Guide to the Human Genome
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Name: RBPJL Sequence: fasta or formatted (517aa) NCBI GI: 34577081
Description:

recombining binding protein L

Referenced in:

Notch Pathway
Pancreas and Insulin

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.4         38           2
 C cysteine            3.1         16           1
 D aspartate           4.4         23           1
 E glutamate           5.2         27           1
 F phenylalanine       4.6         24           2
 G glycine             7.5         39           4
 H histidine           2.7         14           1
 I isoleucine          3.3         17           2
 K lysine              3.9         20           2
 L leucine             9.7         50           2
 M methionine          1.2          6           1
 N asparagine          1.7          9           1
 P proline             7.4         38           3
 Q glutamine           5.2         27           3
 R arginine            6.2         32           2
 S serine              9.1         47           2
 T threonine           7.0         36           2
 V valine              6.8         35           2
 W tryptophan          1.4          7           1
 Y tyrosine            2.3         12           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   recombining binding protein L 
RBPJ                  0.448   recombining binding protein suppressor of hairless i...
RBPJ                  0.448   recombining binding protein suppressor of hairless i...
RBPJ                  0.448   recombining binding protein suppressor of hairless i...
RBPJ                  0.448   recombining binding protein suppressor of hairless i...
MXRA5                 0.012   adlican 
MDGA1                 0.008   MAM domain containing glycosylphosphatidylinositol a...
TET2                  0.007   tet oncogene family member 2 isoform b 
TET2                  0.007   tet oncogene family member 2 isoform a 
CDKN2AIP              0.007   CDKN2A interacting protein 
ZNF462                0.005   zinc finger protein 462 
ZFHX2                 0.005   PREDICTED: zinc finger homeobox 2 
ZFHX2                 0.005   PREDICTED: zinc finger homeobox 2 
ZFHX2                 0.005   PREDICTED: zinc finger homeobox 2 
HSPG2                 0.004   heparan sulfate proteoglycan 2 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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