Guide to the Human Genome
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Name: LOC100290784 Sequence: fasta or formatted (68aa) NCBI GI: 239750988
Description:

PREDICTED: hypothetical protein XP_002347624 isoform 2

Not currently referenced in the text

Other entries for this name:
alt prot {68aa} PREDICTED: hypothetical protein XP_002347623 isoform 1
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            13.2          9           2
 C cysteine            1.5          1           1
 D aspartate           2.9          2           1
 E glutamate          10.3          7           1
 F phenylalanine       0.0          0           0
 G glycine            14.7         10           1
 H histidine           0.0          0           0
 I isoleucine          5.9          4           1
 K lysine              1.5          1           1
 L leucine             2.9          2           1
 M methionine          8.8          6           1
 N asparagine          0.0          0           0
 P proline             5.9          4           1
 Q glutamine           1.5          1           1
 R arginine            5.9          4           1
 S serine             10.3          7           1
 T threonine           0.0          0           0
 V valine              5.9          4           1
 W tryptophan          8.8          6           1
 Y tyrosine            0.0          0           0
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002347624 isofor... 
LOC100292207          1.000   PREDICTED: hypothetical protein isoform 2 
LOC100292207          0.764   PREDICTED: hypothetical protein isoform 1 
LOC100290784          0.764   PREDICTED: hypothetical protein XP_002347623 isofor...
LOC100287385          0.537   PREDICTED: hypothetical protein XP_002343487 
POL3S                 0.016   polyserase 3 
LOC100133124          0.008   PREDICTED: similar to cytochrome c oxidase subunit ...
LOC100133124          0.008   PREDICTED: similar to cytochrome c oxidase subunit ...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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