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Search of human proteins with 239744568
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239744568 PREDICTED: similar to S-phase kinase-associated
protein 1A (p19A) [Homo sapiens]
(168 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239755758 PREDICTED: similar to S-phase kinase-associated pro... 351 2e-97
gi|239750260 PREDICTED: similar to S-phase kinase-associated pro... 351 2e-97
gi|239744568 PREDICTED: similar to S-phase kinase-associated pro... 351 2e-97
gi|25777713 S-phase kinase-associated protein 1 isoform b [Homo ... 296 7e-81
gi|25777711 S-phase kinase-associated protein 1 isoform a [Homo ... 281 2e-76
gi|239753827 PREDICTED: similar to S-phase kinase-associated pro... 206 6e-54
gi|239748390 PREDICTED: hypothetical protein XP_002346652 [Homo ... 206 6e-54
gi|239742318 PREDICTED: hypothetical protein XP_002342489 [Homo ... 206 6e-54
gi|5032161 elongin C [Homo sapiens] 38 0.005
gi|169213749 PREDICTED: similar to elongin C [Homo sapiens] 37 0.008
gi|169214183 PREDICTED: similar to elongin C [Homo sapiens] 37 0.008
gi|169213526 PREDICTED: similar to elongin C [Homo sapiens] 37 0.008
gi|239741256 PREDICTED: hypothetical protein XP_002342145 [Homo ... 33 0.088
gi|239752879 PREDICTED: similar to elongin C [Homo sapiens] 33 0.12
gi|239747430 PREDICTED: similar to elongin C [Homo sapiens] 33 0.12
gi|16507237 heat shock 70kDa protein 5 [Homo sapiens] 32 0.33
gi|46195719 olfactomedin-like 2B [Homo sapiens] 28 3.7
gi|156104874 envoplakin [Homo sapiens] 27 8.3
>gi|239755758 PREDICTED: similar to S-phase kinase-associated
protein 1A (p19A) [Homo sapiens]
Length = 168
Score = 351 bits (900), Expect = 2e-97
Identities = 168/168 (100%), Positives = 168/168 (100%)
Query: 1 MPSIKLQSSGGEIFEVDVEIVKQSVTIKTMLEDLGMNDEGDHDPVPLPNVNAAILKKVIQ 60
MPSIKLQSSGGEIFEVDVEIVKQSVTIKTMLEDLGMNDEGDHDPVPLPNVNAAILKKVIQ
Sbjct: 1 MPSIKLQSSGGEIFEVDVEIVKQSVTIKTMLEDLGMNDEGDHDPVPLPNVNAAILKKVIQ 60
Query: 61 WCTHHEDDSPPPKVYENKEKRTDDIPVWDQEFLKVDQGTLFELILAANYLDIKGLLDVTC 120
WCTHHEDDSPPPKVYENKEKRTDDIPVWDQEFLKVDQGTLFELILAANYLDIKGLLDVTC
Sbjct: 61 WCTHHEDDSPPPKVYENKEKRTDDIPVWDQEFLKVDQGTLFELILAANYLDIKGLLDVTC 120
Query: 121 KTVANMVNRKTPEEIHKTFNLKNDFTEEWEAQVHQENQQCEEKDCSKY 168
KTVANMVNRKTPEEIHKTFNLKNDFTEEWEAQVHQENQQCEEKDCSKY
Sbjct: 121 KTVANMVNRKTPEEIHKTFNLKNDFTEEWEAQVHQENQQCEEKDCSKY 168
>gi|239750260 PREDICTED: similar to S-phase kinase-associated
protein 1A (p19A) [Homo sapiens]
Length = 168
Score = 351 bits (900), Expect = 2e-97
Identities = 168/168 (100%), Positives = 168/168 (100%)
Query: 1 MPSIKLQSSGGEIFEVDVEIVKQSVTIKTMLEDLGMNDEGDHDPVPLPNVNAAILKKVIQ 60
MPSIKLQSSGGEIFEVDVEIVKQSVTIKTMLEDLGMNDEGDHDPVPLPNVNAAILKKVIQ
Sbjct: 1 MPSIKLQSSGGEIFEVDVEIVKQSVTIKTMLEDLGMNDEGDHDPVPLPNVNAAILKKVIQ 60
Query: 61 WCTHHEDDSPPPKVYENKEKRTDDIPVWDQEFLKVDQGTLFELILAANYLDIKGLLDVTC 120
WCTHHEDDSPPPKVYENKEKRTDDIPVWDQEFLKVDQGTLFELILAANYLDIKGLLDVTC
Sbjct: 61 WCTHHEDDSPPPKVYENKEKRTDDIPVWDQEFLKVDQGTLFELILAANYLDIKGLLDVTC 120
Query: 121 KTVANMVNRKTPEEIHKTFNLKNDFTEEWEAQVHQENQQCEEKDCSKY 168
KTVANMVNRKTPEEIHKTFNLKNDFTEEWEAQVHQENQQCEEKDCSKY
Sbjct: 121 KTVANMVNRKTPEEIHKTFNLKNDFTEEWEAQVHQENQQCEEKDCSKY 168
>gi|239744568 PREDICTED: similar to S-phase kinase-associated
protein 1A (p19A) [Homo sapiens]
Length = 168
Score = 351 bits (900), Expect = 2e-97
Identities = 168/168 (100%), Positives = 168/168 (100%)
Query: 1 MPSIKLQSSGGEIFEVDVEIVKQSVTIKTMLEDLGMNDEGDHDPVPLPNVNAAILKKVIQ 60
MPSIKLQSSGGEIFEVDVEIVKQSVTIKTMLEDLGMNDEGDHDPVPLPNVNAAILKKVIQ
Sbjct: 1 MPSIKLQSSGGEIFEVDVEIVKQSVTIKTMLEDLGMNDEGDHDPVPLPNVNAAILKKVIQ 60
Query: 61 WCTHHEDDSPPPKVYENKEKRTDDIPVWDQEFLKVDQGTLFELILAANYLDIKGLLDVTC 120
WCTHHEDDSPPPKVYENKEKRTDDIPVWDQEFLKVDQGTLFELILAANYLDIKGLLDVTC
Sbjct: 61 WCTHHEDDSPPPKVYENKEKRTDDIPVWDQEFLKVDQGTLFELILAANYLDIKGLLDVTC 120
Query: 121 KTVANMVNRKTPEEIHKTFNLKNDFTEEWEAQVHQENQQCEEKDCSKY 168
KTVANMVNRKTPEEIHKTFNLKNDFTEEWEAQVHQENQQCEEKDCSKY
Sbjct: 121 KTVANMVNRKTPEEIHKTFNLKNDFTEEWEAQVHQENQQCEEKDCSKY 168
>gi|25777713 S-phase kinase-associated protein 1 isoform b [Homo
sapiens]
Length = 163
Score = 296 bits (757), Expect = 7e-81
Identities = 145/163 (88%), Positives = 151/163 (92%)
Query: 1 MPSIKLQSSGGEIFEVDVEIVKQSVTIKTMLEDLGMNDEGDHDPVPLPNVNAAILKKVIQ 60
MPSIKLQSS GEIFEVDVEI KQSVTIKTMLEDLGM+DEGD DPVPLPNVNAAILKKVIQ
Sbjct: 1 MPSIKLQSSDGEIFEVDVEIAKQSVTIKTMLEDLGMDDEGDDDPVPLPNVNAAILKKVIQ 60
Query: 61 WCTHHEDDSPPPKVYENKEKRTDDIPVWDQEFLKVDQGTLFELILAANYLDIKGLLDVTC 120
WCTHH+DD PPP+ ENKEKRTDDIPVWDQEFLKVDQGTLFELILAANYLDIKGLLDVTC
Sbjct: 61 WCTHHKDDPPPPEDDENKEKRTDDIPVWDQEFLKVDQGTLFELILAANYLDIKGLLDVTC 120
Query: 121 KTVANMVNRKTPEEIHKTFNLKNDFTEEWEAQVHQENQQCEEK 163
KTVANM+ KTPEEI KTFN+KNDFTEE EAQV +ENQ CEEK
Sbjct: 121 KTVANMIKGKTPEEIRKTFNIKNDFTEEEEAQVRKENQWCEEK 163
>gi|25777711 S-phase kinase-associated protein 1 isoform a [Homo
sapiens]
Length = 160
Score = 281 bits (718), Expect = 2e-76
Identities = 138/153 (90%), Positives = 143/153 (93%)
Query: 1 MPSIKLQSSGGEIFEVDVEIVKQSVTIKTMLEDLGMNDEGDHDPVPLPNVNAAILKKVIQ 60
MPSIKLQSS GEIFEVDVEI KQSVTIKTMLEDLGM+DEGD DPVPLPNVNAAILKKVIQ
Sbjct: 1 MPSIKLQSSDGEIFEVDVEIAKQSVTIKTMLEDLGMDDEGDDDPVPLPNVNAAILKKVIQ 60
Query: 61 WCTHHEDDSPPPKVYENKEKRTDDIPVWDQEFLKVDQGTLFELILAANYLDIKGLLDVTC 120
WCTHH+DD PPP+ ENKEKRTDDIPVWDQEFLKVDQGTLFELILAANYLDIKGLLDVTC
Sbjct: 61 WCTHHKDDPPPPEDDENKEKRTDDIPVWDQEFLKVDQGTLFELILAANYLDIKGLLDVTC 120
Query: 121 KTVANMVNRKTPEEIHKTFNLKNDFTEEWEAQV 153
KTVANM+ KTPEEI KTFN+KNDFTEE EAQV
Sbjct: 121 KTVANMIKGKTPEEIRKTFNIKNDFTEEEEAQV 153
>gi|239753827 PREDICTED: similar to S-phase kinase-associated
protein 1A (p19A) [Homo sapiens]
Length = 202
Score = 206 bits (525), Expect = 6e-54
Identities = 111/170 (65%), Positives = 131/170 (77%), Gaps = 9/170 (5%)
Query: 1 MPSIKLQSSGGEIFEVDVEIVKQSVTIKTMLEDLGMNDEGDHDPVPLPNVNAAILKK--- 57
+PSIKL SS GE+FEVDVEI KQSVT+K MLE+LGM D+GD+DPVPLPNVNAAILK+
Sbjct: 33 IPSIKLLSSDGELFEVDVEIAKQSVTLKIMLENLGM-DDGDNDPVPLPNVNAAILKRSFR 91
Query: 58 ---VIQWCTHHEDDSPPP-KVYENKEKRTDDIPVWDQEFLKVDQGTLFELILAANYLDIK 113
+IQWCT+ +D+ PPP + EN+EKRTD IP WDQ+FLK+D GTLFE+ILAANYLDIK
Sbjct: 92 LGTIIQWCTNQKDNPPPPPEADENEEKRTDAIPAWDQKFLKIDPGTLFEVILAANYLDIK 151
Query: 114 GLLDVTCKTVANMVNRKTPEEI-HKTFNLKNDFTEEWEAQVHQENQQCEE 162
GLLDV CKTVA ++ K PEEI L T EAQ+ +ENQ CEE
Sbjct: 152 GLLDVPCKTVAYLIKGKAPEEICTNRLPLIPKLTLLEEAQIPKENQWCEE 201
>gi|239748390 PREDICTED: hypothetical protein XP_002346652 [Homo
sapiens]
Length = 202
Score = 206 bits (525), Expect = 6e-54
Identities = 111/170 (65%), Positives = 131/170 (77%), Gaps = 9/170 (5%)
Query: 1 MPSIKLQSSGGEIFEVDVEIVKQSVTIKTMLEDLGMNDEGDHDPVPLPNVNAAILKK--- 57
+PSIKL SS GE+FEVDVEI KQSVT+K MLE+LGM D+GD+DPVPLPNVNAAILK+
Sbjct: 33 IPSIKLLSSDGELFEVDVEIAKQSVTLKIMLENLGM-DDGDNDPVPLPNVNAAILKRSFR 91
Query: 58 ---VIQWCTHHEDDSPPP-KVYENKEKRTDDIPVWDQEFLKVDQGTLFELILAANYLDIK 113
+IQWCT+ +D+ PPP + EN+EKRTD IP WDQ+FLK+D GTLFE+ILAANYLDIK
Sbjct: 92 LGTIIQWCTNQKDNPPPPPEADENEEKRTDAIPAWDQKFLKIDPGTLFEVILAANYLDIK 151
Query: 114 GLLDVTCKTVANMVNRKTPEEI-HKTFNLKNDFTEEWEAQVHQENQQCEE 162
GLLDV CKTVA ++ K PEEI L T EAQ+ +ENQ CEE
Sbjct: 152 GLLDVPCKTVAYLIKGKAPEEICTNRLPLIPKLTLLEEAQIPKENQWCEE 201
>gi|239742318 PREDICTED: hypothetical protein XP_002342489 [Homo
sapiens]
Length = 202
Score = 206 bits (525), Expect = 6e-54
Identities = 111/170 (65%), Positives = 131/170 (77%), Gaps = 9/170 (5%)
Query: 1 MPSIKLQSSGGEIFEVDVEIVKQSVTIKTMLEDLGMNDEGDHDPVPLPNVNAAILKK--- 57
+PSIKL SS GE+FEVDVEI KQSVT+K MLE+LGM D+GD+DPVPLPNVNAAILK+
Sbjct: 33 IPSIKLLSSDGELFEVDVEIAKQSVTLKIMLENLGM-DDGDNDPVPLPNVNAAILKRSFR 91
Query: 58 ---VIQWCTHHEDDSPPP-KVYENKEKRTDDIPVWDQEFLKVDQGTLFELILAANYLDIK 113
+IQWCT+ +D+ PPP + EN+EKRTD IP WDQ+FLK+D GTLFE+ILAANYLDIK
Sbjct: 92 LGTIIQWCTNQKDNPPPPPEADENEEKRTDAIPAWDQKFLKIDPGTLFEVILAANYLDIK 151
Query: 114 GLLDVTCKTVANMVNRKTPEEI-HKTFNLKNDFTEEWEAQVHQENQQCEE 162
GLLDV CKTVA ++ K PEEI L T EAQ+ +ENQ CEE
Sbjct: 152 GLLDVPCKTVAYLIKGKAPEEICTNRLPLIPKLTLLEEAQIPKENQWCEE 201
>gi|5032161 elongin C [Homo sapiens]
Length = 112
Score = 37.7 bits (86), Expect = 0.005
Identities = 34/109 (31%), Positives = 48/109 (44%), Gaps = 17/109 (15%)
Query: 4 IKLQSSGGEIFEVDVEIVKQSVTIKTMLEDLGMNDEGDHDPVPLPNVNAAILKKVIQWCT 63
+KL SS G F V E S TIK ML G E + + V + + +L KV + T
Sbjct: 19 VKLISSDGHEFIVKREHALTSGTIKAMLSGPGQFAENETNEVNFREIPSHVLSKVCMYFT 78
Query: 64 HHEDDSPPPKV-YENKEKRTDDIPVWDQEFLKVDQGTLFELILAANYLD 111
+ KV Y N + P+ + L EL++AAN+LD
Sbjct: 79 Y--------KVRYTNSSTEIPEFPIAPEIAL--------ELLMAANFLD 111
>gi|169213749 PREDICTED: similar to elongin C [Homo sapiens]
Length = 115
Score = 37.0 bits (84), Expect = 0.008
Identities = 35/109 (32%), Positives = 46/109 (42%), Gaps = 14/109 (12%)
Query: 4 IKLQSSGGEIFEVDVEIVKQSVTIKTMLEDLGMNDEGDHDPVPLPNVNAAILKKVIQWCT 63
+KL S G F V E S TIK ML G E + D V + + +L KV C
Sbjct: 19 VKLILSDGHEFIVKKERALTSGTIKAMLSGPGQFAENEADEVHFREIPSHVLSKVYALCM 78
Query: 64 HHEDDSPPPKV-YENKEKRTDDIPVWDQEFLKVDQGTLFELILAANYLD 111
+ KV Y N + PV + L EL++AAN+LD
Sbjct: 79 YF-----MYKVRYANSSTEIPEFPVAPEIAL--------ELLMAANFLD 114
>gi|169214183 PREDICTED: similar to elongin C [Homo sapiens]
Length = 115
Score = 37.0 bits (84), Expect = 0.008
Identities = 35/109 (32%), Positives = 46/109 (42%), Gaps = 14/109 (12%)
Query: 4 IKLQSSGGEIFEVDVEIVKQSVTIKTMLEDLGMNDEGDHDPVPLPNVNAAILKKVIQWCT 63
+KL S G F V E S TIK ML G E + D V + + +L KV C
Sbjct: 19 VKLILSDGHEFIVKKERALTSGTIKAMLSGPGQFAENEADEVHFREIPSHVLSKVYALCM 78
Query: 64 HHEDDSPPPKV-YENKEKRTDDIPVWDQEFLKVDQGTLFELILAANYLD 111
+ KV Y N + PV + L EL++AAN+LD
Sbjct: 79 YF-----MYKVRYANSSTEIPEFPVAPEIAL--------ELLMAANFLD 114
>gi|169213526 PREDICTED: similar to elongin C [Homo sapiens]
Length = 115
Score = 37.0 bits (84), Expect = 0.008
Identities = 35/109 (32%), Positives = 46/109 (42%), Gaps = 14/109 (12%)
Query: 4 IKLQSSGGEIFEVDVEIVKQSVTIKTMLEDLGMNDEGDHDPVPLPNVNAAILKKVIQWCT 63
+KL S G F V E S TIK ML G E + D V + + +L KV C
Sbjct: 19 VKLILSDGHEFIVKKERALTSGTIKAMLSGPGQFAENEADEVHFREIPSHVLSKVYALCM 78
Query: 64 HHEDDSPPPKV-YENKEKRTDDIPVWDQEFLKVDQGTLFELILAANYLD 111
+ KV Y N + PV + L EL++AAN+LD
Sbjct: 79 YF-----MYKVRYANSSTEIPEFPVAPEIAL--------ELLMAANFLD 114
>gi|239741256 PREDICTED: hypothetical protein XP_002342145 [Homo
sapiens]
Length = 287
Score = 33.5 bits (75), Expect = 0.088
Identities = 20/62 (32%), Positives = 30/62 (48%)
Query: 4 IKLQSSGGEIFEVDVEIVKQSVTIKTMLEDLGMNDEGDHDPVPLPNVNAAILKKVIQWCT 63
+KL SS G V E S+TIK ML G E + V +++ +L KV + T
Sbjct: 194 VKLISSSGHKVIVKREYAVTSITIKAMLSGPGQLAENEISEVSFREISSHVLSKVCMYVT 253
Query: 64 HH 65
++
Sbjct: 254 YN 255
>gi|239752879 PREDICTED: similar to elongin C [Homo sapiens]
Length = 269
Score = 33.1 bits (74), Expect = 0.12
Identities = 20/61 (32%), Positives = 29/61 (47%)
Query: 4 IKLQSSGGEIFEVDVEIVKQSVTIKTMLEDLGMNDEGDHDPVPLPNVNAAILKKVIQWCT 63
+KL SS G V E S+TIK ML G E + V +++ +L KV + T
Sbjct: 176 VKLISSSGHKVIVKREYAVTSITIKAMLSGPGQLAENEISEVSFREISSHVLSKVCMYVT 235
Query: 64 H 64
+
Sbjct: 236 Y 236
>gi|239747430 PREDICTED: similar to elongin C [Homo sapiens]
Length = 269
Score = 33.1 bits (74), Expect = 0.12
Identities = 20/61 (32%), Positives = 29/61 (47%)
Query: 4 IKLQSSGGEIFEVDVEIVKQSVTIKTMLEDLGMNDEGDHDPVPLPNVNAAILKKVIQWCT 63
+KL SS G V E S+TIK ML G E + V +++ +L KV + T
Sbjct: 176 VKLISSSGHKVIVKREYAVTSITIKAMLSGPGQLAENEISEVSFREISSHVLSKVCMYVT 235
Query: 64 H 64
+
Sbjct: 236 Y 236
>gi|16507237 heat shock 70kDa protein 5 [Homo sapiens]
Length = 654
Score = 31.6 bits (70), Expect = 0.33
Identities = 18/49 (36%), Positives = 24/49 (48%), Gaps = 10/49 (20%)
Query: 110 LDIKGLLDVTCK----------TVANMVNRKTPEEIHKTFNLKNDFTEE 148
+D+ G+L VT + T+ N NR TPEEI + N F EE
Sbjct: 503 IDVNGILRVTAEDKGTGNKNKITITNDQNRLTPEEIERMVNDAEKFAEE 551
>gi|46195719 olfactomedin-like 2B [Homo sapiens]
Length = 750
Score = 28.1 bits (61), Expect = 3.7
Identities = 22/80 (27%), Positives = 41/80 (51%), Gaps = 5/80 (6%)
Query: 89 DQEFLKVDQGTLFELILAANY-LDIKGLLDVTCKTVANMVNRKTPEEIHKTFNLKNDFTE 147
D + LK+ T+ +++ A Y LD+ L VT K V + K EE+ K +N+ +
Sbjct: 141 DSQDLKLS--TIIDMLEGAFYGLDLLKLHSVTTKLVGRV--DKLEEEVSKNLTKENEQIK 196
Query: 148 EWEAQVHQENQQCEEKDCSK 167
E ++ E + +++CS+
Sbjct: 197 EDMEEIRTEMNKRGKENCSE 216
>gi|156104874 envoplakin [Homo sapiens]
Length = 2033
Score = 26.9 bits (58), Expect = 8.3
Identities = 12/39 (30%), Positives = 21/39 (53%)
Query: 2 PSIKLQSSGGEIFEVDVEIVKQSVTIKTMLEDLGMNDEG 40
P ++LQ EIF+VD E ++ +K L+++ G
Sbjct: 1188 PKVQLQERVHEIFQVDPETEQEITRLKAKLQEMAGKRSG 1226
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.314 0.133 0.397
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,152,465
Number of Sequences: 37866
Number of extensions: 326402
Number of successful extensions: 784
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 755
Number of HSP's gapped (non-prelim): 18
length of query: 168
length of database: 18,247,518
effective HSP length: 95
effective length of query: 73
effective length of database: 14,650,248
effective search space: 1069468104
effective search space used: 1069468104
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 58 (26.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.