Guide to the Human Genome
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Search of human proteins with 239745262

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|239745262 PREDICTED: hypothetical protein XP_002343372 [Homo
sapiens]
         (63 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|239745270 PREDICTED: hypothetical protein XP_002343416 [Homo ...   136   3e-33
gi|239745262 PREDICTED: hypothetical protein XP_002343372 [Homo ...   136   3e-33
gi|113425405 PREDICTED: similar to dynamin 1 [Homo sapiens]           127   2e-30
gi|239745286 PREDICTED: hypothetical protein XP_002343417 [Homo ...   117   2e-27
gi|56549117 dynamin 1 isoform 2 [Homo sapiens]                        104   2e-23
gi|59853099 dynamin 1 isoform 1 [Homo sapiens]                        104   2e-23
gi|56549125 dynamin 2 isoform 4 [Homo sapiens]                         88   2e-18
gi|56549123 dynamin 2 isoform 2 [Homo sapiens]                         88   2e-18
gi|56549121 dynamin 2 isoform 1 [Homo sapiens]                         88   2e-18
gi|56549119 dynamin 2 isoform 3 [Homo sapiens]                         88   2e-18
gi|42544243 dynamin 3 isoform a [Homo sapiens]                         86   6e-18
gi|209915561 dynamin 3 isoform b [Homo sapiens]                        86   6e-18
gi|239756350 PREDICTED: UPF0621 protein C-like [Homo sapiens]          60   4e-10
gi|239750876 PREDICTED: UPF0621 protein C-like [Homo sapiens]          60   4e-10
gi|169208224 PREDICTED: UPF0621 protein C-like [Homo sapiens]          60   4e-10
gi|239756412 PREDICTED: similar to dynamin 1, partial [Homo sapi...    36   0.006
gi|239756410 PREDICTED: similar to dynamin 1, partial [Homo sapi...    32   0.084
gi|6806893 lymphotoxin alpha precursor [Homo sapiens]                  27   4.6  
gi|229092381 lymphotoxin alpha precursor [Homo sapiens]                27   4.6  
gi|156105693 PPAR-alpha interacting complex protein 285 isoform ...    27   4.6  
gi|156105695 PPAR-alpha interacting complex protein 285 isoform ...    27   4.6  
gi|239745346 PREDICTED: hypothetical protein XP_002343442, parti...    26   7.8  

>gi|239745270 PREDICTED: hypothetical protein XP_002343416 [Homo
          sapiens]
          Length = 63

 Score =  136 bits (343), Expect = 3e-33
 Identities = 63/63 (100%), Positives = 63/63 (100%)

Query: 1  MYSCGNQNTLMEELAEQAQQHDEMLHMHHALKEALSIIGDINRTTVTMPMPPPVDDTWLS 60
          MYSCGNQNTLMEELAEQAQQHDEMLHMHHALKEALSIIGDINRTTVTMPMPPPVDDTWLS
Sbjct: 1  MYSCGNQNTLMEELAEQAQQHDEMLHMHHALKEALSIIGDINRTTVTMPMPPPVDDTWLS 60

Query: 61 EHP 63
          EHP
Sbjct: 61 EHP 63


>gi|239745262 PREDICTED: hypothetical protein XP_002343372 [Homo
          sapiens]
          Length = 63

 Score =  136 bits (343), Expect = 3e-33
 Identities = 63/63 (100%), Positives = 63/63 (100%)

Query: 1  MYSCGNQNTLMEELAEQAQQHDEMLHMHHALKEALSIIGDINRTTVTMPMPPPVDDTWLS 60
          MYSCGNQNTLMEELAEQAQQHDEMLHMHHALKEALSIIGDINRTTVTMPMPPPVDDTWLS
Sbjct: 1  MYSCGNQNTLMEELAEQAQQHDEMLHMHHALKEALSIIGDINRTTVTMPMPPPVDDTWLS 60

Query: 61 EHP 63
          EHP
Sbjct: 61 EHP 63


>gi|113425405 PREDICTED: similar to dynamin 1 [Homo sapiens]
          Length = 105

 Score =  127 bits (319), Expect = 2e-30
 Identities = 59/59 (100%), Positives = 59/59 (100%)

Query: 1  MYSCGNQNTLMEELAEQAQQHDEMLHMHHALKEALSIIGDINRTTVTMPMPPPVDDTWL 59
          MYSCGNQNTLMEELAEQAQQHDEMLHMHHALKEALSIIGDINRTTVTMPMPPPVDDTWL
Sbjct: 1  MYSCGNQNTLMEELAEQAQQHDEMLHMHHALKEALSIIGDINRTTVTMPMPPPVDDTWL 59


>gi|239745286 PREDICTED: hypothetical protein XP_002343417 [Homo
          sapiens]
          Length = 103

 Score =  117 bits (294), Expect = 2e-27
 Identities = 57/59 (96%), Positives = 57/59 (96%), Gaps = 2/59 (3%)

Query: 1  MYSCGNQNTLMEELAEQAQQHDEMLHMHHALKEALSIIGDINRTTVTMPMPPPVDDTWL 59
          MYSCGNQNTLMEELAEQAQQHDEMLHMHHALKEALSIIGDINRTTVT  MPPPVDDTWL
Sbjct: 1  MYSCGNQNTLMEELAEQAQQHDEMLHMHHALKEALSIIGDINRTTVT--MPPPVDDTWL 57


>gi|56549117 dynamin 1 isoform 2 [Homo sapiens]
          Length = 851

 Score =  104 bits (259), Expect = 2e-23
 Identities = 48/59 (81%), Positives = 54/59 (91%)

Query: 1   MYSCGNQNTLMEELAEQAQQHDEMLHMHHALKEALSIIGDINRTTVTMPMPPPVDDTWL 59
           +YSCG+QNTLMEE AEQAQ+ DEML M+HALKEALSIIGDIN TTV+ PMPPPVDD+WL
Sbjct: 705 LYSCGDQNTLMEESAEQAQRRDEMLRMYHALKEALSIIGDINTTTVSTPMPPPVDDSWL 763


>gi|59853099 dynamin 1 isoform 1 [Homo sapiens]
          Length = 864

 Score =  104 bits (259), Expect = 2e-23
 Identities = 48/59 (81%), Positives = 54/59 (91%)

Query: 1   MYSCGNQNTLMEELAEQAQQHDEMLHMHHALKEALSIIGDINRTTVTMPMPPPVDDTWL 59
           +YSCG+QNTLMEE AEQAQ+ DEML M+HALKEALSIIGDIN TTV+ PMPPPVDD+WL
Sbjct: 705 LYSCGDQNTLMEESAEQAQRRDEMLRMYHALKEALSIIGDINTTTVSTPMPPPVDDSWL 763


>gi|56549125 dynamin 2 isoform 4 [Homo sapiens]
          Length = 866

 Score = 87.8 bits (216), Expect = 2e-18
 Identities = 39/59 (66%), Positives = 52/59 (88%)

Query: 1   MYSCGNQNTLMEELAEQAQQHDEMLHMHHALKEALSIIGDINRTTVTMPMPPPVDDTWL 59
           +YS  +Q++LMEE A+QAQ+ D+ML M+HALKEAL+IIGDI+ +TV+ P+PPPVDDTWL
Sbjct: 695 LYSSADQSSLMEESADQAQRRDDMLRMYHALKEALNIIGDISTSTVSTPVPPPVDDTWL 753


>gi|56549123 dynamin 2 isoform 2 [Homo sapiens]
          Length = 870

 Score = 87.8 bits (216), Expect = 2e-18
 Identities = 39/59 (66%), Positives = 52/59 (88%)

Query: 1   MYSCGNQNTLMEELAEQAQQHDEMLHMHHALKEALSIIGDINRTTVTMPMPPPVDDTWL 59
           +YS  +Q++LMEE A+QAQ+ D+ML M+HALKEAL+IIGDI+ +TV+ P+PPPVDDTWL
Sbjct: 699 LYSSADQSSLMEESADQAQRRDDMLRMYHALKEALNIIGDISTSTVSTPVPPPVDDTWL 757


>gi|56549121 dynamin 2 isoform 1 [Homo sapiens]
          Length = 870

 Score = 87.8 bits (216), Expect = 2e-18
 Identities = 39/59 (66%), Positives = 52/59 (88%)

Query: 1   MYSCGNQNTLMEELAEQAQQHDEMLHMHHALKEALSIIGDINRTTVTMPMPPPVDDTWL 59
           +YS  +Q++LMEE A+QAQ+ D+ML M+HALKEAL+IIGDI+ +TV+ P+PPPVDDTWL
Sbjct: 699 LYSSADQSSLMEESADQAQRRDDMLRMYHALKEALNIIGDISTSTVSTPVPPPVDDTWL 757


>gi|56549119 dynamin 2 isoform 3 [Homo sapiens]
          Length = 866

 Score = 87.8 bits (216), Expect = 2e-18
 Identities = 39/59 (66%), Positives = 52/59 (88%)

Query: 1   MYSCGNQNTLMEELAEQAQQHDEMLHMHHALKEALSIIGDINRTTVTMPMPPPVDDTWL 59
           +YS  +Q++LMEE A+QAQ+ D+ML M+HALKEAL+IIGDI+ +TV+ P+PPPVDDTWL
Sbjct: 695 LYSSADQSSLMEESADQAQRRDDMLRMYHALKEALNIIGDISTSTVSTPVPPPVDDTWL 753


>gi|42544243 dynamin 3 isoform a [Homo sapiens]
          Length = 863

 Score = 85.9 bits (211), Expect = 6e-18
 Identities = 40/59 (67%), Positives = 48/59 (81%)

Query: 1   MYSCGNQNTLMEELAEQAQQHDEMLHMHHALKEALSIIGDINRTTVTMPMPPPVDDTWL 59
           +YS  +QNTLMEE AEQAQ+ DEML M+ ALKEAL IIGDI+  TV+ P PPPVDD+W+
Sbjct: 699 LYSSEDQNTLMEESAEQAQRRDEMLRMYQALKEALGIIGDISTATVSTPAPPPVDDSWI 757


>gi|209915561 dynamin 3 isoform b [Homo sapiens]
          Length = 859

 Score = 85.9 bits (211), Expect = 6e-18
 Identities = 40/59 (67%), Positives = 48/59 (81%)

Query: 1   MYSCGNQNTLMEELAEQAQQHDEMLHMHHALKEALSIIGDINRTTVTMPMPPPVDDTWL 59
           +YS  +QNTLMEE AEQAQ+ DEML M+ ALKEAL IIGDI+  TV+ P PPPVDD+W+
Sbjct: 695 LYSSEDQNTLMEESAEQAQRRDEMLRMYQALKEALGIIGDISTATVSTPAPPPVDDSWI 753


>gi|239756350 PREDICTED: UPF0621 protein C-like [Homo sapiens]
          Length = 135

 Score = 60.1 bits (144), Expect = 4e-10
 Identities = 28/49 (57%), Positives = 37/49 (75%)

Query: 1   MYSCGNQNTLMEELAEQAQQHDEMLHMHHALKEALSIIGDINRTTVTMP 49
           +YSCG++N LME+  EQA+  +E L MHH L+EA +IIGDI  T V+MP
Sbjct: 82  LYSCGDENMLMEDSTEQAKWCNETLCMHHVLREAPNIIGDIKTTMVSMP 130


>gi|239750876 PREDICTED: UPF0621 protein C-like [Homo sapiens]
          Length = 135

 Score = 60.1 bits (144), Expect = 4e-10
 Identities = 28/49 (57%), Positives = 37/49 (75%)

Query: 1   MYSCGNQNTLMEELAEQAQQHDEMLHMHHALKEALSIIGDINRTTVTMP 49
           +YSCG++N LME+  EQA+  +E L MHH L+EA +IIGDI  T V+MP
Sbjct: 82  LYSCGDENMLMEDSTEQAKWCNETLCMHHVLREAPNIIGDIKTTMVSMP 130


>gi|169208224 PREDICTED: UPF0621 protein C-like [Homo sapiens]
          Length = 155

 Score = 60.1 bits (144), Expect = 4e-10
 Identities = 28/49 (57%), Positives = 37/49 (75%)

Query: 1   MYSCGNQNTLMEELAEQAQQHDEMLHMHHALKEALSIIGDINRTTVTMP 49
           +YSCG++N LME+  EQA+  +E L MHH L+EA +IIGDI  T V+MP
Sbjct: 102 LYSCGDENMLMEDSTEQAKWCNETLCMHHVLREAPNIIGDIKTTMVSMP 150


>gi|239756412 PREDICTED: similar to dynamin 1, partial [Homo
           sapiens]
          Length = 350

 Score = 36.2 bits (82), Expect = 0.006
 Identities = 19/36 (52%), Positives = 26/36 (72%)

Query: 1   MYSCGNQNTLMEELAEQAQQHDEMLHMHHALKEALS 36
           +YS  N  TL+EE AEQAQ+ DEML +  A++ AL+
Sbjct: 158 LYSRRNLQTLVEESAEQAQRCDEMLLLRAAVQPALA 193



 Score = 36.2 bits (82), Expect = 0.006
 Identities = 19/36 (52%), Positives = 26/36 (72%)

Query: 1   MYSCGNQNTLMEELAEQAQQHDEMLHMHHALKEALS 36
           +YS  N  TL+EE AEQAQ+ DEML +  A++ AL+
Sbjct: 303 LYSRRNLQTLVEESAEQAQRCDEMLLLRAAVQPALA 338



 Score = 33.9 bits (76), Expect = 0.029
 Identities = 15/23 (65%), Positives = 19/23 (82%)

Query: 1   MYSCGNQNTLMEELAEQAQQHDE 23
           ++S GN+ TLMEE AEQAQ+ DE
Sbjct: 251 LHSRGNEKTLMEESAEQAQRRDE 273



 Score = 30.8 bits (68), Expect = 0.24
 Identities = 14/19 (73%), Positives = 16/19 (84%)

Query: 5   GNQNTLMEELAEQAQQHDE 23
           GN+ TLMEE AEQAQ+ DE
Sbjct: 110 GNEKTLMEESAEQAQRCDE 128



 Score = 25.8 bits (55), Expect = 7.8
 Identities = 12/25 (48%), Positives = 17/25 (68%)

Query: 1  MYSCGNQNTLMEELAEQAQQHDEML 25
          ++S GN+ TL+E  AEQA Q   +L
Sbjct: 15 LHSRGNEKTLVEASAEQADQGVHLL 39


>gi|239756410 PREDICTED: similar to dynamin 1, partial [Homo
           sapiens]
          Length = 191

 Score = 32.3 bits (72), Expect = 0.084
 Identities = 14/23 (60%), Positives = 19/23 (82%)

Query: 1   MYSCGNQNTLMEELAEQAQQHDE 23
           ++S GN+ TL+EE AEQAQ+ DE
Sbjct: 106 LHSRGNEKTLVEESAEQAQRRDE 128



 Score = 30.4 bits (67), Expect = 0.32
 Identities = 14/25 (56%), Positives = 18/25 (72%)

Query: 1   MYSCGNQNTLMEELAEQAQQHDEML 25
           +YS GN+ TL+EE AEQA Q   +L
Sbjct: 158 LYSRGNEKTLLEESAEQADQGVHLL 182



 Score = 27.7 bits (60), Expect = 2.1
 Identities = 13/25 (52%), Positives = 17/25 (68%)

Query: 1  MYSCGNQNTLMEELAEQAQQHDEML 25
          +YS GN+ TL+E  AEQA Q   +L
Sbjct: 15 LYSRGNEKTLVEASAEQADQGVHLL 39


>gi|6806893 lymphotoxin alpha precursor [Homo sapiens]
          Length = 205

 Score = 26.6 bits (57), Expect = 4.6
 Identities = 13/31 (41%), Positives = 17/31 (54%)

Query: 10 LMEELAEQAQQHDEMLHMHHALKEALSIIGD 40
          L    A+ A+QH +M   H  LK A  +IGD
Sbjct: 40 LTPSAAQTARQHPKMHLAHSTLKPAAHLIGD 70


>gi|229092381 lymphotoxin alpha precursor [Homo sapiens]
          Length = 205

 Score = 26.6 bits (57), Expect = 4.6
 Identities = 13/31 (41%), Positives = 17/31 (54%)

Query: 10 LMEELAEQAQQHDEMLHMHHALKEALSIIGD 40
          L    A+ A+QH +M   H  LK A  +IGD
Sbjct: 40 LTPSAAQTARQHPKMHLAHSTLKPAAHLIGD 70


>gi|156105693 PPAR-alpha interacting complex protein 285 isoform 1
            [Homo sapiens]
          Length = 2649

 Score = 26.6 bits (57), Expect = 4.6
 Identities = 20/72 (27%), Positives = 29/72 (40%), Gaps = 17/72 (23%)

Query: 9    TLMEELAEQAQQHDEMLHMHHALK----EALSIIGDI-------------NRTTVTMPMP 51
            +L   LA+  Q+    LH+   LK    + L  + D+             NR T+  P P
Sbjct: 1711 SLQHALAQSYQRRARSLHLAVQLKAQPLDKLGFVVDVEAGSRCFRLLFPSNRETLPDPCP 1770

Query: 52   PPVDDTWLSEHP 63
             P     L+EHP
Sbjct: 1771 VPYGSLQLAEHP 1782


>gi|156105695 PPAR-alpha interacting complex protein 285 isoform 2
            [Homo sapiens]
          Length = 2080

 Score = 26.6 bits (57), Expect = 4.6
 Identities = 20/72 (27%), Positives = 29/72 (40%), Gaps = 17/72 (23%)

Query: 9    TLMEELAEQAQQHDEMLHMHHALK----EALSIIGDI-------------NRTTVTMPMP 51
            +L   LA+  Q+    LH+   LK    + L  + D+             NR T+  P P
Sbjct: 1142 SLQHALAQSYQRRARSLHLAVQLKAQPLDKLGFVVDVEAGSRCFRLLFPSNRETLPDPCP 1201

Query: 52   PPVDDTWLSEHP 63
             P     L+EHP
Sbjct: 1202 VPYGSLQLAEHP 1213


>gi|239745346 PREDICTED: hypothetical protein XP_002343442,
          partial [Homo sapiens]
          Length = 56

 Score = 25.8 bits (55), Expect = 7.8
 Identities = 12/25 (48%), Positives = 17/25 (68%)

Query: 1  MYSCGNQNTLMEELAEQAQQHDEML 25
          ++S GN+ TL+E  AEQA Q   +L
Sbjct: 15 LHSRGNEKTLVEASAEQADQGVHLL 39


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.315    0.128    0.395 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,765,978
Number of Sequences: 37866
Number of extensions: 85822
Number of successful extensions: 395
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 368
Number of HSP's gapped (non-prelim): 28
length of query: 63
length of database: 18,247,518
effective HSP length: 36
effective length of query: 27
effective length of database: 16,884,342
effective search space: 455877234
effective search space used: 455877234
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (25.8 bits)

Search results were obtained with NCBI BLAST and RefSeq entries.


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Guide to the Human Genome
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