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Search of human proteins with 239745646
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239745646 PREDICTED: hypothetical protein XP_002344168 [Homo
sapiens]
(125 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239751159 PREDICTED: hypothetical protein XP_002347733 [Homo ... 263 3e-71
gi|239745646 PREDICTED: hypothetical protein XP_002344168 [Homo ... 263 3e-71
gi|239756545 PREDICTED: hypothetical protein XP_002344931 [Homo ... 30 0.36
gi|239745511 PREDICTED: hypothetical protein XP_002343508 [Homo ... 30 0.36
gi|140560917 myomesin 1 isoform b [Homo sapiens] 29 0.81
gi|140560919 myomesin 1 isoform a [Homo sapiens] 29 0.81
gi|239750208 PREDICTED: hypothetical protein [Homo sapiens] 28 1.8
gi|239744514 PREDICTED: hypothetical protein [Homo sapiens] 28 1.8
gi|49087132 sal-like 2 [Homo sapiens] 28 2.3
gi|142976733 surface glycoprotein, Ig superfamily member [Homo s... 28 2.3
gi|7662046 myeloid/lymphoid or mixed-lineage leukemia 4 [Homo sa... 27 3.1
gi|239755215 PREDICTED: similar to hCG2022304 [Homo sapiens] 27 5.2
gi|239751436 PREDICTED: hypothetical protein [Homo sapiens] 27 5.2
gi|239743970 PREDICTED: hypothetical protein XP_002344248 [Homo ... 27 5.2
gi|209364544 calsyntenin 2 [Homo sapiens] 27 5.2
gi|15147240 brother of CDO [Homo sapiens] 27 5.2
gi|239757701 PREDICTED: hypothetical protein XP_002345525 [Homo ... 26 6.8
gi|239756949 PREDICTED: hypothetical protein [Homo sapiens] 26 6.8
gi|239752186 PREDICTED: hypothetical protein [Homo sapiens] 26 6.8
gi|239746709 PREDICTED: hypothetical protein XP_002343816 [Homo ... 26 6.8
gi|34577081 recombining binding protein L [Homo sapiens] 26 8.9
>gi|239751159 PREDICTED: hypothetical protein XP_002347733 [Homo
sapiens]
Length = 125
Score = 263 bits (672), Expect = 3e-71
Identities = 125/125 (100%), Positives = 125/125 (100%)
Query: 1 MTHSTVAIPDTCLVTGLWNIQEPRAPEHGPPDRSTDTAVGATWVPHRRGKKPGGRHVGAK 60
MTHSTVAIPDTCLVTGLWNIQEPRAPEHGPPDRSTDTAVGATWVPHRRGKKPGGRHVGAK
Sbjct: 1 MTHSTVAIPDTCLVTGLWNIQEPRAPEHGPPDRSTDTAVGATWVPHRRGKKPGGRHVGAK 60
Query: 61 FSASLVIKKMQTKTKVSVRVTTEFQLDWTKGCVTVPGSILRKLPKEIHIESVDGERPTNP 120
FSASLVIKKMQTKTKVSVRVTTEFQLDWTKGCVTVPGSILRKLPKEIHIESVDGERPTNP
Sbjct: 61 FSASLVIKKMQTKTKVSVRVTTEFQLDWTKGCVTVPGSILRKLPKEIHIESVDGERPTNP 120
Query: 121 PSGGA 125
PSGGA
Sbjct: 121 PSGGA 125
>gi|239745646 PREDICTED: hypothetical protein XP_002344168 [Homo
sapiens]
Length = 125
Score = 263 bits (672), Expect = 3e-71
Identities = 125/125 (100%), Positives = 125/125 (100%)
Query: 1 MTHSTVAIPDTCLVTGLWNIQEPRAPEHGPPDRSTDTAVGATWVPHRRGKKPGGRHVGAK 60
MTHSTVAIPDTCLVTGLWNIQEPRAPEHGPPDRSTDTAVGATWVPHRRGKKPGGRHVGAK
Sbjct: 1 MTHSTVAIPDTCLVTGLWNIQEPRAPEHGPPDRSTDTAVGATWVPHRRGKKPGGRHVGAK 60
Query: 61 FSASLVIKKMQTKTKVSVRVTTEFQLDWTKGCVTVPGSILRKLPKEIHIESVDGERPTNP 120
FSASLVIKKMQTKTKVSVRVTTEFQLDWTKGCVTVPGSILRKLPKEIHIESVDGERPTNP
Sbjct: 61 FSASLVIKKMQTKTKVSVRVTTEFQLDWTKGCVTVPGSILRKLPKEIHIESVDGERPTNP 120
Query: 121 PSGGA 125
PSGGA
Sbjct: 121 PSGGA 125
>gi|239756545 PREDICTED: hypothetical protein XP_002344931 [Homo
sapiens]
Length = 427
Score = 30.4 bits (67), Expect = 0.36
Identities = 18/58 (31%), Positives = 27/58 (46%), Gaps = 8/58 (13%)
Query: 4 STVAIPDTCLVTGLWNI-------QEPRAPEHGPPDRSTDTAVGATWVPHRRGKKPGG 54
S + +P CL + LW I + P E GPP + +AV +W+P + GG
Sbjct: 178 SFLELPSKCLTSWLWVIAPRPGPAERPFPGEKGPPGAAA-SAVSGSWLPIMLESEAGG 234
>gi|239745511 PREDICTED: hypothetical protein XP_002343508 [Homo
sapiens]
Length = 427
Score = 30.4 bits (67), Expect = 0.36
Identities = 18/58 (31%), Positives = 27/58 (46%), Gaps = 8/58 (13%)
Query: 4 STVAIPDTCLVTGLWNI-------QEPRAPEHGPPDRSTDTAVGATWVPHRRGKKPGG 54
S + +P CL + LW I + P E GPP + +AV +W+P + GG
Sbjct: 178 SFLELPSKCLTSWLWVIAPRPGPAERPFPGEKGPPGAAA-SAVSGSWLPIMLESEAGG 234
>gi|140560917 myomesin 1 isoform b [Homo sapiens]
Length = 1589
Score = 29.3 bits (64), Expect = 0.81
Identities = 14/42 (33%), Positives = 23/42 (54%)
Query: 23 PRAPEHGPPDRSTDTAVGATWVPHRRGKKPGGRHVGAKFSAS 64
P+AP P R+TDT+V +W + K+ G ++ A + S
Sbjct: 739 PKAPGKIIPSRNTDTSVVVSWEESKDAKELVGYYIEASVAGS 780
>gi|140560919 myomesin 1 isoform a [Homo sapiens]
Length = 1685
Score = 29.3 bits (64), Expect = 0.81
Identities = 14/42 (33%), Positives = 23/42 (54%)
Query: 23 PRAPEHGPPDRSTDTAVGATWVPHRRGKKPGGRHVGAKFSAS 64
P+AP P R+TDT+V +W + K+ G ++ A + S
Sbjct: 739 PKAPGKIIPSRNTDTSVVVSWEESKDAKELVGYYIEASVAGS 780
>gi|239750208 PREDICTED: hypothetical protein [Homo sapiens]
Length = 92
Score = 28.1 bits (61), Expect = 1.8
Identities = 11/24 (45%), Positives = 13/24 (54%)
Query: 31 PDRSTDTAVGATWVPHRRGKKPGG 54
P R GA WVP RR ++P G
Sbjct: 13 PPRPGQRQAGAPWVPERRKRRPDG 36
>gi|239744514 PREDICTED: hypothetical protein [Homo sapiens]
Length = 92
Score = 28.1 bits (61), Expect = 1.8
Identities = 11/24 (45%), Positives = 13/24 (54%)
Query: 31 PDRSTDTAVGATWVPHRRGKKPGG 54
P R GA WVP RR ++P G
Sbjct: 13 PPRPGQRQAGAPWVPERRKRRPDG 36
>gi|49087132 sal-like 2 [Homo sapiens]
Length = 1007
Score = 27.7 bits (60), Expect = 2.3
Identities = 13/34 (38%), Positives = 17/34 (50%), Gaps = 1/34 (2%)
Query: 27 EHG-PPDRSTDTAVGATWVPHRRGKKPGGRHVGA 59
EH PPD + TW P RRG++ G + A
Sbjct: 95 EHSNPPDSGSSVPTDPTWGPERRGEESPGHFLVA 128
>gi|142976733 surface glycoprotein, Ig superfamily member [Homo
sapiens]
Length = 1264
Score = 27.7 bits (60), Expect = 2.3
Identities = 10/30 (33%), Positives = 16/30 (53%)
Query: 23 PRAPEHGPPDRSTDTAVGATWVPHRRGKKP 52
P AP+ +++T+V TW+P G P
Sbjct: 721 PEAPDRPTISTASETSVYVTWIPRANGGSP 750
>gi|7662046 myeloid/lymphoid or mixed-lineage leukemia 4 [Homo
sapiens]
Length = 2715
Score = 27.3 bits (59), Expect = 3.1
Identities = 23/87 (26%), Positives = 32/87 (36%), Gaps = 9/87 (10%)
Query: 4 STVAIPDTCLVTGLWNIQEPRAPEHGPPDRSTDTAVGATWVPHRRGKKPGG-RHVGAKFS 62
+ V P V W QEP PE G P A +GK P H+
Sbjct: 1529 NAVLPPSLDHVYAQWRQQEPETPESGQPPGDPSAAF--------QGKDPAAFSHLEDPRQ 1580
Query: 63 ASLVIKKMQTKTKVSVRVTTEFQLDWT 89
+L +K +K + R+ Q +WT
Sbjct: 1581 CALCLKYGDADSKEAGRLLYIGQNEWT 1607
>gi|239755215 PREDICTED: similar to hCG2022304 [Homo sapiens]
Length = 117
Score = 26.6 bits (57), Expect = 5.2
Identities = 14/44 (31%), Positives = 16/44 (36%)
Query: 21 QEPRAPEHGPPDRSTDTAVGATWVPHRRGKKPGGRHVGAKFSAS 64
+ P P G R +G W P G PG G K AS
Sbjct: 43 ESPSVPRLGSGTRGAGMELGCPWAPSWAGAHPGRVVTGKKPRAS 86
>gi|239751436 PREDICTED: hypothetical protein [Homo sapiens]
Length = 121
Score = 26.6 bits (57), Expect = 5.2
Identities = 15/55 (27%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
Query: 2 THSTVAIPDTCLVTGLWNIQEPRAPEHGPPDRSTDTAVGATWVPHRRGKKP-GGR 55
TH++V++ ++ G + PR+P +R + + T P +R + P GGR
Sbjct: 56 THTSVSLTGGPVLAGKLLAKRPRSPPSPNGERGSAESRSPTAAPQQRPRSPVGGR 110
>gi|239743970 PREDICTED: hypothetical protein XP_002344248 [Homo
sapiens]
Length = 117
Score = 26.6 bits (57), Expect = 5.2
Identities = 14/44 (31%), Positives = 16/44 (36%)
Query: 21 QEPRAPEHGPPDRSTDTAVGATWVPHRRGKKPGGRHVGAKFSAS 64
+ P P G R +G W P G PG G K AS
Sbjct: 43 ESPSVPRLGSGTRGAGMELGCPWAPSWAGAHPGRVVTGKKPRAS 86
>gi|209364544 calsyntenin 2 [Homo sapiens]
Length = 955
Score = 26.6 bits (57), Expect = 5.2
Identities = 13/28 (46%), Positives = 15/28 (53%)
Query: 87 DWTKGCVTVPGSILRKLPKEIHIESVDG 114
DWTK PGS L IH+E+ DG
Sbjct: 263 DWTKRIEYQPGSGSMPLFPSIHLETCDG 290
>gi|15147240 brother of CDO [Homo sapiens]
Length = 1114
Score = 26.6 bits (57), Expect = 5.2
Identities = 10/33 (30%), Positives = 17/33 (51%)
Query: 20 IQEPRAPEHGPPDRSTDTAVGATWVPHRRGKKP 52
+ P AP+ +++T+V TW+P G P
Sbjct: 603 LSPPEAPDRPTISTASETSVYVTWIPRGNGGFP 635
>gi|239757701 PREDICTED: hypothetical protein XP_002345525 [Homo
sapiens]
Length = 180
Score = 26.2 bits (56), Expect = 6.8
Identities = 21/60 (35%), Positives = 26/60 (43%), Gaps = 8/60 (13%)
Query: 24 RAPEHGPP-DRSTDTAV---GATWVPHRRGKKPGGRHVGAKFSASLVIKKMQTKTKVSVR 79
R P+ PP R DT + + GKK GG+ VG FS K + K SVR
Sbjct: 79 RGPQRSPPISRMLDTNLLSGSSLQQMAASGKKAGGQSVGTNFSQ----KSFTLRPKSSVR 134
>gi|239756949 PREDICTED: hypothetical protein [Homo sapiens]
Length = 121
Score = 26.2 bits (56), Expect = 6.8
Identities = 15/55 (27%), Positives = 27/55 (49%), Gaps = 1/55 (1%)
Query: 2 THSTVAIPDTCLVTGLWNIQEPRAPEHGPPDRSTDTAVGATWVPHRRGKKP-GGR 55
TH++V + ++ G + PR+P +R + + T P +R + P GGR
Sbjct: 56 THTSVRLTGGPVLAGKLLAKRPRSPPSPNGERGSAASRSPTAAPQQRPRSPVGGR 110
>gi|239752186 PREDICTED: hypothetical protein [Homo sapiens]
Length = 180
Score = 26.2 bits (56), Expect = 6.8
Identities = 21/60 (35%), Positives = 26/60 (43%), Gaps = 8/60 (13%)
Query: 24 RAPEHGPP-DRSTDTAV---GATWVPHRRGKKPGGRHVGAKFSASLVIKKMQTKTKVSVR 79
R P+ PP R DT + + GKK GG+ VG FS K + K SVR
Sbjct: 79 RGPQRSPPISRMLDTNLLSGSSLQQMAASGKKAGGQSVGTNFSQ----KSFTLRPKSSVR 134
>gi|239746709 PREDICTED: hypothetical protein XP_002343816 [Homo
sapiens]
Length = 180
Score = 26.2 bits (56), Expect = 6.8
Identities = 21/60 (35%), Positives = 26/60 (43%), Gaps = 8/60 (13%)
Query: 24 RAPEHGPP-DRSTDTAV---GATWVPHRRGKKPGGRHVGAKFSASLVIKKMQTKTKVSVR 79
R P+ PP R DT + + GKK GG+ VG FS K + K SVR
Sbjct: 79 RGPQRSPPISRMLDTNLLSGSSLQQMAASGKKAGGQSVGTNFSQ----KSFTLRPKSSVR 134
>gi|34577081 recombining binding protein L [Homo sapiens]
Length = 517
Score = 25.8 bits (55), Expect = 8.9
Identities = 18/57 (31%), Positives = 27/57 (47%), Gaps = 10/57 (17%)
Query: 78 VRVTTEFQLDWTKGCVTVPGSILRKLPKEIHIESVDG----------ERPTNPPSGG 124
VR + QL T +T+P I+RK+ K+ + VD + P +PP GG
Sbjct: 269 VRYGSLVQLVCTVTGITLPPMIIRKVAKQCALLDVDEPISQLHKCAFQFPGSPPGGG 325
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.315 0.132 0.415
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,127,638
Number of Sequences: 37866
Number of extensions: 256309
Number of successful extensions: 442
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 428
Number of HSP's gapped (non-prelim): 22
length of query: 125
length of database: 18,247,518
effective HSP length: 90
effective length of query: 35
effective length of database: 14,839,578
effective search space: 519385230
effective search space used: 519385230
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.