Guide to the Human Genome
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Search of human proteins with 239744639

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|239744639 PREDICTED: hypothetical protein XP_002343210 [Homo
sapiens]
         (258 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|239755832 PREDICTED: hypothetical protein [Homo sapiens]           520   e-148
gi|239744639 PREDICTED: hypothetical protein XP_002343210 [Homo ...   520   e-148
gi|239753407 PREDICTED: hypothetical protein [Homo sapiens]            40   0.002
gi|83367077 mucin 16 [Homo sapiens]                                    39   0.003
gi|169658378 trinucleotide repeat containing 18 [Homo sapiens]         38   0.008
gi|169173184 PREDICTED: hypothetical protein [Homo sapiens]            37   0.013
gi|169211815 PREDICTED: keratin associated protein 4.6 [Homo sap...    37   0.017
gi|118572613 splicing coactivator subunit SRm300 [Homo sapiens]        37   0.017
gi|46852388 cell-cycle and apoptosis regulatory protein 1 [Homo ...    37   0.022
gi|169162152 PREDICTED: hypothetical protein [Homo sapiens]            37   0.022
gi|169161145 PREDICTED: hypothetical protein [Homo sapiens]            37   0.022
gi|239757130 PREDICTED: hypothetical protein FLJ22184 [Homo sapi...    36   0.029
gi|89040432 PREDICTED: hypothetical protein [Homo sapiens]             36   0.029
gi|122937251 lysine (K)-specific demethylase 6B [Homo sapiens]         35   0.085
gi|111120318 NK6 transcription factor related, locus 1 [Homo sap...    35   0.085
gi|161016767 mucin 21 [Homo sapiens]                                   35   0.085
gi|33188461 GATA binding protein 4 [Homo sapiens]                      34   0.11 
gi|73858561 proline/serine-rich coiled-coil 1 isoform a [Homo sa...    34   0.14 
gi|14249168 proline/serine-rich coiled-coil 1 isoform a [Homo sa...    34   0.14 
gi|32698692 zinc finger, DHHC domain containing 8 [Homo sapiens]       34   0.14 
gi|226437579 NAC alpha domain containing [Homo sapiens]                33   0.19 
gi|4506943 short stature homeobox isoform SHOXa [Homo sapiens]         33   0.19 
gi|34365793 WNK lysine deficient protein kinase 4 [Homo sapiens]       33   0.19 
gi|239754540 PREDICTED: NAC alpha domain containing [Homo sapiens]     33   0.19 
gi|239749931 PREDICTED: FLJ43861 protein [Homo sapiens]                33   0.19 
gi|239749105 PREDICTED: NAC alpha domain containing [Homo sapiens]     33   0.19 
gi|239743134 PREDICTED: NAC alpha domain containing [Homo sapiens]     33   0.19 
gi|239508792 PREDICTED: NAC alpha domain containing [Homo sapiens]     33   0.19 
gi|95147342 chromodomain helicase DNA binding protein 9 [Homo sa...    33   0.19 
gi|4885407 hyperpolarization activated cyclic nucleotide-gated p...    33   0.25 

>gi|239755832 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 258

 Score =  520 bits (1338), Expect = e-148
 Identities = 258/258 (100%), Positives = 258/258 (100%)

Query: 1   MLRNLGFSSARRPLARACWVKVEASQSRTSEGTASDRSSCSSSSVSKICLRPQKGSHRGK 60
           MLRNLGFSSARRPLARACWVKVEASQSRTSEGTASDRSSCSSSSVSKICLRPQKGSHRGK
Sbjct: 1   MLRNLGFSSARRPLARACWVKVEASQSRTSEGTASDRSSCSSSSVSKICLRPQKGSHRGK 60

Query: 61  TAGSLRSLPPIPGPGTYRDRSLIHIFLLGADFSSRGDGQSDSSSISGGLRGDSSMLSHGP 120
           TAGSLRSLPPIPGPGTYRDRSLIHIFLLGADFSSRGDGQSDSSSISGGLRGDSSMLSHGP
Sbjct: 61  TAGSLRSLPPIPGPGTYRDRSLIHIFLLGADFSSRGDGQSDSSSISGGLRGDSSMLSHGP 120

Query: 121 SHLRLAWTSQAGVSRLGPSWQSCSSCGSSSPAAQPSFGLPVQALRTAAAAAATAAAAARC 180
           SHLRLAWTSQAGVSRLGPSWQSCSSCGSSSPAAQPSFGLPVQALRTAAAAAATAAAAARC
Sbjct: 121 SHLRLAWTSQAGVSRLGPSWQSCSSCGSSSPAAQPSFGLPVQALRTAAAAAATAAAAARC 180

Query: 181 QSRLLASLLLPRPGSPLPLLSLPSPQPARQSLTPHSHSSPSQRNDWKPGAHTDRSAQGRA 240
           QSRLLASLLLPRPGSPLPLLSLPSPQPARQSLTPHSHSSPSQRNDWKPGAHTDRSAQGRA
Sbjct: 181 QSRLLASLLLPRPGSPLPLLSLPSPQPARQSLTPHSHSSPSQRNDWKPGAHTDRSAQGRA 240

Query: 241 HAHRRRGRVAACALYWRM 258
           HAHRRRGRVAACALYWRM
Sbjct: 241 HAHRRRGRVAACALYWRM 258


>gi|239744639 PREDICTED: hypothetical protein XP_002343210 [Homo
           sapiens]
          Length = 258

 Score =  520 bits (1338), Expect = e-148
 Identities = 258/258 (100%), Positives = 258/258 (100%)

Query: 1   MLRNLGFSSARRPLARACWVKVEASQSRTSEGTASDRSSCSSSSVSKICLRPQKGSHRGK 60
           MLRNLGFSSARRPLARACWVKVEASQSRTSEGTASDRSSCSSSSVSKICLRPQKGSHRGK
Sbjct: 1   MLRNLGFSSARRPLARACWVKVEASQSRTSEGTASDRSSCSSSSVSKICLRPQKGSHRGK 60

Query: 61  TAGSLRSLPPIPGPGTYRDRSLIHIFLLGADFSSRGDGQSDSSSISGGLRGDSSMLSHGP 120
           TAGSLRSLPPIPGPGTYRDRSLIHIFLLGADFSSRGDGQSDSSSISGGLRGDSSMLSHGP
Sbjct: 61  TAGSLRSLPPIPGPGTYRDRSLIHIFLLGADFSSRGDGQSDSSSISGGLRGDSSMLSHGP 120

Query: 121 SHLRLAWTSQAGVSRLGPSWQSCSSCGSSSPAAQPSFGLPVQALRTAAAAAATAAAAARC 180
           SHLRLAWTSQAGVSRLGPSWQSCSSCGSSSPAAQPSFGLPVQALRTAAAAAATAAAAARC
Sbjct: 121 SHLRLAWTSQAGVSRLGPSWQSCSSCGSSSPAAQPSFGLPVQALRTAAAAAATAAAAARC 180

Query: 181 QSRLLASLLLPRPGSPLPLLSLPSPQPARQSLTPHSHSSPSQRNDWKPGAHTDRSAQGRA 240
           QSRLLASLLLPRPGSPLPLLSLPSPQPARQSLTPHSHSSPSQRNDWKPGAHTDRSAQGRA
Sbjct: 181 QSRLLASLLLPRPGSPLPLLSLPSPQPARQSLTPHSHSSPSQRNDWKPGAHTDRSAQGRA 240

Query: 241 HAHRRRGRVAACALYWRM 258
           HAHRRRGRVAACALYWRM
Sbjct: 241 HAHRRRGRVAACALYWRM 258


>gi|239753407 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 182

 Score = 40.4 bits (93), Expect = 0.002
 Identities = 41/137 (29%), Positives = 58/137 (42%), Gaps = 18/137 (13%)

Query: 103 SSISGGLRGDSSMLSHGPSHLRLAWTSQAGVSRLGPSWQSCSSCGSSSPAAQPSFGLPV- 161
           S + GG R  +S  +  P  L  + +S +G S         S  G S  A QP+ G  + 
Sbjct: 26  SGVQGGQRNSTSARAPPPPPLAPSSSSSSGSS-------GSSGGGGSGSAGQPTLGSMLA 78

Query: 162 --QALRTAAAAAATAAAAARCQSR-----LLASLLLPRPG--SPLPLLSLPSPQPARQSL 212
              A R A+  A   A     ++R     LL     P+PG   P     LPSP P  ++ 
Sbjct: 79  VGSAARRASERAGGRAGGTALRAREPPPPLLPPPSPPQPGPKGPASPRPLPSPLPLLET- 137

Query: 213 TPHSHSSPSQRNDWKPG 229
           TP    +PS+R D + G
Sbjct: 138 TPFPPDTPSRRQDRRGG 154


>gi|83367077 mucin 16 [Homo sapiens]
          Length = 14507

 Score = 39.3 bits (90), Expect = 0.003
 Identities = 39/142 (27%), Positives = 58/142 (40%), Gaps = 33/142 (23%)

Query: 94   SRGDGQSDSSSISGGLRGDSSMLSHGPSHLRLAWTSQAGVSRLGPSWQSCSSCGSSSPAA 153
            S+G   S+ +++     GD S ++  P        + +G S + PS  S S   S+SP +
Sbjct: 5598 SQGFPHSEITTLRSRTPGDVSWMTTPPVE-----ETSSGFSLMSPSMTSPSPVSSTSPES 5652

Query: 154  QPSFGLPVQALRTAAAAAATAAAAARCQSRLLASLLLPRPGSPLPLLSLPSPQPARQSLT 213
             PS  LPV AL T+     T                         +L   SP+P   S  
Sbjct: 5653 IPSSPLPVTALLTSVLVTTT------------------------NVLGTTSPEPVTSS-- 5686

Query: 214  PHSHSSPSQR--NDWKPGAHTD 233
            P + SSP+Q     +K  AHT+
Sbjct: 5687 PPNLSSPTQERLTTYKDTAHTE 5708



 Score = 31.6 bits (70), Expect = 0.72
 Identities = 31/126 (24%), Positives = 52/126 (41%), Gaps = 12/126 (9%)

Query: 94   SRGDGQSDSSSISGGLRGDSSMLSHGPSHLRLAWTSQAGVSRLGPSWQSCSSCGSSSPAA 153
            ++G   S+ +++ G   G+ S ++  P    +  TS        P+  S S   S+SP +
Sbjct: 5302 TQGFPYSEVTTLMGMGPGNVSWMTTPP----VEETSSVSSLMSSPAMTSPSPVSSTSPQS 5357

Query: 154  QPSFGLPVQALRTAAAAAATAAAAARCQSRLLASLLLPRPGSPLPLLSLPSPQPARQSLT 213
             PS  LPV AL T+     T          + +        SP  L S+   +PA    T
Sbjct: 5358 IPSSPLPVTALPTSVLVTTTDVLGTTSPESVTS--------SPPNLSSITHERPATYKDT 5409

Query: 214  PHSHSS 219
             H+ ++
Sbjct: 5410 AHTEAA 5415


>gi|169658378 trinucleotide repeat containing 18 [Homo sapiens]
          Length = 2968

 Score = 38.1 bits (87), Expect = 0.008
 Identities = 57/222 (25%), Positives = 78/222 (35%), Gaps = 33/222 (14%)

Query: 23   EASQSRTSEGTASDRSSCSSSSVSKICLRPQKGSHRGKTAGSLRSLPPIPGPGTYRDRSL 82
            E S+S +S  + S  SS SSSS        ++G   G             G GT      
Sbjct: 2555 EESESSSSSSSGSSSSSSSSSSSGSETEGEEEGDKNGDG-----------GCGTGGRNC- 2602

Query: 83   IHIFLLGADFSSRGDGQSDSSSISGGLRGDSSMLSHGPSHLRLAWTSQAGVSRLGPSWQS 142
                   +  SSR    + SSS S      SS  S   S    + +S +  S    S  S
Sbjct: 2603 -------SAASSRAASPASSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS 2655

Query: 143  CSSCGSSSPAAQPSFGLPVQ----ALRTAAAAAATAAAAARC---------QSRLLASLL 189
             SS  SSS ++  S     +    +    AA A TA  +A+            +   S  
Sbjct: 2656 SSSSSSSSSSSSSSSSTTDEDSSCSSDDEAAPAPTAGPSAQAALPTKATKQAGKARPSAH 2715

Query: 190  LPRPGSPLPLLSLPSPQPARQSLTPHSHSSPSQRNDWKPGAH 231
             P   +P P    P PQP  Q L P + +    R   + G H
Sbjct: 2716 SPGKKTPAPQPQAPPPQPT-QPLQPKAQAGAKSRPKKREGVH 2756


>gi|169173184 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 1230

 Score = 37.4 bits (85), Expect = 0.013
 Identities = 48/190 (25%), Positives = 74/190 (38%), Gaps = 8/190 (4%)

Query: 17  ACWVKVEASQSRTSEGTASDRSSCSSSSVSKICLRPQKGSHRGKTAGSLRSLPPIPGPGT 76
           A WV    S++ TS  +    SS S  S++         +    ++ S  S P   G  +
Sbjct: 253 ASWVSTSTSRASTSSDSGWASSSASWDSITSDSGWVCPSASWASSSASWASAPSDSGSSS 312

Query: 77  YRDRSLIHIFLLG-ADFSSRG-DGQSDSSSISGGLRGDSSMLSHG---PSHLRLAWTSQA 131
                   + + G A FS+ G    SDS   S    G S+    G   PS    + +S +
Sbjct: 313 PSVSRASTLSVSGWASFSASGASAPSDSGWTSHSASGVSTTSDSGWASPSASGASTSSDS 372

Query: 132 GVSRLGPSWQSCSSCGSSSPAAQPSFGLPVQALRTAAAAAATAAAAARCQSRLLASLLLP 191
           G +    SW S S+ G+S+P+     G    +   A+  +A +     C  +L A     
Sbjct: 373 GWASPSASWASPSASGASTPS---DSGWASPSASGASMPSAPSLCPGSCFPQLTARTGFT 429

Query: 192 RPGSPLPLLS 201
             G P  LLS
Sbjct: 430 VVGFPFSLLS 439


>gi|169211815 PREDICTED: keratin associated protein 4.6 [Homo
           sapiens]
          Length = 288

 Score = 37.0 bits (84), Expect = 0.017
 Identities = 30/79 (37%), Positives = 38/79 (48%), Gaps = 15/79 (18%)

Query: 137 GPSWQSCSSCGSSSPAAQPSFGLPVQ----ALRTAAAAAATAAAAARCQSRLLASLLLPR 192
           GPS  + S C +S PAA P+   P      A+  AAAA A AA AA C   +  S     
Sbjct: 205 GPS--AASLCAASQPAAVPAAASPAAAAPLAVNPAAAARAAAAPAAACVQSVAES----- 257

Query: 193 PGSPL----PLLSLPSPQP 207
           P +PL    P+   P+P P
Sbjct: 258 PATPLAIAQPVSFPPAPVP 276


>gi|118572613 splicing coactivator subunit SRm300 [Homo sapiens]
          Length = 2752

 Score = 37.0 bits (84), Expect = 0.017
 Identities = 62/233 (26%), Positives = 86/233 (36%), Gaps = 51/233 (21%)

Query: 24   ASQSRTSEGTASDRSSCSSSSVSKICLRPQKGSHR------GKTAGSLRSLPPIPGPGTY 77
            +S S +S  ++S  SS S S  S + ++P+    R                PP P P   
Sbjct: 2544 SSSSSSSSSSSSSGSSSSDSEGSSLPVQPEVALKRVPSPTPAPKEAVREGRPPEPTPAKR 2603

Query: 78   RDRSLIHIFLLGADFSSRGDGQSDSSSISGGLRGDSSMLSHGPSHLRLAWTSQAGVSRLG 137
            + RS           SS     S SSS S      SS  S                    
Sbjct: 2604 KRRS-----------SSSSSSSSSSSSSSSSSSSSSSSSS-------------------- 2632

Query: 138  PSWQSCSSCGSSSPAAQPSFGLP-VQALRTAAAAAATAAAAARCQS--RLLASLLLPRPG 194
             S  S SS  SSS ++ PS   P  QAL   A+         R +S  + + SL   R  
Sbjct: 2633 -SSSSSSSSSSSSSSSSPSPAKPGPQALPKPASPKKPPPGERRSRSPRKPIDSLRDSRSL 2691

Query: 195  SPLPL-LSLPSPQPARQSLTPHSHSSPSQRNDWKPGAHTDRSAQGRAHAHRRR 246
            S  P+    PSPQP+ +       SS S+R     G+   +    R+ +H+RR
Sbjct: 2692 SYSPVERRRPSPQPSPRD----QQSSSSER-----GSRRGQRGDSRSPSHKRR 2735


>gi|46852388 cell-cycle and apoptosis regulatory protein 1 [Homo
           sapiens]
          Length = 1150

 Score = 36.6 bits (83), Expect = 0.022
 Identities = 30/102 (29%), Positives = 40/102 (39%), Gaps = 5/102 (4%)

Query: 152 AAQPSFGLPVQALRTAAAAAATAAAAARCQSRLLASLLLPRPGSPLPLLSLP-----SPQ 206
           A Q +FG+  Q    +   A  +AA+     +     LL +P     LL  P      PQ
Sbjct: 231 APQTTFGVQTQPQPQSLLQAQISAASITPLLQTQPQPLLQQPQQKAGLLQPPVRIVSQPQ 290

Query: 207 PARQSLTPHSHSSPSQRNDWKPGAHTDRSAQGRAHAHRRRGR 248
           PAR+   P   S  + R D  P    DRS +      R R R
Sbjct: 291 PARRLDPPSRFSGRNDRGDQVPNRKDDRSRERERERRRSRER 332


>gi|169162152 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 520

 Score = 36.6 bits (83), Expect = 0.022
 Identities = 36/117 (30%), Positives = 46/117 (39%), Gaps = 9/117 (7%)

Query: 147 GSSSPAAQPSFGLPVQALRTAAAAAATAAAAARCQSRL---LASLLLPRPGSPLPLLSLP 203
           G+  PAA+ S   P  A    A+A + AA+ AR    L   L S   PR  +PL     P
Sbjct: 244 GAERPAARGSAQQPPLARLLLASAVSLAASLARSPPPLQPRLGSASPPRLAAPLAGSRAP 303

Query: 204 SPQP------ARQSLTPHSHSSPSQRNDWKPGAHTDRSAQGRAHAHRRRGRVAACAL 254
           S  P       R   +P  H  P  R+  + G       +      R RGR   CAL
Sbjct: 304 SLSPFPRRCRRRAERSPAGHGLPLPRSLSRGGEVVGARRRRGGEERRVRGRRQGCAL 360


>gi|169161145 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 520

 Score = 36.6 bits (83), Expect = 0.022
 Identities = 36/117 (30%), Positives = 46/117 (39%), Gaps = 9/117 (7%)

Query: 147 GSSSPAAQPSFGLPVQALRTAAAAAATAAAAARCQSRL---LASLLLPRPGSPLPLLSLP 203
           G+  PAA+ S   P  A    A+A + AA+ AR    L   L S   PR  +PL     P
Sbjct: 244 GAERPAARGSAQQPPLARLLLASAVSLAASLARSPPPLQPRLGSASPPRLAAPLAGSRAP 303

Query: 204 SPQP------ARQSLTPHSHSSPSQRNDWKPGAHTDRSAQGRAHAHRRRGRVAACAL 254
           S  P       R   +P  H  P  R+  + G       +      R RGR   CAL
Sbjct: 304 SLSPFPRRCRRRAERSPAGHGLPLPRSLSRGGEVVGARRRRGGEERRVRGRRQGCAL 360


>gi|239757130 PREDICTED: hypothetical protein FLJ22184 [Homo
           sapiens]
          Length = 855

 Score = 36.2 bits (82), Expect = 0.029
 Identities = 24/74 (32%), Positives = 32/74 (43%)

Query: 148 SSSPAAQPSFGLPVQALRTAAAAAATAAAAARCQSRLLASLLLPRPGSPLPLLSLPSPQP 207
           SSSP A PS    +Q+       A   +++  CQ      L  P P +P  L +LPSP  
Sbjct: 300 SSSPLATPSPSAALQSQAPPTLPATPHSSSLTCQLATPLPLAPPSPSAPPSLQTLPSPPA 359

Query: 208 ARQSLTPHSHSSPS 221
              S    S  SP+
Sbjct: 360 TPPSQATTSLGSPT 373



 Score = 28.5 bits (62), Expect = 6.1
 Identities = 26/86 (30%), Positives = 34/86 (39%), Gaps = 11/86 (12%)

Query: 150 SPAAQPSFGLPVQALRTAAAAAATAAAAARCQ-------SRLLASLLLPRPGSP----LP 198
           SP+A PS         T  + A T+  +   Q       S  L+ L  P P +P    LP
Sbjct: 344 SPSAPPSLQTLPSPPATPPSQATTSLGSPTLQATHSFLPSPPLSPLATPPPQAPPALALP 403

Query: 199 LLSLPSPQPARQSLTPHSHSSPSQRN 224
            L  P   PA   L+P +  SP   N
Sbjct: 404 PLQAPPSPPASPPLSPLATPSPQAPN 429


>gi|89040432 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 212

 Score = 36.2 bits (82), Expect = 0.029
 Identities = 34/125 (27%), Positives = 46/125 (36%), Gaps = 18/125 (14%)

Query: 96  GDGQSDSSSISGGLRGDSSMLSHGPSHLRLAWTSQAGVSRLGPSWQSCSSCGSSSPAAQP 155
           G  Q  S+    G  G  S   HG   L     + A    +GP W     C S +   + 
Sbjct: 57  GSAQPISAPEGRGGAGSRSRYCHGDGKL-----AAAAAGTVGPRWLPAGQCLSEAERPRR 111

Query: 156 SFGLPVQALRTAAAAAATAAAAARCQSR-------------LLASLLLPRPGSPLPLLSL 202
                 ++   AA+ AA++ A +R +S               L  L  PRP S  P L  
Sbjct: 112 PEPGGARSRPVAASPAASSRARSRPESSPGAPGSSVPALLPSLPPLAAPRPLSARPRLRP 171

Query: 203 PSPQP 207
           P PQP
Sbjct: 172 PQPQP 176


>gi|122937251 lysine (K)-specific demethylase 6B [Homo sapiens]
          Length = 1682

 Score = 34.7 bits (78), Expect = 0.085
 Identities = 46/170 (27%), Positives = 60/170 (35%), Gaps = 35/170 (20%)

Query: 100 SDSSSISGGLRG-DSSMLSHGPSHLRLAWTSQAGVSRLGPSWQSCSSCGSSSPAAQPSFG 158
           S SSS + GLRG + +    G  H +      +   RLGPS  S       +PAA P   
Sbjct: 401 SSSSSSNTGLRGVEPNPGIPGADHYQTPALEVSHHGRLGPSAHSSRKPFLGAPAATPHLS 460

Query: 159 LP-----------VQALRTAAAAA---ATAAAAARCQSRLLASLLLPRPGSPLPLLSLPS 204
           LP            + LR     A     A  AAR    +L  L     G P P    P 
Sbjct: 461 LPPGPSSPPPPPCPRLLRPPPPPAWLKGPACRAAREDGEILEELFFGTEGPPRP---APP 517

Query: 205 PQPARQSL-----------TPHSHSSPSQRNDWKPGAHTDRSAQGRAHAH 243
           P P R+             T  SH+ P+      P   T  S+   + +H
Sbjct: 518 PLPHREGFLGPPASRFSVGTQDSHTPPT------PPTPTTSSSNSNSGSH 561


>gi|111120318 NK6 transcription factor related, locus 1 [Homo
           sapiens]
          Length = 367

 Score = 34.7 bits (78), Expect = 0.085
 Identities = 43/133 (32%), Positives = 53/133 (39%), Gaps = 33/133 (24%)

Query: 100 SDSSSISGGLRGDSSMLSHGPSHLRLAWTSQAGVSRLGPSWQSCSSC------------- 146
           S SSS S        + +H P  L+   T   G+S LG   Q  S+              
Sbjct: 49  SSSSSSSSSSSPSPPLGTHNPGGLKPPATG--GLSSLGSPPQQLSAATPHGINDILSRPS 106

Query: 147 -----GSSSPAAQPS-------FGLPVQALRTAAAAAATAAAAARCQSRLLASLLLPRPG 194
                G++ P+A PS             +   AAAAAA AAAAA   + LLA   LPR  
Sbjct: 107 MPVASGAALPSASPSGSSSSSSSSASASSASAAAAAAAAAAAAASSPAGLLAG--LPRFS 164

Query: 195 SPLPLLSLPSPQP 207
           S    LS P P P
Sbjct: 165 S----LSPPPPPP 173


>gi|161016767 mucin 21 [Homo sapiens]
          Length = 566

 Score = 34.7 bits (78), Expect = 0.085
 Identities = 52/215 (24%), Positives = 85/215 (39%), Gaps = 9/215 (4%)

Query: 23  EASQSRTSEGTASD-RSSCSSSSVSKICLRPQKGSHRG-KTAGSLRSLPPIPGPGTYRDR 80
           E+S + +  GTA++  SS  SS +S +          G  TA +  S     G  T  + 
Sbjct: 259 ESSTTSSGAGTATNSESSTVSSGISTVTNSESSTPSSGANTATNSESSTTSSGANTATN- 317

Query: 81  SLIHIFLLGADFSSRGDGQSDSSSISGGLRGDSSMLSHGPSHLRLAW--TSQAGVSRLGP 138
           S       GA  ++  +  + SS  S     +SS  S G S    +   T+ +G S    
Sbjct: 318 SDSSTTSSGASTATNSESSTTSSGASTATNSESSTTSSGASTATNSGSSTTSSGTSTATN 377

Query: 139 SWQSCSSCGSS----SPAAQPSFGLPVQALRTAAAAAATAAAAARCQSRLLASLLLPRPG 194
           S  S  S G+S    S ++  S G        ++  ++ A+ A   +S   +S       
Sbjct: 378 SESSTVSSGASTATTSESSTTSSGASTATNSESSTVSSGASTATNSESSTTSSGANTATN 437

Query: 195 SPLPLLSLPSPQPARQSLTPHSHSSPSQRNDWKPG 229
           S   + S  S   A   +   SHS+ +  ++ KPG
Sbjct: 438 SGSSVTSAGSGTAALTGMHTTSHSASTAVSEAKPG 472


>gi|33188461 GATA binding protein 4 [Homo sapiens]
          Length = 442

 Score = 34.3 bits (77), Expect = 0.11
 Identities = 29/98 (29%), Positives = 37/98 (37%), Gaps = 14/98 (14%)

Query: 87  LLGADFSSRGDGQSDSSSISGGLRGDSSMLSHGPSHLRLAWTSQAGVSRLGPSWQSCSSC 146
           +LG  +   G   S S   SGG  G ++    GP           G  +  P W    + 
Sbjct: 48  VLGLSYLQGGGAGSASGGASGGSSGGAAS-GAGP-----------GTQQGSPGWSQAGAD 95

Query: 147 GSS--SPAAQPSFGLPVQALRTAAAAAATAAAAARCQS 182
           G++   P   P F  P      AAAAAA AA  A   S
Sbjct: 96  GAAYTPPPVSPRFSFPGTTGSLAAAAAAAAAREAAAYS 133


>gi|73858561 proline/serine-rich coiled-coil 1 isoform a [Homo
           sapiens]
          Length = 333

 Score = 33.9 bits (76), Expect = 0.14
 Identities = 30/103 (29%), Positives = 44/103 (42%), Gaps = 5/103 (4%)

Query: 117 SHGPSHLRLAWTSQAGVSRLGPSWQSCSSCGSSSPAAQPSFGLPVQALRTAAAAAATAAA 176
           S  P+   L  ++     R GPS ++ +S     P    S   P  +   +        A
Sbjct: 184 SKSPASSPLTRSTPPVRGRAGPSGRAAAS----PPTPIRSVLAPQPSTSNSQRLPRPQGA 239

Query: 177 AARCQSRLLASLLLPRPGSPLPLLSLPSPQPARQSLTPHSHSS 219
           AA+  S+L     +PRP S +PL S   P P R +L P S S+
Sbjct: 240 AAKSSSQLPIPSAIPRPASRMPLTSRSVP-PGRGALPPDSLST 281


>gi|14249168 proline/serine-rich coiled-coil 1 isoform a [Homo
           sapiens]
          Length = 333

 Score = 33.9 bits (76), Expect = 0.14
 Identities = 30/103 (29%), Positives = 44/103 (42%), Gaps = 5/103 (4%)

Query: 117 SHGPSHLRLAWTSQAGVSRLGPSWQSCSSCGSSSPAAQPSFGLPVQALRTAAAAAATAAA 176
           S  P+   L  ++     R GPS ++ +S     P    S   P  +   +        A
Sbjct: 184 SKSPASSPLTRSTPPVRGRAGPSGRAAAS----PPTPIRSVLAPQPSTSNSQRLPRPQGA 239

Query: 177 AARCQSRLLASLLLPRPGSPLPLLSLPSPQPARQSLTPHSHSS 219
           AA+  S+L     +PRP S +PL S   P P R +L P S S+
Sbjct: 240 AAKSSSQLPIPSAIPRPASRMPLTSRSVP-PGRGALPPDSLST 281


>gi|32698692 zinc finger, DHHC domain containing 8 [Homo sapiens]
          Length = 765

 Score = 33.9 bits (76), Expect = 0.14
 Identities = 38/151 (25%), Positives = 55/151 (36%), Gaps = 20/151 (13%)

Query: 6   GFSSARRPLARACWVKVEASQSRTSEGTASDRSSCSSSSVSKICLRPQKGSHRGKTAGSL 65
           GF  AR P  +     + +S SR    T+S       +S +    RP  GSHR      L
Sbjct: 615 GFGGARNPALQTSLSSLSSSVSRAPR-TSSSSLQADQASSNAPGPRPSSGSHRSPARQGL 673

Query: 66  RSLPPIPGPGTYRDRSLIHIFLLGADFSSRGDGQSDSSSISGGLRGDSSMLSHGPSHLRL 125
            S P  P   +Y     +             D      S++  ++ D   L   PS L  
Sbjct: 674 PSPPGTPHSPSYAGPKAVAFI--------HTDLPEPPPSLT--VQRDHPQLKTPPSKLN- 722

Query: 126 AWTSQAGVSRLGPSWQSCSSCGSSSPAAQPS 156
                 G++RLGP      + G   P+A P+
Sbjct: 723 --GQSPGLARLGP------ATGPPGPSASPT 745


>gi|226437579 NAC alpha domain containing [Homo sapiens]
          Length = 1562

 Score = 33.5 bits (75), Expect = 0.19
 Identities = 45/149 (30%), Positives = 55/149 (36%), Gaps = 35/149 (23%)

Query: 102 SSSISGGLRGDSSMLSHGPSHLRLAWTSQAGVSR---LGPSWQSCSSC----------GS 148
           +++I GG R +   L+ GPSHL L +      +R    G SW +              G 
Sbjct: 31  ATTILGGDRREPCALTPGPSHLALTFLPSKPGARPQPEGASWDAGPGGAPSAWADPGEGG 90

Query: 149 SSPAAQPSFGLPVQALRTAAAAAATAAAAARCQSRLLASLLLPR---------------P 193
            SP   P  GL  QAL T A   AT             +LL PR               P
Sbjct: 91  PSPMLLPE-GLSSQALSTEAPLPATLEPRIVMGEETCQALLSPRAARTALRDQEGGHASP 149

Query: 194 GSPLPL-----LSLPSPQPARQS-LTPHS 216
             P  L     LS+PSP P   S  TP S
Sbjct: 150 DPPPELCSQGDLSVPSPPPDPDSFFTPPS 178


>gi|4506943 short stature homeobox isoform SHOXa [Homo sapiens]
          Length = 292

 Score = 33.5 bits (75), Expect = 0.19
 Identities = 15/29 (51%), Positives = 21/29 (72%)

Query: 155 PSFGLPVQALRTAAAAAATAAAAARCQSR 183
           P FGLP+ +L  +A+AAA  AAAA+  S+
Sbjct: 244 PPFGLPIASLAESASAAAVVAAAAKSNSK 272


>gi|34365793 WNK lysine deficient protein kinase 4 [Homo sapiens]
          Length = 1243

 Score = 33.5 bits (75), Expect = 0.19
 Identities = 29/93 (31%), Positives = 39/93 (41%), Gaps = 12/93 (12%)

Query: 142 SCSSCGSSSPAAQPSFGLPVQALRTAAAAAATAAAAARCQSRLLASLLLPRPG------- 194
           +CS    SSP   P          TAA   + A+A +     +  SLL P PG       
Sbjct: 895 TCSQVTLSSPFFPPCPSTSSFPSTTAAPLLSLASAFSLAVMTVAQSLLSPSPGLLSQSPP 954

Query: 195 ---SPLPLLSLPSP--QPARQSLTPHSHSSPSQ 222
              SPLP L LP P     ++S +PH+    S+
Sbjct: 955 APPSPLPSLPLPPPVAPGGQESPSPHTAEVESE 987


>gi|239754540 PREDICTED: NAC alpha domain containing [Homo sapiens]
          Length = 1522

 Score = 33.5 bits (75), Expect = 0.19
 Identities = 45/149 (30%), Positives = 55/149 (36%), Gaps = 35/149 (23%)

Query: 102 SSSISGGLRGDSSMLSHGPSHLRLAWTSQAGVSR---LGPSWQSCSSC----------GS 148
           +++I GG R +   L+ GPSHL L +      +R    G SW +              G 
Sbjct: 31  ATTILGGDRREPCALTPGPSHLALTFLPSKPGARPQPEGASWDAGPGGAPSAWADPGEGG 90

Query: 149 SSPAAQPSFGLPVQALRTAAAAAATAAAAARCQSRLLASLLLPR---------------P 193
            SP   P  GL  QAL T A   AT             +LL PR               P
Sbjct: 91  PSPMLLPE-GLSSQALSTEAPLPATLEPRIVMGEETCQALLSPRAARTALRDQEGGHASP 149

Query: 194 GSPLPL-----LSLPSPQPARQS-LTPHS 216
             P  L     LS+PSP P   S  TP S
Sbjct: 150 DPPPELCSQGDLSVPSPPPDPDSFFTPPS 178


>gi|239749931 PREDICTED: FLJ43861 protein [Homo sapiens]
          Length = 642

 Score = 33.5 bits (75), Expect = 0.19
 Identities = 60/242 (24%), Positives = 93/242 (38%), Gaps = 36/242 (14%)

Query: 6   GFSSARRPLARACWVKVEASQSRTSEGTASDRSSCSSSSVSKICLRPQKGSHRGKTAGSL 65
           GFS     + R  +VKV   +  T+     + ++CS  S       P   SHR  ++ +L
Sbjct: 99  GFSQLTILIQRQTYVKVTRIRQGTAIRALGEFTNCSHFS-------PVSPSHRSHSSLAL 151

Query: 66  RSLPPIPGPGTYRDRSLIHIFLLGADFSSRGDGQSDSSSISGGLRGDSSMLSHGPSHLRL 125
            SL       ++   + +H    G+ FS         SS++         L    SH  L
Sbjct: 152 PSLR------SHFSSTALHS--CGSHFSPVSPSHRSHSSLA---------LPSHRSHSSL 194

Query: 126 AWTSQAGVSRLGPSWQSCSSCGSS----SPAAQPSFGLPVQALRTAAAAAATAAAAARCQ 181
           A  S     R   S  +  SCGS     SP+ +    L + +LR+  ++ A  +  +   
Sbjct: 195 ALPSL----RSHFSSTALHSCGSHFSPVSPSHRSHSSLALPSLRSHFSSTALPSCGSHFS 250

Query: 182 SRLLASLLLPRPGSPLPLLSLPSPQPARQSLTPHSHSSPSQ--RNDW--KPGAHTDRSAQ 237
               A+    RP    P L LP+   A Q    H++ SP+   R  W     A   R+  
Sbjct: 251 PVGSAAACEMRPDPRRPHLPLPNSPCAGQVDAAHTYLSPTHPARERWTLSAPASPQRALP 310

Query: 238 GR 239
           GR
Sbjct: 311 GR 312


>gi|239749105 PREDICTED: NAC alpha domain containing [Homo sapiens]
          Length = 1522

 Score = 33.5 bits (75), Expect = 0.19
 Identities = 45/149 (30%), Positives = 55/149 (36%), Gaps = 35/149 (23%)

Query: 102 SSSISGGLRGDSSMLSHGPSHLRLAWTSQAGVSR---LGPSWQSCSSC----------GS 148
           +++I GG R +   L+ GPSHL L +      +R    G SW +              G 
Sbjct: 31  ATTILGGDRREPCALTPGPSHLALTFLPSKPGARPQPEGASWDAGPGGAPSAWADPGEGG 90

Query: 149 SSPAAQPSFGLPVQALRTAAAAAATAAAAARCQSRLLASLLLPR---------------P 193
            SP   P  GL  QAL T A   AT             +LL PR               P
Sbjct: 91  PSPMLLPE-GLSSQALSTEAPLPATLEPRIVMGEETCQALLSPRAARTALRDQEGGHASP 149

Query: 194 GSPLPL-----LSLPSPQPARQS-LTPHS 216
             P  L     LS+PSP P   S  TP S
Sbjct: 150 DPPPELCSQGDLSVPSPPPDPDSFFTPPS 178


>gi|239743134 PREDICTED: NAC alpha domain containing [Homo sapiens]
          Length = 1562

 Score = 33.5 bits (75), Expect = 0.19
 Identities = 45/149 (30%), Positives = 55/149 (36%), Gaps = 35/149 (23%)

Query: 102 SSSISGGLRGDSSMLSHGPSHLRLAWTSQAGVSR---LGPSWQSCSSC----------GS 148
           +++I GG R +   L+ GPSHL L +      +R    G SW +              G 
Sbjct: 31  ATTILGGDRREPCALTPGPSHLALTFLPSKPGARPQPEGASWDAGPGGAPSAWADPGEGG 90

Query: 149 SSPAAQPSFGLPVQALRTAAAAAATAAAAARCQSRLLASLLLPR---------------P 193
            SP   P  GL  QAL T A   AT             +LL PR               P
Sbjct: 91  PSPMLLPE-GLSSQALSTEAPLPATLEPRIVMGEETCQALLSPRAARTALRDQEGGHASP 149

Query: 194 GSPLPL-----LSLPSPQPARQS-LTPHS 216
             P  L     LS+PSP P   S  TP S
Sbjct: 150 DPPPELCSQGDLSVPSPPPDPDSFFTPPS 178


>gi|239508792 PREDICTED: NAC alpha domain containing [Homo sapiens]
          Length = 1522

 Score = 33.5 bits (75), Expect = 0.19
 Identities = 45/149 (30%), Positives = 55/149 (36%), Gaps = 35/149 (23%)

Query: 102 SSSISGGLRGDSSMLSHGPSHLRLAWTSQAGVSR---LGPSWQSCSSC----------GS 148
           +++I GG R +   L+ GPSHL L +      +R    G SW +              G 
Sbjct: 31  ATTILGGDRREPCALTPGPSHLALTFLPSKPGARPQPEGASWDAGPGGAPSAWADPGEGG 90

Query: 149 SSPAAQPSFGLPVQALRTAAAAAATAAAAARCQSRLLASLLLPR---------------P 193
            SP   P  GL  QAL T A   AT             +LL PR               P
Sbjct: 91  PSPMLLPE-GLSSQALSTEAPLPATLEPRIVMGEETCQALLSPRAARTALRDQEGGHASP 149

Query: 194 GSPLPL-----LSLPSPQPARQS-LTPHS 216
             P  L     LS+PSP P   S  TP S
Sbjct: 150 DPPPELCSQGDLSVPSPPPDPDSFFTPPS 178


>gi|95147342 chromodomain helicase DNA binding protein 9 [Homo
            sapiens]
          Length = 2881

 Score = 33.5 bits (75), Expect = 0.19
 Identities = 30/91 (32%), Positives = 40/91 (43%), Gaps = 6/91 (6%)

Query: 66   RSLPPIPGPGTYRDRSLIHIFLLGADFSSRGDGQSDSSSISGGLRGDSSMLSHGPSHLRL 125
            R+ P  P P + + R    +   G++ SS  D  SDS   S   R  SS  S   SH R 
Sbjct: 2108 RTEPLTPNPASKKPR----VHKRGSESSS--DSDSDSERSSCSSRSSSSSSSSSCSHSRS 2161

Query: 126  AWTSQAGVSRLGPSWQSCSSCGSSSPAAQPS 156
              +S +  S    S  S SS  SSS ++  S
Sbjct: 2162 GSSSSSSSSCSSASSSSSSSTSSSSSSSSSS 2192


>gi|4885407 hyperpolarization activated cyclic nucleotide-gated
           potassium channel 4 [Homo sapiens]
          Length = 1203

 Score = 33.1 bits (74), Expect = 0.25
 Identities = 31/88 (35%), Positives = 39/88 (44%), Gaps = 10/88 (11%)

Query: 145 SCGSSSPAAQPSFGLP-VQALRTAAAAAATAAAAARCQSRLLASLLLPRPGSPLPLL--- 200
           +  S++P   P    P +QA   AAAA  + A A     RL A++  P PGS L  L   
Sbjct: 761 AAASATPTPTPVIWTPLIQAPLQAAAATTSVAIALTHHPRLPAAIFRPPPGSGLGNLGAG 820

Query: 201 SLPSPQPARQSLTPHS------HSSPSQ 222
             P      QSL P +       SSPSQ
Sbjct: 821 QTPRHLKRLQSLIPSALGSASPASSPSQ 848


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.315    0.126    0.387 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,755,618
Number of Sequences: 37866
Number of extensions: 630203
Number of successful extensions: 5691
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 58
Number of HSP's successfully gapped in prelim test: 261
Number of HSP's that attempted gapping in prelim test: 5018
Number of HSP's gapped (non-prelim): 728
length of query: 258
length of database: 18,247,518
effective HSP length: 100
effective length of query: 158
effective length of database: 14,460,918
effective search space: 2284825044
effective search space used: 2284825044
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 61 (28.1 bits)

Search results were obtained with NCBI BLAST and RefSeq entries.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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