Guide to the Human Genome
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Name: LOC100287151 Sequence: fasta or formatted (146aa) NCBI GI: 239745758
Description:

PREDICTED: hypothetical protein XP_002343547

Not currently referenced in the text

Other entries for this name:
alt mRNA {146aa} PREDICTED: hypothetical protein
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            13.0         19           2
 C cysteine            2.7          4           1
 D aspartate           1.4          2           1
 E glutamate           4.1          6           2
 F phenylalanine       2.1          3           1
 G glycine            11.6         17           2
 H histidine           2.1          3           1
 I isoleucine          0.0          0           0
 K lysine              4.1          6           1
 L leucine             7.5         11           1
 M methionine          0.7          1           1
 N asparagine          0.7          1           1
 P proline            13.0         19           2
 Q glutamine           4.8          7           2
 R arginine           11.6         17           2
 S serine             12.3         18           2
 T threonine           2.1          3           1
 V valine              4.8          7           1
 W tryptophan          1.4          2           1
 Y tyrosine            0.0          0           0
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002343547 
LOC100292869          1.000   PREDICTED: hypothetical protein 
LOC100287151          1.000   PREDICTED: hypothetical protein 
INPP5E                0.051   inositol polyphosphate-5-phosphatase E 
LOC100291136          0.047   PREDICTED: hypothetical protein XP_002347630 
LOC100287129          0.047   PREDICTED: hypothetical protein XP_002343480 
LOC100130360          0.043   PREDICTED: hypothetical protein 
RCOR3                 0.043   REST corepressor 3 isoform a 
RCOR3                 0.043   REST corepressor 3 isoform d 
LRRC38                0.040   PREDICTED: leucine rich repeat containing 38 
LRRC38                0.040   PREDICTED: leucine rich repeat containing 38 
HIC1                  0.040   hypermethylated in cancer 1 isoform 2 
HIC1                  0.040   hypermethylated in cancer 1 isoform 1 
BTBD2                 0.040   BTB (POZ) domain containing 2 
LOC100293375          0.036   PREDICTED: hypothetical protein 
PABPC1                0.036   poly(A) binding protein, cytoplasmic 1 
SCARF2                0.036   scavenger receptor class F, member 2 isoform 1 [Homo...
SCARF2                0.036   scavenger receptor class F, member 2 isoform 2 [Homo...
LOC100289782          0.036   PREDICTED: hypothetical protein XP_002347588 
CELSR1                0.036   cadherin EGF LAG seven-pass G-type receptor 1 
LOC100290769          0.032   PREDICTED: hypothetical protein XP_002346861 
MSX1                  0.032   msh homeobox 1 
FNDC1                 0.032   fibronectin type III domain containing 1 
FBRSL1                0.032   fibrosin-like 1 
LOC100130431          0.029   PREDICTED: hypothetical protein 
LOC100130431          0.029   PREDICTED: hypothetical protein 
LOC100290430          0.029   PREDICTED: hypothetical protein XP_002346632 
NOM1                  0.029   nucleolar protein with MIF4G domain 1 
IRF2BP2               0.029   interferon regulatory factor 2 binding protein 2 is...
IRF2BP2               0.029   interferon regulatory factor 2 binding protein 2 is...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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