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Search of human proteins with 239745758
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239745758 PREDICTED: hypothetical protein XP_002343547 [Homo
sapiens]
(146 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239756774 PREDICTED: hypothetical protein [Homo sapiens] 302 8e-83
gi|239751265 PREDICTED: hypothetical protein [Homo sapiens] 302 8e-83
gi|239745758 PREDICTED: hypothetical protein XP_002343547 [Homo ... 302 8e-83
gi|38327539 inositol polyphosphate-5-phosphatase E [Homo sapiens] 39 0.002
gi|239750958 PREDICTED: hypothetical protein XP_002347630 [Homo ... 38 0.003
gi|239745364 PREDICTED: hypothetical protein XP_002343480 [Homo ... 38 0.003
gi|169169586 PREDICTED: hypothetical protein [Homo sapiens] 37 0.005
gi|209977080 REST corepressor 3 isoform a [Homo sapiens] 37 0.005
gi|8922733 REST corepressor 3 isoform d [Homo sapiens] 37 0.005
gi|239747236 PREDICTED: leucine rich repeat containing 38 [Homo ... 36 0.013
gi|239741057 PREDICTED: leucine rich repeat containing 38 [Homo ... 36 0.013
gi|148237270 hypermethylated in cancer 1 isoform 2 [Homo sapiens] 36 0.013
gi|61676186 hypermethylated in cancer 1 isoform 1 [Homo sapiens] 36 0.013
gi|20127580 BTB (POZ) domain containing 2 [Homo sapiens] 36 0.013
gi|239753839 PREDICTED: hypothetical protein [Homo sapiens] 35 0.017
gi|46367787 poly(A) binding protein, cytoplasmic 1 [Homo sapiens] 35 0.017
gi|24586659 scavenger receptor class F, member 2 isoform 1 [Homo... 35 0.017
gi|33598937 scavenger receptor class F, member 2 isoform 2 [Homo... 35 0.017
gi|239750867 PREDICTED: hypothetical protein XP_002347588 [Homo ... 35 0.029
gi|7656967 cadherin EGF LAG seven-pass G-type receptor 1 [Homo s... 35 0.029
gi|239748932 PREDICTED: hypothetical protein XP_002346861 [Homo ... 34 0.039
gi|118582284 msh homeobox 1 [Homo sapiens] 34 0.050
gi|148806908 fibronectin type III domain containing 1 [Homo sapi... 34 0.050
gi|217416343 fibrosin-like 1 [Homo sapiens] 34 0.050
gi|169202970 PREDICTED: hypothetical protein [Homo sapiens] 33 0.066
gi|169203510 PREDICTED: hypothetical protein [Homo sapiens] 33 0.066
gi|239748337 PREDICTED: hypothetical protein XP_002346632 [Homo ... 33 0.066
gi|61097912 nucleolar protein with MIF4G domain 1 [Homo sapiens] 33 0.066
gi|116734706 interferon regulatory factor 2 binding protein 2 is... 33 0.066
gi|116734704 interferon regulatory factor 2 binding protein 2 is... 33 0.066
>gi|239756774 PREDICTED: hypothetical protein [Homo sapiens]
Length = 146
Score = 302 bits (773), Expect = 8e-83
Identities = 146/146 (100%), Positives = 146/146 (100%)
Query: 1 MKGDCKCPRTPALGKPLCWERLSSGRKRSFGKGGRSGSFSPLGRPLSNQQGGKPPQCSAS 60
MKGDCKCPRTPALGKPLCWERLSSGRKRSFGKGGRSGSFSPLGRPLSNQQGGKPPQCSAS
Sbjct: 1 MKGDCKCPRTPALGKPLCWERLSSGRKRSFGKGGRSGSFSPLGRPLSNQQGGKPPQCSAS 60
Query: 61 AAPSPPGSAPRAVHVAEVAASRRGEEPHATVAGPRPSLRALAFRAAVRRGREEGSPARAL 120
AAPSPPGSAPRAVHVAEVAASRRGEEPHATVAGPRPSLRALAFRAAVRRGREEGSPARAL
Sbjct: 61 AAPSPPGSAPRAVHVAEVAASRRGEEPHATVAGPRPSLRALAFRAAVRRGREEGSPARAL 120
Query: 121 DPARGLQQPPLQHSSTVSWLSAVGPQ 146
DPARGLQQPPLQHSSTVSWLSAVGPQ
Sbjct: 121 DPARGLQQPPLQHSSTVSWLSAVGPQ 146
>gi|239751265 PREDICTED: hypothetical protein [Homo sapiens]
Length = 146
Score = 302 bits (773), Expect = 8e-83
Identities = 146/146 (100%), Positives = 146/146 (100%)
Query: 1 MKGDCKCPRTPALGKPLCWERLSSGRKRSFGKGGRSGSFSPLGRPLSNQQGGKPPQCSAS 60
MKGDCKCPRTPALGKPLCWERLSSGRKRSFGKGGRSGSFSPLGRPLSNQQGGKPPQCSAS
Sbjct: 1 MKGDCKCPRTPALGKPLCWERLSSGRKRSFGKGGRSGSFSPLGRPLSNQQGGKPPQCSAS 60
Query: 61 AAPSPPGSAPRAVHVAEVAASRRGEEPHATVAGPRPSLRALAFRAAVRRGREEGSPARAL 120
AAPSPPGSAPRAVHVAEVAASRRGEEPHATVAGPRPSLRALAFRAAVRRGREEGSPARAL
Sbjct: 61 AAPSPPGSAPRAVHVAEVAASRRGEEPHATVAGPRPSLRALAFRAAVRRGREEGSPARAL 120
Query: 121 DPARGLQQPPLQHSSTVSWLSAVGPQ 146
DPARGLQQPPLQHSSTVSWLSAVGPQ
Sbjct: 121 DPARGLQQPPLQHSSTVSWLSAVGPQ 146
>gi|239745758 PREDICTED: hypothetical protein XP_002343547 [Homo
sapiens]
Length = 146
Score = 302 bits (773), Expect = 8e-83
Identities = 146/146 (100%), Positives = 146/146 (100%)
Query: 1 MKGDCKCPRTPALGKPLCWERLSSGRKRSFGKGGRSGSFSPLGRPLSNQQGGKPPQCSAS 60
MKGDCKCPRTPALGKPLCWERLSSGRKRSFGKGGRSGSFSPLGRPLSNQQGGKPPQCSAS
Sbjct: 1 MKGDCKCPRTPALGKPLCWERLSSGRKRSFGKGGRSGSFSPLGRPLSNQQGGKPPQCSAS 60
Query: 61 AAPSPPGSAPRAVHVAEVAASRRGEEPHATVAGPRPSLRALAFRAAVRRGREEGSPARAL 120
AAPSPPGSAPRAVHVAEVAASRRGEEPHATVAGPRPSLRALAFRAAVRRGREEGSPARAL
Sbjct: 61 AAPSPPGSAPRAVHVAEVAASRRGEEPHATVAGPRPSLRALAFRAAVRRGREEGSPARAL 120
Query: 121 DPARGLQQPPLQHSSTVSWLSAVGPQ 146
DPARGLQQPPLQHSSTVSWLSAVGPQ
Sbjct: 121 DPARGLQQPPLQHSSTVSWLSAVGPQ 146
>gi|38327539 inositol polyphosphate-5-phosphatase E [Homo sapiens]
Length = 644
Score = 38.9 bits (89), Expect = 0.002
Identities = 35/101 (34%), Positives = 42/101 (41%), Gaps = 14/101 (13%)
Query: 41 PLGRPLSNQQGGKPPQCSASAAPSPPGSAPRAVHVAEVAASRRGEEPHATVA--GPRP-- 96
P GR L Q G PP A + P PGS A+ A+ GE+P A A PRP
Sbjct: 18 PEGRTLQGQLPGAPPAQRAGSPPDAPGSESPAL-ACSTPATPSGEDPPARAAPIAPRPPA 76
Query: 97 --------SLRALAFRAAVRRGREEGSPAR-ALDPARGLQQ 128
SL +R RG +E AR P+RG Q
Sbjct: 77 RPRLERALSLDDKGWRRRRFRGSQEDLEARNGTSPSRGSVQ 117
>gi|239750958 PREDICTED: hypothetical protein XP_002347630 [Homo
sapiens]
Length = 229
Score = 38.1 bits (87), Expect = 0.003
Identities = 37/113 (32%), Positives = 49/113 (43%), Gaps = 18/113 (15%)
Query: 32 KGGRSGSFSPLGRPLSNQQGGKPPQCSASAAPSPPGSAPRAVHVAEVAASRRGEEPHATV 91
+G +G SP P S +G PP+ + +A P G + A V+A +
Sbjct: 40 QGRPAGGASPPPSPRSRPEGPGPPRPATPSARRPQGLS------AGVSAGPAQRSRPLQL 93
Query: 92 AGPRPSLRALAFRAAVRRGR-EEGSPARALDPARGLQQPPLQHSSTVSWLSAV 143
AGPR A A A R GR G PA P+RG PL+ V+W AV
Sbjct: 94 AGPRDRAPARALHARTRMGRAARGPPA----PSRG----PLKR---VTWTCAV 135
>gi|239745364 PREDICTED: hypothetical protein XP_002343480 [Homo
sapiens]
Length = 229
Score = 38.1 bits (87), Expect = 0.003
Identities = 37/113 (32%), Positives = 49/113 (43%), Gaps = 18/113 (15%)
Query: 32 KGGRSGSFSPLGRPLSNQQGGKPPQCSASAAPSPPGSAPRAVHVAEVAASRRGEEPHATV 91
+G +G SP P S +G PP+ + +A P G + A V+A +
Sbjct: 40 QGRPAGGASPPPSPRSRPEGPGPPRPATPSARRPQGLS------AGVSAGPAQRSRPLQL 93
Query: 92 AGPRPSLRALAFRAAVRRGR-EEGSPARALDPARGLQQPPLQHSSTVSWLSAV 143
AGPR A A A R GR G PA P+RG PL+ V+W AV
Sbjct: 94 AGPRDRAPARALHARTRMGRAARGPPA----PSRG----PLKR---VTWTCAV 135
>gi|169169586 PREDICTED: hypothetical protein [Homo sapiens]
Length = 251
Score = 37.4 bits (85), Expect = 0.005
Identities = 31/105 (29%), Positives = 41/105 (39%), Gaps = 2/105 (1%)
Query: 41 PLGRPLSNQQGGKPPQCSASAAPSPPGSAPRAVHVAEVAASRRGEEPHATVAGP-RPSLR 99
PL P + P +A A PSPP +A A G AT G +PS+R
Sbjct: 42 PLCAPRPAPGRAQSPVPAAGAVPSPPAAAHPARPALRGETPAPGRRGRATTRGEVQPSVR 101
Query: 100 -ALAFRAAVRRGREEGSPARALDPARGLQQPPLQHSSTVSWLSAV 143
L+ R G G P + P + PP +WLSA+
Sbjct: 102 PPLSHRPLRGGGMGRGRPGKGPPPNPSRRLPPAPPGGRRTWLSAL 146
>gi|209977080 REST corepressor 3 isoform a [Homo sapiens]
Length = 553
Score = 37.4 bits (85), Expect = 0.005
Identities = 31/110 (28%), Positives = 44/110 (40%), Gaps = 12/110 (10%)
Query: 23 SSGRKRSFGKGGRSGSFSPLGRPLSNQQGGKPPQCSASAAPSPPGSAPRAVHVAEVAASR 82
S+G + G+ +S S P G+ ++ + PQ + PSPP + A
Sbjct: 411 SNGDASTLGEETKSASNVPSGKSTDEEEEAQTPQAPRTLGPSPPAPSSTPTPTA------ 464
Query: 83 RGEEPHATVAGPRPSLRAL--AFRAAVRRGREEGSPARALDPARGLQQPP 130
P AT+ P P LR A A R+ AR + P L QPP
Sbjct: 465 ----PIATLNQPPPLLRPTLPAAPALHRQPPPLQQQARFIQPRPTLNQPP 510
>gi|8922733 REST corepressor 3 isoform d [Homo sapiens]
Length = 495
Score = 37.4 bits (85), Expect = 0.005
Identities = 31/110 (28%), Positives = 44/110 (40%), Gaps = 12/110 (10%)
Query: 23 SSGRKRSFGKGGRSGSFSPLGRPLSNQQGGKPPQCSASAAPSPPGSAPRAVHVAEVAASR 82
S+G + G+ +S S P G+ ++ + PQ + PSPP + A
Sbjct: 353 SNGDASTLGEETKSASNVPSGKSTDEEEEAQTPQAPRTLGPSPPAPSSTPTPTA------ 406
Query: 83 RGEEPHATVAGPRPSLRAL--AFRAAVRRGREEGSPARALDPARGLQQPP 130
P AT+ P P LR A A R+ AR + P L QPP
Sbjct: 407 ----PIATLNQPPPLLRPTLPAAPALHRQPPPLQQQARFIQPRPTLNQPP 452
>gi|239747236 PREDICTED: leucine rich repeat containing 38 [Homo
sapiens]
Length = 408
Score = 35.8 bits (81), Expect = 0.013
Identities = 38/123 (30%), Positives = 44/123 (35%), Gaps = 25/123 (20%)
Query: 33 GGRSGSFSPLGRPLSN---------QQGGKPPQCSASAAPS-----PPGSAPRAVHVAEV 78
G S L RP+S + G +PP+ AP P + PR + E
Sbjct: 43 GAHEMSSRSLARPVSPSAPRSIAPARPGARPPRPGRPLAPRARQPVPHRAVPRQGSLREP 102
Query: 79 AASRRGEEPHATVAGPRPSLR-----------ALAFRAAVRRGREEGSPARALDPARGLQ 127
SRRG A P PSLR A RA V RG PA P RGL
Sbjct: 103 LPSRRGRRGPPGHAPPSPSLRRRGARALQPSAAARARARVPRGLRLHRPAHRGLPRRGLP 162
Query: 128 QPP 130
P
Sbjct: 163 SVP 165
>gi|239741057 PREDICTED: leucine rich repeat containing 38 [Homo
sapiens]
Length = 408
Score = 35.8 bits (81), Expect = 0.013
Identities = 38/123 (30%), Positives = 44/123 (35%), Gaps = 25/123 (20%)
Query: 33 GGRSGSFSPLGRPLSN---------QQGGKPPQCSASAAPS-----PPGSAPRAVHVAEV 78
G S L RP+S + G +PP+ AP P + PR + E
Sbjct: 43 GAHEMSSRSLARPVSPSAPRSIAPARPGARPPRPGRPLAPRARQPVPHRAVPRQGSLREP 102
Query: 79 AASRRGEEPHATVAGPRPSLR-----------ALAFRAAVRRGREEGSPARALDPARGLQ 127
SRRG A P PSLR A RA V RG PA P RGL
Sbjct: 103 LPSRRGRRGPPGHAPPSPSLRRRGARALQPSAAARARARVPRGLRLHRPAHRGLPRRGLP 162
Query: 128 QPP 130
P
Sbjct: 163 SVP 165
>gi|148237270 hypermethylated in cancer 1 isoform 2 [Homo sapiens]
Length = 733
Score = 35.8 bits (81), Expect = 0.013
Identities = 35/121 (28%), Positives = 48/121 (39%), Gaps = 6/121 (4%)
Query: 17 LCWERLSSGRKRSF--GKGGRSGSFSPLGRPLSNQQGGKP--PQCSASAAPSPPGSAPRA 72
LC +RL K G GG G ++P GRP + P C S PP A
Sbjct: 144 LCKKRLKRHGKYCHLRGGGGGGGGYAPYGRPGRGLRAATPVIQACYPSPVGPPPPPAAEP 203
Query: 73 VHVAEVAASRRGEEPHATVAGPRPSLRALAFRAAVRRGRE--EGSPARALDPARGLQQPP 130
E A + E +A+ GP +L A R + G + + SP + P R L +
Sbjct: 204 PSGPEAAVNTHCAELYASGPGPAAALCASERRCSPLCGLDLSKKSPPGSAAPERPLAERE 263
Query: 131 L 131
L
Sbjct: 264 L 264
>gi|61676186 hypermethylated in cancer 1 isoform 1 [Homo sapiens]
Length = 714
Score = 35.8 bits (81), Expect = 0.013
Identities = 35/121 (28%), Positives = 48/121 (39%), Gaps = 6/121 (4%)
Query: 17 LCWERLSSGRKRSF--GKGGRSGSFSPLGRPLSNQQGGKP--PQCSASAAPSPPGSAPRA 72
LC +RL K G GG G ++P GRP + P C S PP A
Sbjct: 125 LCKKRLKRHGKYCHLRGGGGGGGGYAPYGRPGRGLRAATPVIQACYPSPVGPPPPPAAEP 184
Query: 73 VHVAEVAASRRGEEPHATVAGPRPSLRALAFRAAVRRGRE--EGSPARALDPARGLQQPP 130
E A + E +A+ GP +L A R + G + + SP + P R L +
Sbjct: 185 PSGPEAAVNTHCAELYASGPGPAAALCASERRCSPLCGLDLSKKSPPGSAAPERPLAERE 244
Query: 131 L 131
L
Sbjct: 245 L 245
>gi|20127580 BTB (POZ) domain containing 2 [Homo sapiens]
Length = 525
Score = 35.8 bits (81), Expect = 0.013
Identities = 30/89 (33%), Positives = 36/89 (40%), Gaps = 7/89 (7%)
Query: 31 GKGGRSGSFSPLGRPLSNQQGGKPPQCSASAAPSPPGSAPRAVHVAEVAASRRGEEPHAT 90
G GGR+ P G + GG P + +AA PG+A A A AA+ G P A
Sbjct: 5 GSGGRASC--PPGVGVGPGTGGSPGPSANAAATPAPGNAAAAAAAAAAAAAAPGPTPPAP 62
Query: 91 VAGPRPSLRALAFRAAVRRGREEGSPARA 119
P P A A A R E P A
Sbjct: 63 ---PGPGTDAQA--AGAERAEEAAGPGAA 86
>gi|239753839 PREDICTED: hypothetical protein [Homo sapiens]
Length = 257
Score = 35.4 bits (80), Expect = 0.017
Identities = 39/134 (29%), Positives = 49/134 (36%), Gaps = 18/134 (13%)
Query: 29 SFGKGGRSGSFSPLGRPLSNQQGGKPPQCSASAA--PSPPGSAPRAVHVAEVAASRRGEE 86
S G G+ PL P + G P + S +A P G RA AA+RR
Sbjct: 62 SAGSQEHPGAGGPLCFPARSAAWGPPARASRAAGRRAGPAGPPCRAPGRGRAAATRRSPA 121
Query: 87 PHATVAGPRPSLRALAFRAAVRRGREEGSPARALDP----------ARGLQQP-----PL 131
P P RA AA G PAR L P +R L++P P
Sbjct: 122 PGTARGSPAGVERAGGATAASSAG-TRSVPARRLPPPCGGTSLGAGSRALRRPGSAALPR 180
Query: 132 QHSSTVSWLSAVGP 145
SS+ W + GP
Sbjct: 181 SPSSSRRWAAMPGP 194
>gi|46367787 poly(A) binding protein, cytoplasmic 1 [Homo sapiens]
Length = 636
Score = 35.4 bits (80), Expect = 0.017
Identities = 36/122 (29%), Positives = 48/122 (39%), Gaps = 20/122 (16%)
Query: 45 PLSNQQGGKP------PQCSASAAPSPPGSA--PRAVHVAEVAASRRGEEPHATVAGPRP 96
P QG +P P AAP PP S P + V V +++R GPRP
Sbjct: 435 PRWTAQGARPHPFQNMPGAIRPAAPRPPFSTMRPASSQVPRVMSTQRVANTSTQTMGPRP 494
Query: 97 SLRALAFRAAVRRGREEGSPARALDPARGL--------QQPPL----QHSSTVSWLSAVG 144
+ A A AVR + A +P + L QQP + Q T S L++
Sbjct: 495 AAAAAAATPAVRTVPQYKYAAGVRNPQQHLNAQPQVTMQQPAVHVQGQEPLTASMLASAP 554
Query: 145 PQ 146
PQ
Sbjct: 555 PQ 556
>gi|24586659 scavenger receptor class F, member 2 isoform 1 [Homo
sapiens]
Length = 870
Score = 35.4 bits (80), Expect = 0.017
Identities = 33/105 (31%), Positives = 47/105 (44%), Gaps = 15/105 (14%)
Query: 40 SPLGRPLSNQQGGKPPQCSASAAPSPPGSAPRA------VHVAEVAASRRGEEPHATVAG 93
SP R + + G P + +A AAPSPP + RA H + ++R E A
Sbjct: 718 SPRTRDPTPRPPGLPEEATALAAPSPPRARARAAPRPLGAHGRRRSPAKRAEAASMLAAD 777
Query: 94 PRPSLRALAFRAAVRRG----REEGSP----ARALDPARGLQQPP 130
R R+L RA V G RE+ +P R++ PA + PP
Sbjct: 778 VRGKTRSLG-RAEVALGAQGPREKPAPPQKAKRSVPPASPARAPP 821
Score = 31.2 bits (69), Expect = 0.33
Identities = 30/105 (28%), Positives = 45/105 (42%), Gaps = 12/105 (11%)
Query: 45 PLSNQQGGKPPQCSASAAPSP-----PGSAPRAVHVAEVAASRRGEEPHATVAGPRPSLR 99
P ++ P + + APSP P SA A+ + AS E ++V GP +L
Sbjct: 572 PAESRDPEVPTVPAEAPAPSPVPLTTPASAEEAI---PLPASSDSERSASSVEGPGGALY 628
Query: 100 ALAFRAAVRRGREEGS-PARALDPARGLQQPPLQHSST---VSWL 140
A R R R G +L P+ ++PP +T VSW+
Sbjct: 629 ARVARREARPARARGEIGGLSLSPSPERRKPPPPDPATKPKVSWI 673
>gi|33598937 scavenger receptor class F, member 2 isoform 2 [Homo
sapiens]
Length = 865
Score = 35.4 bits (80), Expect = 0.017
Identities = 33/105 (31%), Positives = 47/105 (44%), Gaps = 15/105 (14%)
Query: 40 SPLGRPLSNQQGGKPPQCSASAAPSPPGSAPRA------VHVAEVAASRRGEEPHATVAG 93
SP R + + G P + +A AAPSPP + RA H + ++R E A
Sbjct: 713 SPRTRDPTPRPPGLPEEATALAAPSPPRARARAAPRPLGAHGRRRSPAKRAEAASMLAAD 772
Query: 94 PRPSLRALAFRAAVRRG----REEGSP----ARALDPARGLQQPP 130
R R+L RA V G RE+ +P R++ PA + PP
Sbjct: 773 VRGKTRSLG-RAEVALGAQGPREKPAPPQKAKRSVPPASPARAPP 816
Score = 31.2 bits (69), Expect = 0.33
Identities = 30/105 (28%), Positives = 45/105 (42%), Gaps = 12/105 (11%)
Query: 45 PLSNQQGGKPPQCSASAAPSP-----PGSAPRAVHVAEVAASRRGEEPHATVAGPRPSLR 99
P ++ P + + APSP P SA A+ + AS E ++V GP +L
Sbjct: 567 PAESRDPEVPTVPAEAPAPSPVPLTTPASAEEAI---PLPASSDSERSASSVEGPGGALY 623
Query: 100 ALAFRAAVRRGREEGS-PARALDPARGLQQPPLQHSST---VSWL 140
A R R R G +L P+ ++PP +T VSW+
Sbjct: 624 ARVARREARPARARGEIGGLSLSPSPERRKPPPPDPATKPKVSWI 668
>gi|239750867 PREDICTED: hypothetical protein XP_002347588 [Homo
sapiens]
Length = 800
Score = 34.7 bits (78), Expect = 0.029
Identities = 34/131 (25%), Positives = 47/131 (35%), Gaps = 24/131 (18%)
Query: 7 CPRTPAL-------GKPLCWERLSSGRKRSFGKG----------GRSGSFSPL--GRPLS 47
CP P+L G P + L+ G KR G+G G SG + L G PL
Sbjct: 327 CPLPPSLLCLWVESGTPRGRQSLAEGVKRDGGQGLPDVEGAPDMGSSGEGAGLEEGSPLR 386
Query: 48 NQQGGKPPQCSASAAPSPPGSAPRAVHVAEVAASRRGEEPHATVAGPRPSLRALAFRAAV 107
++ PP G + RRG P + GP+ SL +
Sbjct: 387 RERAWPPPSLRTPTPGLTEGGG-----TGLPSKQRRGPSPKTELGGPQGSLGRASLSGPF 441
Query: 108 RRGREEGSPAR 118
G + G P+R
Sbjct: 442 GPGPQGGPPSR 452
>gi|7656967 cadherin EGF LAG seven-pass G-type receptor 1 [Homo
sapiens]
Length = 3014
Score = 34.7 bits (78), Expect = 0.029
Identities = 30/104 (28%), Positives = 42/104 (40%), Gaps = 9/104 (8%)
Query: 5 CKCPRTP---ALGKPLCWERLSSGRKRSFGKGGRSGSFSPLGRPLSNQQGGKPPQCSASA 61
C+CP P G+P+C S R R R+ +G L G P SAS
Sbjct: 156 CRCPPRPRPRCPGRPICLPPGGSVRLRLLCALRRAAGAVRVGLALEAATAGTP---SASP 212
Query: 62 APSP--PGSAPRAVHVAEVAASRRGEEPHATVAGPRPSLRALAF 103
+PSP P + P A +RRG ++ P P+ + F
Sbjct: 213 SPSPPLPPNLPEA-RAGPARRARRGTSGRGSLKFPMPNYQVALF 255
>gi|239748932 PREDICTED: hypothetical protein XP_002346861 [Homo
sapiens]
Length = 162
Score = 34.3 bits (77), Expect = 0.039
Identities = 23/75 (30%), Positives = 34/75 (45%), Gaps = 3/75 (4%)
Query: 12 ALGKPLCWERLSSGRKRSFGKGGRSGSFSPLGRPLSNQQGGKPPQCSASAAPSPPGSAPR 71
A G+ +RLS +R G + P RP ++ GG QC + SP +AP
Sbjct: 80 AAGRGSWLQRLSQHGRRGGGAAPTNKPRGPAPRPSFHRPGGHASQCGLA---SPQSTAPP 136
Query: 72 AVHVAEVAASRRGEE 86
A + +RRGE+
Sbjct: 137 ARRLGTGGLTRRGEK 151
>gi|118582284 msh homeobox 1 [Homo sapiens]
Length = 303
Score = 33.9 bits (76), Expect = 0.050
Identities = 26/87 (29%), Positives = 37/87 (42%), Gaps = 10/87 (11%)
Query: 41 PLGRPLSNQQGGKPPQCSASAAPSPPGSAPRAVHVAEVAASRRGEEPHATVAGPRPSLRA 100
PLG + + GKP A APS A A + A G +P + PSL
Sbjct: 11 PLGVKVEDSAFGKPAGGGAGQAPSAA-----AATAAAMGADEEGAKPKVS-----PSLLP 60
Query: 101 LAFRAAVRRGREEGSPARALDPARGLQ 127
+ A + R+ G+ AL P+ G+Q
Sbjct: 61 FSVEALMADHRKPGAKESALAPSEGVQ 87
>gi|148806908 fibronectin type III domain containing 1 [Homo sapiens]
Length = 1894
Score = 33.9 bits (76), Expect = 0.050
Identities = 27/87 (31%), Positives = 33/87 (37%), Gaps = 17/87 (19%)
Query: 10 TPALGKPLCWERLSSGRKRSFGKGGRSGSFSPLGRPLSNQQGGKPPQCSASAAPSPPGSA 69
TP GK R+ + R GS +P+ RPL P PPGS+
Sbjct: 1208 TPRGGKDADGSLAKEEREPAIALAPRGGSLAPVKRPL----------------PPPPGSS 1251
Query: 70 PRAVHVAEVAASRRGEEPHATVAGPRP 96
PRA HV R + VAG P
Sbjct: 1252 PRASHVPS-RLPPRSAATVSPVAGTHP 1277
Score = 30.0 bits (66), Expect = 0.73
Identities = 31/107 (28%), Positives = 44/107 (41%), Gaps = 13/107 (12%)
Query: 40 SPLGRPLSNQQGG---KPPQCSASAAPS-----PPGSAPRAVHVAEVAASRRGEEPHATV 91
SP +P S + +PP + PS PG AP+ VA S+ P +
Sbjct: 964 SPKAQPGSTDRHASPARPPAARSQQHPSVPRRMTPGRAPQQQPPPPVATSQHHPGPQSRD 1023
Query: 92 AGPRPSLRALAFRAAVR-RGREEGSPARALDP----ARGLQQPPLQH 133
AG PS L+ A R R +G + DP +RG+ LQ+
Sbjct: 1024 AGRSPSQPRLSLTQAGRPRPTSQGRSHSSSDPYTASSRGMLPTALQN 1070
>gi|217416343 fibrosin-like 1 [Homo sapiens]
Length = 1045
Score = 33.9 bits (76), Expect = 0.050
Identities = 38/125 (30%), Positives = 47/125 (37%), Gaps = 14/125 (11%)
Query: 8 PRTPALGKPLCWERLSSGRKRSFGKGGRSGSFSPLGRPLSNQQGGKPPQCSASAAPSPPG 67
P TPA G P+ L + + G+ G R ++ K A SPP
Sbjct: 791 PATPA-GHPVSGLLLRA--QSELGRSGAPAEREAEPRVKESRSPAKEEAAKMPARASPPH 847
Query: 68 S--APRAVHVAEVAASRRGEEPHATVAGPRPSLRALAFRAAVRRGREE-GSPARALDPAR 124
S AP V V E EP A P P L GRE G+P A +P R
Sbjct: 848 SKAAPGDVKVKEERGEDEASEPPAGGLHPAPLQLGL--------GRERLGAPGFAWEPFR 899
Query: 125 GLQQP 129
GL+ P
Sbjct: 900 GLELP 904
>gi|169202970 PREDICTED: hypothetical protein [Homo sapiens]
Length = 190
Score = 33.5 bits (75), Expect = 0.066
Identities = 31/104 (29%), Positives = 40/104 (38%), Gaps = 19/104 (18%)
Query: 41 PLGRPLSNQQGGKPPQCSASAAPSPPGSAPRAVHVAEVAASRRGEEPHATVAGPRPSLRA 100
P PLS+++G PP+ A SPP +AP P + RP R
Sbjct: 40 PPPHPLSSRRGLGPPR----AGGSPPPTAP--------------PTPTGSFPACRPGARF 81
Query: 101 LAFRAAVRRGREEGSPARALDPARGLQQPPLQHSSTVSWLSAVG 144
A R R SPA + D G PP Q S + W + G
Sbjct: 82 GAARCHQSRENRLVSPAES-DKMSGTPLPPPQFSPPLPWSAGAG 124
>gi|169203510 PREDICTED: hypothetical protein [Homo sapiens]
Length = 190
Score = 33.5 bits (75), Expect = 0.066
Identities = 31/104 (29%), Positives = 40/104 (38%), Gaps = 19/104 (18%)
Query: 41 PLGRPLSNQQGGKPPQCSASAAPSPPGSAPRAVHVAEVAASRRGEEPHATVAGPRPSLRA 100
P PLS+++G PP+ A SPP +AP P + RP R
Sbjct: 40 PPPHPLSSRRGLGPPR----AGGSPPPTAP--------------PTPTGSFPACRPGARF 81
Query: 101 LAFRAAVRRGREEGSPARALDPARGLQQPPLQHSSTVSWLSAVG 144
A R R SPA + D G PP Q S + W + G
Sbjct: 82 GAARCHQSRENRLVSPAES-DKMSGTPLPPPQFSPPLPWSAGAG 124
>gi|239748337 PREDICTED: hypothetical protein XP_002346632 [Homo
sapiens]
Length = 189
Score = 33.5 bits (75), Expect = 0.066
Identities = 32/110 (29%), Positives = 39/110 (35%), Gaps = 26/110 (23%)
Query: 26 RKRSFGKGGRSGSFSPLGRPLSN---QQGGKPPQCSASAAPSPPGSAP------------ 70
R G G R GS P GRP N ++ + P ASA+ PP AP
Sbjct: 81 RSAKAGYGLRVGS-GPYGRPRGNAGQEKVWEKPASEASASGRPPELAPARSGAGQGRRPN 139
Query: 71 ----------RAVHVAEVAASRRGEEPHATVAGPRPSLRALAFRAAVRRG 110
R H + A G P + GPRP+L L R G
Sbjct: 140 GGDRQGLGAGRDKHTTDGAGPGEGTGPKKLLPGPRPALSYLRRREGAAAG 189
>gi|61097912 nucleolar protein with MIF4G domain 1 [Homo sapiens]
Length = 860
Score = 33.5 bits (75), Expect = 0.066
Identities = 32/109 (29%), Positives = 45/109 (41%), Gaps = 15/109 (13%)
Query: 23 SSGRKRSFGKGGRSGSFSPLGRPLSNQQGGKPPQCSASAAPSPPGSAPRAVHVAEVAASR 82
++G ++ G GGRSG+ G ++ +P APS S PR + V A
Sbjct: 101 TAGPEQGPGLGGRSGAEEASGHRQDTEERARP-------APSRDPSPPRKPRPSRVKA-- 151
Query: 83 RGEEPHATVAGPRPSLRALAF---RAAVRRGREEGSPARALDPARGLQQ 128
+ A A RPS A A RA + EE R L+ GL +
Sbjct: 152 ---KATAATAKTRPSAAATAAARKRALLAANEEEDREIRKLERCLGLNK 197
>gi|116734706 interferon regulatory factor 2 binding protein 2
isoform B [Homo sapiens]
Length = 571
Score = 33.5 bits (75), Expect = 0.066
Identities = 25/81 (30%), Positives = 35/81 (43%), Gaps = 2/81 (2%)
Query: 50 QGGKPPQCSASAAPSPPGSAPRAVHVAEVAASRRGEEPHATVAGPRPSLRALAFRAAVRR 109
+G PP +ASAA PP + + + + + G P A P+ +L AA R
Sbjct: 68 EGRSPPGAAASAAAKPPPLSAKDILLQQQQQLGHG-GPEAAPRAPQ-ALERYPLAAAAER 125
Query: 110 GREEGSPARALDPARGLQQPP 130
GS + PA L QPP
Sbjct: 126 PPRLGSDFGSSRPAASLAQPP 146
>gi|116734704 interferon regulatory factor 2 binding protein 2
isoform A [Homo sapiens]
Length = 587
Score = 33.5 bits (75), Expect = 0.066
Identities = 25/81 (30%), Positives = 35/81 (43%), Gaps = 2/81 (2%)
Query: 50 QGGKPPQCSASAAPSPPGSAPRAVHVAEVAASRRGEEPHATVAGPRPSLRALAFRAAVRR 109
+G PP +ASAA PP + + + + + G P A P+ +L AA R
Sbjct: 68 EGRSPPGAAASAAAKPPPLSAKDILLQQQQQLGHG-GPEAAPRAPQ-ALERYPLAAAAER 125
Query: 110 GREEGSPARALDPARGLQQPP 130
GS + PA L QPP
Sbjct: 126 PPRLGSDFGSSRPAASLAQPP 146
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.314 0.131 0.407
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,843,603
Number of Sequences: 37866
Number of extensions: 464619
Number of successful extensions: 3474
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 116
Number of HSP's successfully gapped in prelim test: 354
Number of HSP's that attempted gapping in prelim test: 2921
Number of HSP's gapped (non-prelim): 891
length of query: 146
length of database: 18,247,518
effective HSP length: 92
effective length of query: 54
effective length of database: 14,763,846
effective search space: 797247684
effective search space used: 797247684
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 57 (26.6 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.