS L ++SD LA S A C S E+G+ + P LG ++
Sbjct: 96 WSGFSARERLERAVSDRLAPGAPRGNPPKASAAPDCTPSLEAGNPAPAAPCPLGEPKTQA 155
Query: 100 CS 101
CS
Sbjct: 156 CS 157
>gi|74315997 l-myc-1 proto-oncogene isoform 1 [Homo sapiens]
Length = 364
Score = 26.9 bits (58), Expect = 3.7
Identities = 20/62 (32%), Positives = 27/62 (43%), Gaps = 11/62 (17%)
Query: 51 WSSFSL---LPASLSDTLALSE--------SLASSCDGSWESGDKLGSLPVELGPHPSEG 99
WS FS L ++SD LA S A C S E+G+ + P LG ++
Sbjct: 96 WSGFSARERLERAVSDRLAPGAPRGNPPKASAAPDCTPSLEAGNPAPAAPCPLGEPKTQA 155
Query: 100 CS 101
CS
Sbjct: 156 CS 157
>gi|74315995 l-myc-1 proto-oncogene isoform 1 [Homo sapiens]
Length = 364
Score = 26.9 bits (58), Expect = 3.7
Identities = 20/62 (32%), Positives = 27/62 (43%), Gaps = 11/62 (17%)
Query: 51 WSSFSL---LPASLSDTLALSE--------SLASSCDGSWESGDKLGSLPVELGPHPSEG 99
WS FS L ++SD LA S A C S E+G+ + P LG ++
Sbjct: 96 WSGFSARERLERAVSDRLAPGAPRGNPPKASAAPDCTPSLEAGNPAPAAPCPLGEPKTQA 155
Query: 100 CS 101
CS
Sbjct: 156 CS 157
>gi|62122917 filaggrin family member 2 [Homo sapiens]
Length = 2391
Score = 26.6 bits (57), Expect = 4.8
Identities = 11/32 (34%), Positives = 15/32 (46%)
Query: 74 SCDGSWESGDKLGSLPVELGPHPSEGCSLWQH 105
+C G W +G S + G S+ CS QH
Sbjct: 365 NCGGQWRTGSSQSSCCGQYGSGGSQSCSNGQH 396
>gi|187608363 cell adhesion molecule 3 isoform 2 [Homo sapiens]
Length = 398
Score = 26.6 bits (57), Expect = 4.8
Identities = 11/20 (55%), Positives = 12/20 (60%)
Query: 94 PHPSEGCSLWQHCCYLGNPL 113
PHP EG L HC GNP+
Sbjct: 242 PHPREGQKLLLHCEGRGNPV 261
>gi|11056046 cell adhesion molecule 3 isoform 1 [Homo sapiens]
Length = 432
Score = 26.6 bits (57), Expect = 4.8
Identities = 11/20 (55%), Positives = 12/20 (60%)
Query: 94 PHPSEGCSLWQHCCYLGNPL 113
PHP EG L HC GNP+
Sbjct: 276 PHPREGQKLLLHCEGRGNPV 295
>gi|94538343 sialic acid binding Ig-like lectin 8 [Homo sapiens]
Length = 499
Score = 26.2 bits (56), Expect = 6.3
Identities = 23/94 (24%), Positives = 40/94 (42%), Gaps = 7/94 (7%)
Query: 6 RPVSCASCSRMWRVGLGVAAKAAFSVSSCLALMVVRGPRRLAPRFWSSFSLLPASLSDTL 65
RPVS + + + G A A +S C+ ++VR R+ + R + + + D
Sbjct: 354 RPVSQVTLAAVG----GAGATALAFLSFCIIFIIVRSCRKKSAR--PAAGVGDTGMEDAK 407
Query: 66 ALSESLASS-CDGSWESGDKLGSLPVELGPHPSE 98
A+ S + SW+ G+ L P + P E
Sbjct: 408 AIRGSASQGPLTESWKDGNPLKKPPPAVAPSSGE 441
>gi|64368880 zinc finger and SCAN domain containing 25 [Homo
sapiens]
Length = 544
Score = 26.2 bits (56), Expect = 6.3
Identities = 13/27 (48%), Positives = 16/27 (59%), Gaps = 2/27 (7%)
Query: 75 CDGSWESGDKLGSLPV--ELGPHPSEG 99
C G+WE G +LG + V E G P EG
Sbjct: 144 CRGAWEPGIQLGPVEVKPEWGMPPGEG 170
>gi|59806361 hypothetical protein LOC387104 [Homo sapiens]
Length = 947
Score = 25.8 bits (55), Expect = 8.2
Identities = 14/44 (31%), Positives = 19/44 (43%)
Query: 55 SLLPASLSDTLALSESLASSCDGSWESGDKLGSLPVELGPHPSE 98
+L AS S A +E S +GS G + P PHP +
Sbjct: 302 TLAVASASPMAAAAEGPQQSAEGSASGGGMQAAAPPSSQPHPQQ 345
>gi|169208819 PREDICTED: similar to kinase D-interacting substrate
220 [Homo sapiens]
Length = 380
Score = 25.8 bits (55), Expect = 8.2
Identities = 15/42 (35%), Positives = 18/42 (42%), Gaps = 7/42 (16%)
Query: 65 LALSESLASSCDGSWESGD-------KLGSLPVELGPHPSEG 99
+AL S SS G W S + L P+ L PHP G
Sbjct: 278 MALPNSPQSSGTGRWRSQEVLEGAPPTLAQAPIGLSPHPEGG 319
>gi|169208593 PREDICTED: similar to kinase D-interacting substrate
220 [Homo sapiens]
Length = 380
Score = 25.8 bits (55), Expect = 8.2
Identities = 15/42 (35%), Positives = 18/42 (42%), Gaps = 7/42 (16%)
Query: 65 LALSESLASSCDGSWESGD-------KLGSLPVELGPHPSEG 99
+AL S SS G W S + L P+ L PHP G
Sbjct: 278 MALPNSPQSSGTGRWRSQEVLEGAPPTLAQAPIGLSPHPEGG 319
>gi|169208169 PREDICTED: similar to kinase D-interacting substrate
220 [Homo sapiens]
Length = 380
Score = 25.8 bits (55), Expect = 8.2
Identities = 15/42 (35%), Positives = 18/42 (42%), Gaps = 7/42 (16%)
Query: 65 LALSESLASSCDGSWESGD-------KLGSLPVELGPHPSEG 99
+AL S SS G W S + L P+ L PHP G
Sbjct: 278 MALPNSPQSSGTGRWRSQEVLEGAPPTLAQAPIGLSPHPEGG 319
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.323 0.133 0.443
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,438,236
Number of Sequences: 37866
Number of extensions: 231051
Number of successful extensions: 800
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 790
Number of HSP's gapped (non-prelim): 24
length of query: 121
length of database: 18,247,518
effective HSP length: 89
effective length of query: 32
effective length of database: 14,877,444
effective search space: 476078208
effective search space used: 476078208
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.