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Search of human proteins with 239745395
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239745395 PREDICTED: hypothetical protein [Homo sapiens]
(135 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239756468 PREDICTED: hypothetical protein isoform 3 [Homo sap... 278 1e-75
gi|239750994 PREDICTED: hypothetical protein [Homo sapiens] 278 1e-75
gi|239745395 PREDICTED: hypothetical protein [Homo sapiens] 278 1e-75
gi|239756470 PREDICTED: hypothetical protein isoform 2 [Homo sap... 160 2e-40
gi|239750996 PREDICTED: hypothetical protein [Homo sapiens] 160 2e-40
gi|239745397 PREDICTED: hypothetical protein [Homo sapiens] 160 2e-40
gi|169209671 PREDICTED: hypothetical protein isoform 1 [Homo sap... 146 4e-36
gi|89040598 PREDICTED: hypothetical protein isoform 4 [Homo sapi... 146 4e-36
gi|89039658 PREDICTED: hypothetical protein isoform 2 [Homo sapi... 146 4e-36
gi|157671953 solute carrier family 4, anion exchanger, member 3 ... 37 0.005
gi|244790138 hypothetical protein LOC643008 [Homo sapiens] 33 0.054
gi|242332502 hypothetical protein LOC9674 [Homo sapiens] 33 0.070
gi|242332500 hypothetical protein LOC9674 [Homo sapiens] 33 0.070
gi|242332498 hypothetical protein LOC9674 [Homo sapiens] 33 0.070
gi|242332496 hypothetical protein LOC9674 [Homo sapiens] 33 0.070
gi|157671951 solute carrier family 4, anion exchanger, member 3 ... 31 0.27
gi|28557777 immunoglobulin-like domain containing receptor 1 [Ho... 30 0.45
gi|110825988 TAR RNA binding protein 1 [Homo sapiens] 30 0.59
gi|195220720 RUN and FYVE domain containing 3 isoform 3 [Homo sa... 30 0.78
gi|33589846 membrane-associated ring finger (C3HC4) 6 [Homo sapi... 29 1.0
gi|150378549 tangerin [Homo sapiens] 29 1.3
gi|208879423 leukocyte receptor tyrosine kinase isoform 3 precur... 28 1.7
gi|42544153 leukocyte receptor tyrosine kinase isoform 1 precurs... 28 1.7
gi|46249416 leukocyte receptor tyrosine kinase isoform 2 precurs... 28 1.7
gi|33359221 dyslexia susceptibility 2-like [Homo sapiens] 28 2.3
gi|114796626 solute carrier family 16, member 8 [Homo sapiens] 28 2.3
gi|119395718 cytoplasmic polyadenylation element binding protein... 28 2.9
gi|149158690 HLA-B associated transcript-2 [Homo sapiens] 28 2.9
gi|51242137 transmembrane protein 200B [Homo sapiens] 28 2.9
gi|15011862 plexin domain containing 1 precursor [Homo sapiens] 27 3.8
>gi|239756468 PREDICTED: hypothetical protein isoform 3 [Homo
sapiens]
Length = 135
Score = 278 bits (710), Expect = 1e-75
Identities = 135/135 (100%), Positives = 135/135 (100%)
Query: 1 MAVSTEELEATVQEVLGRLKSHQFFQSTWDTVAFIVFLTFMGTVLLLLLLVVAHCCCCSS 60
MAVSTEELEATVQEVLGRLKSHQFFQSTWDTVAFIVFLTFMGTVLLLLLLVVAHCCCCSS
Sbjct: 1 MAVSTEELEATVQEVLGRLKSHQFFQSTWDTVAFIVFLTFMGTVLLLLLLVVAHCCCCSS 60
Query: 61 PGPRRESPRKVSPWKVSPAGLWDLHGTVLGVEAEGEGSGGKGAHPPREQRANLLGPAVLL 120
PGPRRESPRKVSPWKVSPAGLWDLHGTVLGVEAEGEGSGGKGAHPPREQRANLLGPAVLL
Sbjct: 61 PGPRRESPRKVSPWKVSPAGLWDLHGTVLGVEAEGEGSGGKGAHPPREQRANLLGPAVLL 120
Query: 121 VQERPKGVDNLALEP 135
VQERPKGVDNLALEP
Sbjct: 121 VQERPKGVDNLALEP 135
>gi|239750994 PREDICTED: hypothetical protein [Homo sapiens]
Length = 135
Score = 278 bits (710), Expect = 1e-75
Identities = 135/135 (100%), Positives = 135/135 (100%)
Query: 1 MAVSTEELEATVQEVLGRLKSHQFFQSTWDTVAFIVFLTFMGTVLLLLLLVVAHCCCCSS 60
MAVSTEELEATVQEVLGRLKSHQFFQSTWDTVAFIVFLTFMGTVLLLLLLVVAHCCCCSS
Sbjct: 1 MAVSTEELEATVQEVLGRLKSHQFFQSTWDTVAFIVFLTFMGTVLLLLLLVVAHCCCCSS 60
Query: 61 PGPRRESPRKVSPWKVSPAGLWDLHGTVLGVEAEGEGSGGKGAHPPREQRANLLGPAVLL 120
PGPRRESPRKVSPWKVSPAGLWDLHGTVLGVEAEGEGSGGKGAHPPREQRANLLGPAVLL
Sbjct: 61 PGPRRESPRKVSPWKVSPAGLWDLHGTVLGVEAEGEGSGGKGAHPPREQRANLLGPAVLL 120
Query: 121 VQERPKGVDNLALEP 135
VQERPKGVDNLALEP
Sbjct: 121 VQERPKGVDNLALEP 135
>gi|239745395 PREDICTED: hypothetical protein [Homo sapiens]
Length = 135
Score = 278 bits (710), Expect = 1e-75
Identities = 135/135 (100%), Positives = 135/135 (100%)
Query: 1 MAVSTEELEATVQEVLGRLKSHQFFQSTWDTVAFIVFLTFMGTVLLLLLLVVAHCCCCSS 60
MAVSTEELEATVQEVLGRLKSHQFFQSTWDTVAFIVFLTFMGTVLLLLLLVVAHCCCCSS
Sbjct: 1 MAVSTEELEATVQEVLGRLKSHQFFQSTWDTVAFIVFLTFMGTVLLLLLLVVAHCCCCSS 60
Query: 61 PGPRRESPRKVSPWKVSPAGLWDLHGTVLGVEAEGEGSGGKGAHPPREQRANLLGPAVLL 120
PGPRRESPRKVSPWKVSPAGLWDLHGTVLGVEAEGEGSGGKGAHPPREQRANLLGPAVLL
Sbjct: 61 PGPRRESPRKVSPWKVSPAGLWDLHGTVLGVEAEGEGSGGKGAHPPREQRANLLGPAVLL 120
Query: 121 VQERPKGVDNLALEP 135
VQERPKGVDNLALEP
Sbjct: 121 VQERPKGVDNLALEP 135
>gi|239756470 PREDICTED: hypothetical protein isoform 2 [Homo
sapiens]
Length = 88
Score = 160 bits (406), Expect = 2e-40
Identities = 78/84 (92%), Positives = 80/84 (95%)
Query: 1 MAVSTEELEATVQEVLGRLKSHQFFQSTWDTVAFIVFLTFMGTVLLLLLLVVAHCCCCSS 60
MAVSTEELEATVQEVLGRLKSHQFFQSTWDTVAFIVFLTFMGTVLLLLLLVVAHCCCCSS
Sbjct: 1 MAVSTEELEATVQEVLGRLKSHQFFQSTWDTVAFIVFLTFMGTVLLLLLLVVAHCCCCSS 60
Query: 61 PGPRRESPRKVSPWKVSPAGLWDL 84
PGPRRESPRKVSPWK P G+ +L
Sbjct: 61 PGPRRESPRKVSPWKERPKGVDNL 84
>gi|239750996 PREDICTED: hypothetical protein [Homo sapiens]
Length = 88
Score = 160 bits (406), Expect = 2e-40
Identities = 78/84 (92%), Positives = 80/84 (95%)
Query: 1 MAVSTEELEATVQEVLGRLKSHQFFQSTWDTVAFIVFLTFMGTVLLLLLLVVAHCCCCSS 60
MAVSTEELEATVQEVLGRLKSHQFFQSTWDTVAFIVFLTFMGTVLLLLLLVVAHCCCCSS
Sbjct: 1 MAVSTEELEATVQEVLGRLKSHQFFQSTWDTVAFIVFLTFMGTVLLLLLLVVAHCCCCSS 60
Query: 61 PGPRRESPRKVSPWKVSPAGLWDL 84
PGPRRESPRKVSPWK P G+ +L
Sbjct: 61 PGPRRESPRKVSPWKERPKGVDNL 84
>gi|239745397 PREDICTED: hypothetical protein [Homo sapiens]
Length = 88
Score = 160 bits (406), Expect = 2e-40
Identities = 78/84 (92%), Positives = 80/84 (95%)
Query: 1 MAVSTEELEATVQEVLGRLKSHQFFQSTWDTVAFIVFLTFMGTVLLLLLLVVAHCCCCSS 60
MAVSTEELEATVQEVLGRLKSHQFFQSTWDTVAFIVFLTFMGTVLLLLLLVVAHCCCCSS
Sbjct: 1 MAVSTEELEATVQEVLGRLKSHQFFQSTWDTVAFIVFLTFMGTVLLLLLLVVAHCCCCSS 60
Query: 61 PGPRRESPRKVSPWKVSPAGLWDL 84
PGPRRESPRKVSPWK P G+ +L
Sbjct: 61 PGPRRESPRKVSPWKERPKGVDNL 84
>gi|169209671 PREDICTED: hypothetical protein isoform 1 [Homo
sapiens]
Length = 83
Score = 146 bits (369), Expect = 4e-36
Identities = 83/135 (61%), Positives = 83/135 (61%), Gaps = 52/135 (38%)
Query: 1 MAVSTEELEATVQEVLGRLKSHQFFQSTWDTVAFIVFLTFMGTVLLLLLLVVAHCCCCSS 60
MAVSTEELEATVQEVLGRLKSHQFFQSTWDTVAFIVFLTFMGTVLLLLLLVVAHCCCCSS
Sbjct: 1 MAVSTEELEATVQEVLGRLKSHQFFQSTWDTVAFIVFLTFMGTVLLLLLLVVAHCCCCSS 60
Query: 61 PGPRRESPRKVSPWKVSPAGLWDLHGTVLGVEAEGEGSGGKGAHPPREQRANLLGPAVLL 120
PGPRRESPRK
Sbjct: 61 PGPRRESPRK-------------------------------------------------- 70
Query: 121 VQERPKGVDNLALEP 135
ERPKGVDNLALEP
Sbjct: 71 --ERPKGVDNLALEP 83
>gi|89040598 PREDICTED: hypothetical protein isoform 4 [Homo
sapiens]
Length = 83
Score = 146 bits (369), Expect = 4e-36
Identities = 83/135 (61%), Positives = 83/135 (61%), Gaps = 52/135 (38%)
Query: 1 MAVSTEELEATVQEVLGRLKSHQFFQSTWDTVAFIVFLTFMGTVLLLLLLVVAHCCCCSS 60
MAVSTEELEATVQEVLGRLKSHQFFQSTWDTVAFIVFLTFMGTVLLLLLLVVAHCCCCSS
Sbjct: 1 MAVSTEELEATVQEVLGRLKSHQFFQSTWDTVAFIVFLTFMGTVLLLLLLVVAHCCCCSS 60
Query: 61 PGPRRESPRKVSPWKVSPAGLWDLHGTVLGVEAEGEGSGGKGAHPPREQRANLLGPAVLL 120
PGPRRESPRK
Sbjct: 61 PGPRRESPRK-------------------------------------------------- 70
Query: 121 VQERPKGVDNLALEP 135
ERPKGVDNLALEP
Sbjct: 71 --ERPKGVDNLALEP 83
>gi|89039658 PREDICTED: hypothetical protein isoform 2 [Homo
sapiens]
Length = 83
Score = 146 bits (369), Expect = 4e-36
Identities = 83/135 (61%), Positives = 83/135 (61%), Gaps = 52/135 (38%)
Query: 1 MAVSTEELEATVQEVLGRLKSHQFFQSTWDTVAFIVFLTFMGTVLLLLLLVVAHCCCCSS 60
MAVSTEELEATVQEVLGRLKSHQFFQSTWDTVAFIVFLTFMGTVLLLLLLVVAHCCCCSS
Sbjct: 1 MAVSTEELEATVQEVLGRLKSHQFFQSTWDTVAFIVFLTFMGTVLLLLLLVVAHCCCCSS 60
Query: 61 PGPRRESPRKVSPWKVSPAGLWDLHGTVLGVEAEGEGSGGKGAHPPREQRANLLGPAVLL 120
PGPRRESPRK
Sbjct: 61 PGPRRESPRK-------------------------------------------------- 70
Query: 121 VQERPKGVDNLALEP 135
ERPKGVDNLALEP
Sbjct: 71 --ERPKGVDNLALEP 83
>gi|157671953 solute carrier family 4, anion exchanger, member 3
isoform 2 [Homo sapiens]
Length = 1259
Score = 37.0 bits (84), Expect = 0.005
Identities = 29/82 (35%), Positives = 35/82 (42%), Gaps = 6/82 (7%)
Query: 42 GTVLLLLLLVVAHCCCCSSPGPRRESPR----KVSPWKVSPAGLWDLHGTVLGVEAEGEG 97
GT L L CC SSP PR + R K PW SP+ +DL + A G
Sbjct: 214 GTTDLALSSPRLLCCLPSSPSPRARASRLAGEKSRPW--SPSASYDLRERLCPGSALGNP 271
Query: 98 SGGKGAHPPREQRANLLGPAVL 119
G + P E A +LG A L
Sbjct: 272 GGPEQQVPTDEAEAQMLGSADL 293
>gi|244790138 hypothetical protein LOC643008 [Homo sapiens]
Length = 77
Score = 33.5 bits (75), Expect = 0.054
Identities = 18/47 (38%), Positives = 24/47 (51%), Gaps = 3/47 (6%)
Query: 30 DTVAFIVFLTFMGTVLLLLLLVVAHC---CCCSSPGPRRESPRKVSP 73
+ VAF V + F TVLLLLL+ + C CCC R+ + P
Sbjct: 31 EIVAFSVIILFTATVLLLLLIACSCCCTHCCCPERRGRKVQVQPTPP 77
>gi|242332502 hypothetical protein LOC9674 [Homo sapiens]
Length = 99
Score = 33.1 bits (74), Expect = 0.070
Identities = 19/58 (32%), Positives = 27/58 (46%), Gaps = 11/58 (18%)
Query: 24 FFQSTWDTVAF---------IVFLTFMGTVLLLLLLVVAHCC--CCSSPGPRRESPRK 70
FF S WDT+ I +G LL+++ ++ CC C S PG R + P K
Sbjct: 7 FFSSIWDTILTKHQEGIYNTICLGVLLGLPLLVIITLLFICCHCCWSPPGKRGQQPEK 64
>gi|242332500 hypothetical protein LOC9674 [Homo sapiens]
Length = 99
Score = 33.1 bits (74), Expect = 0.070
Identities = 19/58 (32%), Positives = 27/58 (46%), Gaps = 11/58 (18%)
Query: 24 FFQSTWDTVAF---------IVFLTFMGTVLLLLLLVVAHCC--CCSSPGPRRESPRK 70
FF S WDT+ I +G LL+++ ++ CC C S PG R + P K
Sbjct: 7 FFSSIWDTILTKHQEGIYNTICLGVLLGLPLLVIITLLFICCHCCWSPPGKRGQQPEK 64
>gi|242332498 hypothetical protein LOC9674 [Homo sapiens]
Length = 99
Score = 33.1 bits (74), Expect = 0.070
Identities = 19/58 (32%), Positives = 27/58 (46%), Gaps = 11/58 (18%)
Query: 24 FFQSTWDTVAF---------IVFLTFMGTVLLLLLLVVAHCC--CCSSPGPRRESPRK 70
FF S WDT+ I +G LL+++ ++ CC C S PG R + P K
Sbjct: 7 FFSSIWDTILTKHQEGIYNTICLGVLLGLPLLVIITLLFICCHCCWSPPGKRGQQPEK 64
>gi|242332496 hypothetical protein LOC9674 [Homo sapiens]
Length = 99
Score = 33.1 bits (74), Expect = 0.070
Identities = 19/58 (32%), Positives = 27/58 (46%), Gaps = 11/58 (18%)
Query: 24 FFQSTWDTVAF---------IVFLTFMGTVLLLLLLVVAHCC--CCSSPGPRRESPRK 70
FF S WDT+ I +G LL+++ ++ CC C S PG R + P K
Sbjct: 7 FFSSIWDTILTKHQEGIYNTICLGVLLGLPLLVIITLLFICCHCCWSPPGKRGQQPEK 64
>gi|157671951 solute carrier family 4, anion exchanger, member 3
isoform 1 [Homo sapiens]
Length = 1232
Score = 31.2 bits (69), Expect = 0.27
Identities = 23/65 (35%), Positives = 29/65 (44%), Gaps = 6/65 (9%)
Query: 59 SSPGPRRESPR----KVSPWKVSPAGLWDLHGTVLGVEAEGEGSGGKGAHPPREQRANLL 114
SSP PR + R K PW SP+ +DL + A G G + P E A +L
Sbjct: 204 SSPSPRARASRLAGEKSRPW--SPSASYDLRERLCPGSALGNPGGPEQQVPTDEAEAQML 261
Query: 115 GPAVL 119
G A L
Sbjct: 262 GSADL 266
>gi|28557777 immunoglobulin-like domain containing receptor 1 [Homo
sapiens]
Length = 502
Score = 30.4 bits (67), Expect = 0.45
Identities = 15/30 (50%), Positives = 19/30 (63%), Gaps = 4/30 (13%)
Query: 29 WDTVAFIVFLTFMGTVLLLLLLVVAHCCCC 58
W TV FI+ +G +LLLLL+ V C CC
Sbjct: 168 WLTVIFII----LGALLLLLLIGVCWCQCC 193
>gi|110825988 TAR RNA binding protein 1 [Homo sapiens]
Length = 1621
Score = 30.0 bits (66), Expect = 0.59
Identities = 18/46 (39%), Positives = 25/46 (54%), Gaps = 2/46 (4%)
Query: 92 EAEGEGSGGKGAHP--PREQRANLLGPAVLLVQERPKGVDNLALEP 135
+ E GSGG GA P RE A L P + ++ RP G + +L+P
Sbjct: 45 DEEARGSGGAGALPEAAREVAAGYLVPLLRSLRGRPAGGPDPSLQP 90
>gi|195220720 RUN and FYVE domain containing 3 isoform 3 [Homo
sapiens]
Length = 506
Score = 29.6 bits (65), Expect = 0.78
Identities = 18/62 (29%), Positives = 28/62 (45%), Gaps = 4/62 (6%)
Query: 65 RESPRKVSPWKVSPAGLWDLHGTVLGVEAEGEGSGGKGAHPPR----EQRANLLGPAVLL 120
R P++ W+ P+ L +L + G GS G G H P +R NL+ A L
Sbjct: 80 RPPPQQQRSWRTPPSPGSPLPFLLLSYPSGGGGSSGSGKHHPNYLMANERMNLMNMAKLS 139
Query: 121 VQ 122
++
Sbjct: 140 IK 141
>gi|33589846 membrane-associated ring finger (C3HC4) 6 [Homo
sapiens]
Length = 910
Score = 29.3 bits (64), Expect = 1.0
Identities = 23/74 (31%), Positives = 30/74 (40%)
Query: 45 LLLLLLVVAHCCCCSSPGPRRESPRKVSPWKVSPAGLWDLHGTVLGVEAEGEGSGGKGAH 104
L LLLL V R+ V W V+ L DLH +LG + E E S + +
Sbjct: 527 LELLLLQVVLPALLEQGHTRQWLKGLVRAWTVTAGYLLDLHSYLLGDQEENENSANQQVN 586
Query: 105 PPREQRANLLGPAV 118
+ R N P V
Sbjct: 587 NNQHARNNNAIPVV 600
>gi|150378549 tangerin [Homo sapiens]
Length = 1523
Score = 28.9 bits (63), Expect = 1.3
Identities = 22/67 (32%), Positives = 29/67 (43%), Gaps = 4/67 (5%)
Query: 64 RRESPRKVSPWKVSPAG----LWDLHGTVLGVEAEGEGSGGKGAHPPREQRANLLGPAVL 119
R E+P +S PAG L DL G E EG+ +G P E GP+V
Sbjct: 471 RDEAPSGLSLPPAEPAGHSGQLGDLEGARAAAGQEREGAEVRGGAPGIEGTGLEQGPSVG 530
Query: 120 LVQERPK 126
+ RP+
Sbjct: 531 AISTRPQ 537
>gi|208879423 leukocyte receptor tyrosine kinase isoform 3 precursor
[Homo sapiens]
Length = 734
Score = 28.5 bits (62), Expect = 1.7
Identities = 11/26 (42%), Positives = 13/26 (50%)
Query: 57 CCSSPGPRRESPRKVSPWKVSPAGLW 82
C P P+ SP K+ W SP G W
Sbjct: 684 CLRPPQPQELSPEKLKSWGGSPLGPW 709
>gi|42544153 leukocyte receptor tyrosine kinase isoform 1 precursor
[Homo sapiens]
Length = 864
Score = 28.5 bits (62), Expect = 1.7
Identities = 11/26 (42%), Positives = 13/26 (50%)
Query: 57 CCSSPGPRRESPRKVSPWKVSPAGLW 82
C P P+ SP K+ W SP G W
Sbjct: 814 CLRPPQPQELSPEKLKSWGGSPLGPW 839
>gi|46249416 leukocyte receptor tyrosine kinase isoform 2 precursor
[Homo sapiens]
Length = 803
Score = 28.5 bits (62), Expect = 1.7
Identities = 11/26 (42%), Positives = 13/26 (50%)
Query: 57 CCSSPGPRRESPRKVSPWKVSPAGLW 82
C P P+ SP K+ W SP G W
Sbjct: 753 CLRPPQPQELSPEKLKSWGGSPLGPW 778
>gi|33359221 dyslexia susceptibility 2-like [Homo sapiens]
Length = 1049
Score = 28.1 bits (61), Expect = 2.3
Identities = 14/42 (33%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
Query: 31 TVAFIVFLTFMGTVLLLLLLVVAHCCCCSSPG-PRRESPRKV 71
+V +++ TF+ V L +L CCC G P+R+S K+
Sbjct: 929 SVLYVIIATFVIVVALGILSWTVICCCKRQKGKPKRKSKYKI 970
>gi|114796626 solute carrier family 16, member 8 [Homo sapiens]
Length = 504
Score = 28.1 bits (61), Expect = 2.3
Identities = 30/81 (37%), Positives = 36/81 (44%), Gaps = 19/81 (23%)
Query: 46 LLLLLVVAHCCCCSS-------PGPRRESPRKVSPWKVSPAGLWDLHGTVLG-VEAEGEG 97
LLL ++ HCC C + PGPR PR+ S AG D G G EA+G G
Sbjct: 178 LLLGGLLLHCCACGAVMRPPPGPGPR---PRRDS------AG--DRAGDAPGEAEADGAG 226
Query: 98 SGGKGAHPPREQRANLLGPAV 118
+ A P R LL AV
Sbjct: 227 LQLREASPRVRPRRRLLDLAV 247
>gi|119395718 cytoplasmic polyadenylation element binding protein 1
isoform 2 [Homo sapiens]
Length = 491
Score = 27.7 bits (60), Expect = 2.9
Identities = 19/59 (32%), Positives = 26/59 (44%), Gaps = 2/59 (3%)
Query: 73 PWKVSPAGLWDLHGTVLGVEAEGEGSGGKGAHPPREQRANLLGPAVLLVQERPKGVDNL 131
PW ++ AGL + + E G GK HP + N+ V LV E K V +L
Sbjct: 244 PWDITEAGLVNTFRVFGSLSVEWPGKDGK--HPRCPPKGNMPKGYVYLVFELEKSVRSL 300
>gi|149158690 HLA-B associated transcript-2 [Homo sapiens]
Length = 2157
Score = 27.7 bits (60), Expect = 2.9
Identities = 17/51 (33%), Positives = 25/51 (49%), Gaps = 10/51 (19%)
Query: 60 SPGPRRESPRKVSPWKVSP-AGLWDLHGTVLGVEAEGEGSGGKGAHPPREQ 109
+P P++E P++ + P AG A G GSGG+G PPR +
Sbjct: 878 TPPPKKEPPKEETAQLTGPEAGR---------KPARGVGSGGQGPPPPRRE 919
>gi|51242137 transmembrane protein 200B [Homo sapiens]
Length = 307
Score = 27.7 bits (60), Expect = 2.9
Identities = 14/28 (50%), Positives = 16/28 (57%), Gaps = 1/28 (3%)
Query: 92 EAEGEGSGGKGAHPPREQRANLLGPAVL 119
E EG GG AH P E R LLGP ++
Sbjct: 96 ELRREGRGGGRAHGPHE-RLRLLGPVIM 122
>gi|15011862 plexin domain containing 1 precursor [Homo sapiens]
Length = 500
Score = 27.3 bits (59), Expect = 3.8
Identities = 20/66 (30%), Positives = 26/66 (39%), Gaps = 5/66 (7%)
Query: 65 RESPRKVSPWKVS-----PAGLWDLHGTVLGVEAEGEGSGGKGAHPPREQRANLLGPAVL 119
RE+ R +SP + P W GTV G S G + P R Q + LG L
Sbjct: 13 REAARALSPQPGAGHDEGPGSGWAAKGTVRGWNRRARESPGHVSEPDRTQLSQDLGGGTL 72
Query: 120 LVQERP 125
+ P
Sbjct: 73 AMDTLP 78
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.320 0.137 0.427
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,010,901
Number of Sequences: 37866
Number of extensions: 307358
Number of successful extensions: 1320
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 30
Number of HSP's successfully gapped in prelim test: 23
Number of HSP's that attempted gapping in prelim test: 1253
Number of HSP's gapped (non-prelim): 70
length of query: 135
length of database: 18,247,518
effective HSP length: 91
effective length of query: 44
effective length of database: 14,801,712
effective search space: 651275328
effective search space used: 651275328
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 56 (26.2 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.