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Search of human proteins with 116734702
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|116734702 homeobox D13 [Homo sapiens]
(343 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|116734702 homeobox D13 [Homo sapiens] 693 0.0
gi|24497554 homeobox A13 [Homo sapiens] 272 4e-73
gi|24497536 homeobox C13 [Homo sapiens] 264 8e-71
gi|62865866 homeobox B13 [Homo sapiens] 218 5e-57
gi|23510368 homeobox D11 [Homo sapiens] 96 5e-20
gi|194353946 homeobox D12 [Homo sapiens] 84 2e-16
gi|5031759 homeobox A11 [Homo sapiens] 80 3e-15
gi|7657166 homeobox C11 [Homo sapiens] 80 3e-15
gi|27804315 homeobox C12 [Homo sapiens] 79 5e-15
gi|194363768 homeobox D9 [Homo sapiens] 78 1e-14
gi|15029508 homeobox B9 [Homo sapiens] 75 9e-14
gi|182765442 homeobox A10 isoform a [Homo sapiens] 74 1e-13
gi|23510366 homeobox D10 [Homo sapiens] 73 3e-13
gi|24497547 homeobox C9 [Homo sapiens] 73 3e-13
gi|23097236 homeobox A9 [Homo sapiens] 73 4e-13
gi|24497533 homeobox C10 [Homo sapiens] 72 6e-13
gi|24497551 homeobox A10 isoform b [Homo sapiens] 72 9e-13
gi|4557673 pancreatic and duodenal homeobox 1 [Homo sapiens] 69 5e-12
gi|89257348 homeo box HB9 [Homo sapiens] 67 2e-11
gi|13273317 homeobox B8 [Homo sapiens] 64 3e-10
gi|12056969 homeobox C8 [Homo sapiens] 63 3e-10
gi|18959212 GS homeobox 2 [Homo sapiens] 63 3e-10
gi|91208415 mesenchyme homeobox 1 isoform 3 [Homo sapiens] 62 6e-10
gi|4758710 mesenchyme homeobox 1 isoform 1 [Homo sapiens] 62 6e-10
gi|10140847 homeobox A2 [Homo sapiens] 62 7e-10
gi|24497517 homeobox A5 [Homo sapiens] 62 7e-10
gi|33457326 GS homeobox 1 [Homo sapiens] 62 7e-10
gi|4504465 homeobox B2 [Homo sapiens] 62 7e-10
gi|4504469 homeobox B5 [Homo sapiens] 61 1e-09
gi|15029506 homeobox D8 [Homo sapiens] 61 2e-09
>gi|116734702 homeobox D13 [Homo sapiens]
Length = 343
Score = 693 bits (1789), Expect = 0.0
Identities = 343/343 (100%), Positives = 343/343 (100%)
Query: 1 MSRAGSWDMDGLRADGGGAGGAPASSSSSSVAAAAASGQCRGFLSAPVFAGTHSGRAAAA 60
MSRAGSWDMDGLRADGGGAGGAPASSSSSSVAAAAASGQCRGFLSAPVFAGTHSGRAAAA
Sbjct: 1 MSRAGSWDMDGLRADGGGAGGAPASSSSSSVAAAAASGQCRGFLSAPVFAGTHSGRAAAA 60
Query: 61 AAAAAAAAAAASGFAYPGTSERTGSSSSSSSSAVVAARPEAPPAKECPAPTPAAAAAAPP 120
AAAAAAAAAAASGFAYPGTSERTGSSSSSSSSAVVAARPEAPPAKECPAPTPAAAAAAPP
Sbjct: 61 AAAAAAAAAAASGFAYPGTSERTGSSSSSSSSAVVAARPEAPPAKECPAPTPAAAAAAPP 120
Query: 121 SAPALGYGYHFGNGYYSCRMSHGVGLQQNALKSSPHASLGGFPVEKYMDVSGLASSSVPA 180
SAPALGYGYHFGNGYYSCRMSHGVGLQQNALKSSPHASLGGFPVEKYMDVSGLASSSVPA
Sbjct: 121 SAPALGYGYHFGNGYYSCRMSHGVGLQQNALKSSPHASLGGFPVEKYMDVSGLASSSVPA 180
Query: 181 NEVPARAKEVSFYQGYTSPYQHVPGYIDMVSTFGSGEPRHEAYISMEGYQSWTLANGWNS 240
NEVPARAKEVSFYQGYTSPYQHVPGYIDMVSTFGSGEPRHEAYISMEGYQSWTLANGWNS
Sbjct: 181 NEVPARAKEVSFYQGYTSPYQHVPGYIDMVSTFGSGEPRHEAYISMEGYQSWTLANGWNS 240
Query: 241 QVYCTKDQPQGSHFWKSSFPGDVALNQPDMCVYRRGRKKRVPYTKLQLKELENEYAINKF 300
QVYCTKDQPQGSHFWKSSFPGDVALNQPDMCVYRRGRKKRVPYTKLQLKELENEYAINKF
Sbjct: 241 QVYCTKDQPQGSHFWKSSFPGDVALNQPDMCVYRRGRKKRVPYTKLQLKELENEYAINKF 300
Query: 301 INKDKRRRISAATNLSERQVTIWFQNRRVKDKKIVSKLKDTVS 343
INKDKRRRISAATNLSERQVTIWFQNRRVKDKKIVSKLKDTVS
Sbjct: 301 INKDKRRRISAATNLSERQVTIWFQNRRVKDKKIVSKLKDTVS 343
>gi|24497554 homeobox A13 [Homo sapiens]
Length = 388
Score = 272 bits (695), Expect = 4e-73
Identities = 178/357 (49%), Positives = 217/357 (60%), Gaps = 51/357 (14%)
Query: 14 ADGGG--------AGGAPASSSSSSVAAAAASGQCRGFLS--APVFAGTHS------GRA 57
A GGG AGG + +++++ AAAAA+ QCR ++ AP+ G S G A
Sbjct: 53 AGGGGFPHPAAAAAGGNFSVAAAAAAAAAAAANQCRNLMAHPAPLAPGAASAYSSAPGEA 112
Query: 58 AAAAAAAAAAAAAASGFAYPGTSERTGSSSSSSSSAVVAARPEAPPAKECPAPTPAAAAA 117
+AAAAAAAAAAA+ A +++SSS A A AK+C +P +AAA
Sbjct: 113 PPSAAAAAAAAAAAAAAA---------AAASSSGGPGPAGPAGAEAAKQC---SPCSAAA 160
Query: 118 APPSAPA-LGYGYHFGNGYYSCRMSHGVGLQQNALKSSPH---ASLGGFPVEKYMDVSGL 173
S PA L YGY FG+GYY C +G NA+KS A+ +KYMD +G
Sbjct: 161 QSSSGPAALPYGY-FGSGYYPCAR---MGPHPNAIKSCAQPASAAAAAAFADKYMDTAGP 216
Query: 174 ASSSVPANEVPARAKEVSFY-QGYTS-PYQH---VPGYIDMV---STFGSGEPRHEAY-I 224
A A E +RAKE +FY QGY + PY H +PGY+DM G GE RHE +
Sbjct: 217 A-----AEEFSSRAKEFAFYHQGYAAGPYHHHQPMPGYLDMPVVPGLGGPGESRHEPLGL 271
Query: 225 SMEGYQSWTLANGWNSQVYCTKDQPQGSHFWKSSFPGDVALNQPDMCVYRRGRKKRVPYT 284
ME YQ W L NGWN Q+YC K+Q Q H WKS+ P DV + D YRRGRKKRVPYT
Sbjct: 272 PMESYQPWALPNGWNGQMYCPKEQAQPPHLWKSTLP-DVVSHPSDASSYRRGRKKRVPYT 330
Query: 285 KLQLKELENEYAINKFINKDKRRRISAATNLSERQVTIWFQNRRVKDKKIVSKLKDT 341
K+QLKELE EYA NKFI KDKRRRISA TNLSERQVTIWFQNRRVK+KK+++KLK T
Sbjct: 331 KVQLKELEREYATNKFITKDKRRRISATTNLSERQVTIWFQNRRVKEKKVINKLKTT 387
>gi|24497536 homeobox C13 [Homo sapiens]
Length = 330
Score = 264 bits (675), Expect = 8e-71
Identities = 149/308 (48%), Positives = 182/308 (59%), Gaps = 37/308 (12%)
Query: 55 GRAAAAAAAAAAAAAAASGFAYPGTSERTGSSSSSSSSA--------VVAARPEAPPAK- 105
G A SG A PG + SS ++ V RP AP
Sbjct: 30 GGGGGGGGGTGGAGGGCSG-ASPGKAPSMDGLGSSCPASHCRDLLPHPVLGRPPAPLGAP 88
Query: 106 ------ECPAPTPAAAAAAPPSAPA-----LGYGYHFGNGYYSCRMSHGVGLQQNALKSS 154
+ PAP A A PP+ P LGYGY FG YY CR+SH V LQQ
Sbjct: 89 QGAVYTDIPAPEAARQCAPPPAPPTSSSATLGYGYPFGGSYYGCRLSHNVNLQQKPCAYH 148
Query: 155 PHASLGGFPVEKYMDVSGLASSSVPANEVPARAKEVSFYQGYTSPYQHVPGYIDMV---S 211
P +KY + SG ++P +++ +RAKE +FY + S YQ +PGY+D+
Sbjct: 149 PG--------DKYPEPSG----ALPGDDLSSRAKEFAFYPSFASSYQAMPGYLDVSVVPG 196
Query: 212 TFGSGEPRHEAYISMEGYQSWTLANGWNSQVYCTKDQPQGSHFWKSSFPGDVALNQPDMC 271
G EPRH+A I +EGYQ W L+NGW+SQVYC+K+Q Q +H WKS FP DV QP++
Sbjct: 197 ISGHPEPRHDALIPVEGYQHWALSNGWDSQVYCSKEQSQSAHLWKSPFP-DVVPLQPEVS 255
Query: 272 VYRRGRKKRVPYTKLQLKELENEYAINKFINKDKRRRISAATNLSERQVTIWFQNRRVKD 331
YRRGRKKRVPYTK+QLKELE EYA +KFI K+KRRRISA TNLSERQVTIWFQNRRVK+
Sbjct: 256 SYRRGRKKRVPYTKVQLKELEKEYAASKFITKEKRRRISATTNLSERQVTIWFQNRRVKE 315
Query: 332 KKIVSKLK 339
KK+VSK K
Sbjct: 316 KKVVSKSK 323
>gi|62865866 homeobox B13 [Homo sapiens]
Length = 284
Score = 218 bits (556), Expect = 5e-57
Identities = 115/247 (46%), Positives = 156/247 (63%), Gaps = 24/247 (9%)
Query: 101 APPAKECPAPTPAAAAAAPPSAPALGYGYHFGNGYYSCRMSHGVGLQQNALK-SSPHASL 159
A P K+C P P P+ GY FG GYYSCR+S +++LK + A+L
Sbjct: 57 AEPPKQCH-PCPGVPQGTSPAPVPYGY---FGGGYYSCRVS------RSSLKPCAQAATL 106
Query: 160 GGFPVEKYMDVSGLASSSVPANEVPARAKEVSFYQGYTSPYQHVPGYID--MVSTFGS-G 216
+P E + E P+R E +FY GY YQ + Y+D +V T G+ G
Sbjct: 107 AAYPAE----------TPTAGEEYPSRPTEFAFYPGYPGTYQPMASYLDVSVVQTLGAPG 156
Query: 217 EPRHEAYISMEGYQSWTLANGWNSQVYCTKDQPQGSHFWKSSFPGDVALNQPDMCVYRRG 276
EPRH++ + ++ YQSW LA GWNSQ+ C +Q FWK++F + PD C +RRG
Sbjct: 157 EPRHDSLLPVDSYQSWALAGGWNSQMCCQGEQNPPGPFWKAAFADSSGQHPPDACAFRRG 216
Query: 277 RKKRVPYTKLQLKELENEYAINKFINKDKRRRISAATNLSERQVTIWFQNRRVKDKKIVS 336
RKKR+PY+K QL+ELE EYA NKFI KDKRR+ISAAT+LSERQ+TIWFQNRRVK+KK+++
Sbjct: 217 RKKRIPYSKGQLRELEREYAANKFITKDKRRKISAATSLSERQITIWFQNRRVKEKKVLA 276
Query: 337 KLKDTVS 343
K+K++ +
Sbjct: 277 KVKNSAT 283
>gi|23510368 homeobox D11 [Homo sapiens]
Length = 338
Score = 95.9 bits (237), Expect = 5e-20
Identities = 102/337 (30%), Positives = 127/337 (37%), Gaps = 108/337 (32%)
Query: 17 GGAGGAPASSSSSSVAAAAASGQCRGFLSAPVFAGTHSGRAAAAAAAAAAAAAAASGFAY 76
GG GG A SS G G+ AP +A AAAAAAAAAAAA A+
Sbjct: 77 GGGGGGSAGGGSSGGGPGGGGGGAGGY--APYYA------AAAAAAAAAAAAEEAA---- 124
Query: 77 PGTSERTGSSSSSSSSAVVAARPEAPPAKECP-----APTPAAAAAAPPSAPALGYGYHF 131
R PPA P AP P AA PP PA
Sbjct: 125 -------------------MQRELLPPAGRRPDVLFKAPEPVCAAPGPPHGPAGA----- 160
Query: 132 GNGYYSCRMSHGV---GLQQ--NALKSSPHASLGGFPVEKYMDVSGLASSSVPANEVPAR 186
+ +YS +G+ G Q A P A G PA P
Sbjct: 161 ASNFYSAVGRNGILPQGFDQFYEAAPGPPFA--------------GPQPPPPPAPPQPEG 206
Query: 187 AKEVSFYQGYTSPYQHVPGYIDMVSTFGSGEPRHEAYISMEGYQSWTLANGWNSQVYCTK 246
A + G+PR A G CTK
Sbjct: 207 AAD-------------------------KGDPRTGA--------------GGGGGSPCTK 227
Query: 247 DQP--------QGSHFWKSSFPGDVALNQPDMCVY-RRGRKKRVPYTKLQLKELENEYAI 297
P +GS PG+ + V +R RKKR PYTK Q++ELE E+
Sbjct: 228 ATPGSEPKGAAEGSGGDGEGPPGEAGAEKSSSAVAPQRSRKKRCPYTKYQIRELEREFFF 287
Query: 298 NKFINKDKRRRISAATNLSERQVTIWFQNRRVKDKKI 334
N +INK+KR ++S NL++RQV IWFQNRR+K+KK+
Sbjct: 288 NVYINKEKRLQLSRMLNLTDRQVKIWFQNRRMKEKKL 324
>gi|194353946 homeobox D12 [Homo sapiens]
Length = 270
Score = 84.0 bits (206), Expect = 2e-16
Identities = 37/61 (60%), Positives = 49/61 (80%)
Query: 275 RGRKKRVPYTKLQLKELENEYAINKFINKDKRRRISAATNLSERQVTIWFQNRRVKDKKI 334
R RKKR PYTK Q+ ELENE+ +N+FIN+ KR+ +S NLS++QV IWFQNRR+K K++
Sbjct: 201 RARKKRKPYTKQQIAELENEFLVNEFINRQKRKELSNRLNLSDQQVKIWFQNRRMKKKRV 260
Query: 335 V 335
V
Sbjct: 261 V 261
>gi|5031759 homeobox A11 [Homo sapiens]
Length = 313
Score = 80.1 bits (196), Expect = 3e-15
Identities = 36/61 (59%), Positives = 49/61 (80%)
Query: 274 RRGRKKRVPYTKLQLKELENEYAINKFINKDKRRRISAATNLSERQVTIWFQNRRVKDKK 333
+R RKKR PYTK Q++ELE E+ + +INK+KR ++S NL++RQV IWFQNRR+K+KK
Sbjct: 239 QRTRKKRCPYTKYQIRELEREFFFSVYINKEKRLQLSRMLNLTDRQVKIWFQNRRMKEKK 298
Query: 334 I 334
I
Sbjct: 299 I 299
Score = 33.9 bits (76), Expect = 0.22
Identities = 27/94 (28%), Positives = 39/94 (41%), Gaps = 8/94 (8%)
Query: 15 DGGGAGGAPASSSSSSVAAAAASGQCRGFLSAPVFAGTHSGRAAAAAAAAAAAAAAASGF 74
D G PA++++S+ AAAAA+G AP + + SG AAAA
Sbjct: 162 DKSAEKGPPAATATSAAAAAAATG-------APATSSSDSG-GGGGCRETAAAAEEKERR 213
Query: 75 AYPGTSERTGSSSSSSSSAVVAARPEAPPAKECP 108
P +S SSS + + + K CP
Sbjct: 214 RRPESSSSPESSSGHTEDKAGGSSGQRTRKKRCP 247
Score = 28.5 bits (62), Expect = 9.1
Identities = 20/70 (28%), Positives = 27/70 (38%), Gaps = 7/70 (10%)
Query: 44 LSAPVFAGTHSGRAAAAAAAAAAAAAAASGFAYPGTSERTGSSSSSSSSAVVAA------ 97
L++ + G S AA A +AAAAA+ P TS AA
Sbjct: 154 LASSDYPGDKSAEKGPPAATATSAAAAAAATGAPATSSSDSGGGGGCRETAAAAEEKERR 213
Query: 98 -RPEAPPAKE 106
RPE+ + E
Sbjct: 214 RRPESSSSPE 223
>gi|7657166 homeobox C11 [Homo sapiens]
Length = 304
Score = 79.7 bits (195), Expect = 3e-15
Identities = 35/60 (58%), Positives = 48/60 (80%)
Query: 275 RGRKKRVPYTKLQLKELENEYAINKFINKDKRRRISAATNLSERQVTIWFQNRRVKDKKI 334
R RKKR PY+K Q++ELE E+ N +INK+KR ++S NL++RQV IWFQNRR+K+KK+
Sbjct: 231 RTRKKRCPYSKFQIRELEREFFFNVYINKEKRLQLSRMLNLTDRQVKIWFQNRRMKEKKL 290
>gi|27804315 homeobox C12 [Homo sapiens]
Length = 282
Score = 79.3 bits (194), Expect = 5e-15
Identities = 35/61 (57%), Positives = 48/61 (78%)
Query: 275 RGRKKRVPYTKLQLKELENEYAINKFINKDKRRRISAATNLSERQVTIWFQNRRVKDKKI 334
R RKKR PY+KLQL ELE E+ +N+FI + +RR +S NLS++QV IWFQNRR+K K++
Sbjct: 213 RSRKKRKPYSKLQLAELEGEFLVNEFITRQRRRELSDRLNLSDQQVKIWFQNRRMKKKRL 272
Query: 335 V 335
+
Sbjct: 273 L 273
>gi|194363768 homeobox D9 [Homo sapiens]
Length = 352
Score = 78.2 bits (191), Expect = 1e-14
Identities = 84/330 (25%), Positives = 126/330 (38%), Gaps = 39/330 (11%)
Query: 16 GGGAGGAPASSSSSSVAAAAASGQCRGFLSAPVFAGTHSGRAAAAAAAAAAAAAAASGFA 75
G GA G PA + A AA C + VF+ + S A + AAAA SG
Sbjct: 42 GPGAQGRPAGVADGPAATAAEFASCSFAPRSAVFSASWS-----AVPSQPPAAAAMSGLY 96
Query: 76 YPGTSERTGSSSSSSSSAVVAARPEAPPAKECPAPT--------PAAAAAAPPSAPALGY 127
+P ++S+S V + E P A P + PS PA G
Sbjct: 97 HPYVPPPPLAASASEPGRYVRSWMEPLPGFPGGAGGGGGGGGGGPGRGPSPGPSGPANGR 156
Query: 128 GYHFGNGYYSCRMSHGVGLQQNALKSSPHASLGGFPVEKYMDVSGLASSSVPANEVPARA 187
Y G+ + A + A+ + +S+S+ ++
Sbjct: 157 HY-------------GIKPETRAAPAPATAA----------STTSSSSTSLSSSSKRTEC 193
Query: 188 KEVSFYQGYTSPYQHVPGYID---MVSTFGSGEPRHEAYISMEGYQSWTLANGWNSQVYC 244
QG + P ++ +T G+G + G S A + C
Sbjct: 194 SVARESQGSSGPEFSCNSFLQEKAAAATGGTGPGAGIGAATGTGGSSEPSACSDHPIPGC 253
Query: 245 TKDQPQGSHFWKSSFPGDVALNQPDMCVYRRGRKKRVPYTKLQLKELENEYAINKFINKD 304
+ + + H D + R RKKR PYTK Q ELE E+ N ++ +D
Sbjct: 254 SLKEEEKQHSQPQQQQLDPNNPAANWIHARSTRKKRCPYTKYQTLELEKEFLFNMYLTRD 313
Query: 305 KRRRISAATNLSERQVTIWFQNRRVKDKKI 334
+R ++ NL+ERQV IWFQNRR+K KK+
Sbjct: 314 RRYEVARILNLTERQVKIWFQNRRMKMKKM 343
Score = 33.1 bits (74), Expect = 0.37
Identities = 35/127 (27%), Positives = 44/127 (34%), Gaps = 21/127 (16%)
Query: 11 GLRADGGGAGGAPASSSSSSVAAAAASGQCRGFLSAPVFAGTHSGRAAAAAAAAAAAAAA 70
G GGG GG P S + A G H G AA A A AA
Sbjct: 129 GAGGGGGGGGGGPGRGPSPGPSGPA--------------NGRHYGIKPETRAAPAPATAA 174
Query: 71 ASGFAYPGTSERTGSSSSSSSSAVVAARPEAPPAKECPAPT---PAAAAAAPPSAPALGY 127
++ +S + SSSS + VA + E + AAAA + P G
Sbjct: 175 ST----TSSSSTSLSSSSKRTECSVARESQGSSGPEFSCNSFLQEKAAAATGGTGPGAGI 230
Query: 128 GYHFGNG 134
G G G
Sbjct: 231 GAATGTG 237
>gi|15029508 homeobox B9 [Homo sapiens]
Length = 250
Score = 75.1 bits (183), Expect = 9e-14
Identities = 34/61 (55%), Positives = 43/61 (70%)
Query: 274 RRGRKKRVPYTKLQLKELENEYAINKFINKDKRRRISAATNLSERQVTIWFQNRRVKDKK 333
R RKKR PYTK Q ELE E+ N ++ +D+R ++ NLSERQV IWFQNRR+K KK
Sbjct: 183 RSSRKKRCPYTKYQTLELEKEFLFNMYLTRDRRHEVARLLNLSERQVKIWFQNRRMKMKK 242
Query: 334 I 334
+
Sbjct: 243 M 243
>gi|182765442 homeobox A10 isoform a [Homo sapiens]
Length = 410
Score = 74.3 bits (181), Expect = 1e-13
Identities = 74/247 (29%), Positives = 103/247 (41%), Gaps = 35/247 (14%)
Query: 89 SSSSAVVAARPEAPPAKECPAPTPAAAAAAPPSAPALGYGYHFGNGYYSCRMSHGVGLQQ 148
S+++A +A P PP C T + P L Y GY S G G QQ
Sbjct: 182 SATAAELAPFPRGPPPDGCALGTSSGVPV--PGYFRLSQAYGTAKGYGS----GGGGAQQ 235
Query: 149 NALKSSPHASLG-GFPVEKYMDVSGLASSSVPANEVPARAKEVSFYQGYTSPYQHVPGYI 207
P G GF + LAS S A AR + + SP P
Sbjct: 236 LGAGPFPAQPPGRGFDLPP-----ALASGSADA----ARKE-----RALDSP----PPPT 277
Query: 208 DMVSTFGSGEPRHEAYISMEGYQSWTLANGWNSQVYCTKDQPQGSHFWKSSFPGDVALNQ 267
+ G + EA+ S + + A +S+ KD S N
Sbjct: 278 LACGSGGGSQGDEEAHASSSAAEELSPAPSESSKASPEKD----------SLGNSKGENA 327
Query: 268 PDMCVYRRGRKKRVPYTKLQLKELENEYAINKFINKDKRRRISAATNLSERQVTIWFQNR 327
+ + GRKKR PYTK Q ELE E+ N ++ +++R IS + +L++RQV IWFQNR
Sbjct: 328 ANWLTAKSGRKKRCPYTKHQTLELEKEFLFNMYLTRERRLEISRSVHLTDRQVKIWFQNR 387
Query: 328 RVKDKKI 334
R+K KK+
Sbjct: 388 RMKLKKM 394
>gi|23510366 homeobox D10 [Homo sapiens]
Length = 340
Score = 73.2 bits (178), Expect = 3e-13
Identities = 33/61 (54%), Positives = 45/61 (73%)
Query: 274 RRGRKKRVPYTKLQLKELENEYAINKFINKDKRRRISAATNLSERQVTIWFQNRRVKDKK 333
+ GRKKR PYTK Q ELE E+ N ++ +++R IS + NL++RQV IWFQNRR+K KK
Sbjct: 264 KSGRKKRCPYTKHQTLELEKEFLFNMYLTRERRLEISKSVNLTDRQVKIWFQNRRMKLKK 323
Query: 334 I 334
+
Sbjct: 324 M 324
>gi|24497547 homeobox C9 [Homo sapiens]
Length = 260
Score = 73.2 bits (178), Expect = 3e-13
Identities = 34/67 (50%), Positives = 45/67 (67%)
Query: 274 RRGRKKRVPYTKLQLKELENEYAINKFINKDKRRRISAATNLSERQVTIWFQNRRVKDKK 333
R RKKR PYTK Q ELE E+ N ++ +D+R ++ NL+ERQV IWFQNRR+K KK
Sbjct: 190 RSTRKKRCPYTKYQTLELEKEFLFNMYLTRDRRYEVARVLNLTERQVKIWFQNRRMKMKK 249
Query: 334 IVSKLKD 340
+ + D
Sbjct: 250 MNKEKTD 256
>gi|23097236 homeobox A9 [Homo sapiens]
Length = 272
Score = 72.8 bits (177), Expect = 4e-13
Identities = 34/61 (55%), Positives = 43/61 (70%)
Query: 274 RRGRKKRVPYTKLQLKELENEYAINKFINKDKRRRISAATNLSERQVTIWFQNRRVKDKK 333
R RKKR PYTK Q ELE E+ N ++ +D+R ++ NL+ERQV IWFQNRR+K KK
Sbjct: 204 RSTRKKRCPYTKHQTLELEKEFLFNMYLTRDRRYEVARLLNLTERQVKIWFQNRRMKMKK 263
Query: 334 I 334
I
Sbjct: 264 I 264
>gi|24497533 homeobox C10 [Homo sapiens]
Length = 342
Score = 72.4 bits (176), Expect = 6e-13
Identities = 33/61 (54%), Positives = 44/61 (72%)
Query: 274 RRGRKKRVPYTKLQLKELENEYAINKFINKDKRRRISAATNLSERQVTIWFQNRRVKDKK 333
+ GRKKR PYTK Q ELE E+ N ++ +++R IS NL++RQV IWFQNRR+K KK
Sbjct: 266 KSGRKKRCPYTKHQTLELEKEFLFNMYLTRERRLEISKTINLTDRQVKIWFQNRRMKLKK 325
Query: 334 I 334
+
Sbjct: 326 M 326
>gi|24497551 homeobox A10 isoform b [Homo sapiens]
Length = 94
Score = 71.6 bits (174), Expect = 9e-13
Identities = 33/69 (47%), Positives = 47/69 (68%)
Query: 266 NQPDMCVYRRGRKKRVPYTKLQLKELENEYAINKFINKDKRRRISAATNLSERQVTIWFQ 325
N + + GRKKR PYTK Q ELE E+ N ++ +++R IS + +L++RQV IWFQ
Sbjct: 10 NAANWLTAKSGRKKRCPYTKHQTLELEKEFLFNMYLTRERRLEISRSVHLTDRQVKIWFQ 69
Query: 326 NRRVKDKKI 334
NRR+K KK+
Sbjct: 70 NRRMKLKKM 78
>gi|4557673 pancreatic and duodenal homeobox 1 [Homo sapiens]
Length = 283
Score = 69.3 bits (168), Expect = 5e-12
Identities = 32/82 (39%), Positives = 49/82 (59%), Gaps = 5/82 (6%)
Query: 252 SHFWKSSFPGDVALNQPDMCVYRRGRKKRVPYTKLQLKELENEYAINKFINKDKRRRISA 311
+H WK + G +P+ ++ R YT+ QL ELE E+ NK+I++ +R ++
Sbjct: 127 AHAWKGQWAGGAYAAEPE-----ENKRTRTAYTRAQLLELEKEFLFNKYISRPRRVELAV 181
Query: 312 ATNLSERQVTIWFQNRRVKDKK 333
NL+ER + IWFQNRR+K KK
Sbjct: 182 MLNLTERHIKIWFQNRRMKWKK 203
>gi|89257348 homeo box HB9 [Homo sapiens]
Length = 401
Score = 67.0 bits (162), Expect = 2e-11
Identities = 87/328 (26%), Positives = 121/328 (36%), Gaps = 81/328 (24%)
Query: 16 GGGAGGAPASSSSSSVAAAAASGQCRGFLSAPVFAGTHSGRAAAAAAAAAAAAAAA---- 71
GGG GG AS +S G C S P A RA + + AA A
Sbjct: 42 GGGGGGGGASGGTS--------GSCSPASSEPPAAPADRLRAESPSPPRLLAAHCALLPK 93
Query: 72 SGFAYPGTSERTGSSSSSSSSAVVAARPEAPPAKECPAPTPAAAAAAPPSAPALGYGYHF 131
GF G G + A P A A AAAAAA +A L G H
Sbjct: 94 PGFL--GAGGGGGGTGGGHGGPHHHAHPGAAAA--------AAAAAAAAAAGGLALGLHP 143
Query: 132 GNGYYSCRMSHGVGLQQNALKSSPHASLGGFPVEKYMDVSGLASSSVPANEVPARAKEVS 191
G G GL A +L G PV Y S A+++ A + PA +
Sbjct: 144 GGA------QGGAGLPAQA-------ALYGHPVYGY---SAAAAAAALAGQHPALSYSYP 187
Query: 192 FYQGYTSPYQHVPGYIDMVSTFGSGEPRHEAYISMEGYQSWTLANGWNSQVYCTKDQPQG 251
QG P H A G ++ L
Sbjct: 188 QVQG--------------------AHPAHPADPIKLGAGTFQL----------------- 210
Query: 252 SHFWKSSFPGDVALNQPDMCVYRRG------RKKRVPYTKLQLKELENEYAINKFINKDK 305
+ ++S G + PD + R+ R +T QL ELE+++ +NK++++ K
Sbjct: 211 DQWLRASTAGMILPKMPDFNSQAQSNLLGKCRRPRTAFTSQQLLELEHQFKLNKYLSRPK 270
Query: 306 RRRISAATNLSERQVTIWFQNRRVKDKK 333
R ++ + L+E QV IWFQNRR+K K+
Sbjct: 271 RFEVATSLMLTETQVKIWFQNRRMKWKR 298
Score = 34.3 bits (77), Expect = 0.17
Identities = 28/90 (31%), Positives = 40/90 (44%), Gaps = 23/90 (25%)
Query: 11 GLRADGGGAGGA---------PASSSSSSVAAAAAS----------GQCRGFLSAPVFAG 51
G GGG GG P ++++++ AAAAA+ G +G P A
Sbjct: 98 GAGGGGGGTGGGHGGPHHHAHPGAAAAAAAAAAAAAAGGLALGLHPGGAQGGAGLPAQAA 157
Query: 52 THS----GRAAAAAAAAAAAAAAASGFAYP 77
+ G +AAAAAAA A A ++YP
Sbjct: 158 LYGHPVYGYSAAAAAAALAGQHPALSYSYP 187
>gi|13273317 homeobox B8 [Homo sapiens]
Length = 243
Score = 63.5 bits (153), Expect = 3e-10
Identities = 66/229 (28%), Positives = 98/229 (42%), Gaps = 42/229 (18%)
Query: 130 HFGNGYYSCRMSHGVGLQQNALKSSPHASLGGFPVEKYMDVSGLASSSVPANEVPARAKE 189
+F N +S + G L+ N LGG P Y SG + + P++ +E
Sbjct: 4 YFVNSLFS-KYKTGESLRPNYYDCGFAQDLGGRPTVVYGPSSG------GSFQHPSQIQE 56
Query: 190 VSFYQG----YTSPYQHVP-------------GY--IDMVSTFGSGEPRHEAYISMEGYQ 230
FY G T+PYQ P GY + S FG+ +P Y +
Sbjct: 57 --FYHGPSSLSTAPYQQNPCAVACHGDPGNFYGYDPLQRQSLFGAQDPDLVQYADCK--- 111
Query: 231 SWTLANGWNSQVYCTKDQPQGSHFWKSSFPGDVALNQPDMCVYRRGRKKRVPYTKLQLKE 290
A+G + ++ P + + P A RRGR+ Y++ Q E
Sbjct: 112 -LAAASGLGEEAEGSEQSPSPTQLFPWMRPQAAAGR-------RRGRQT---YSRYQTLE 160
Query: 291 LENEYAINKFINKDKRRRISAATNLSERQVTIWFQNRRVKDKKIVSKLK 339
LE E+ N ++ + +R +S A L+ERQV IWFQNRR+K KK +K K
Sbjct: 161 LEKEFLFNPYLTRKRRIEVSHALGLTERQVKIWFQNRRMKWKKENNKDK 209
>gi|12056969 homeobox C8 [Homo sapiens]
Length = 242
Score = 63.2 bits (152), Expect = 3e-10
Identities = 66/214 (30%), Positives = 99/214 (46%), Gaps = 33/214 (15%)
Query: 135 YYSCRMSHGVGLQQNALKSSPHASLGGFP-----VEKYMD--VSGLASSSVPANEVPARA 187
YY CR VG + +AL P S GF V+ + SG+++S N
Sbjct: 23 YYDCRFPQSVG-RSHALVYGPGGSAPGFQHASHHVQDFFHHGTSGISNSGYQQNPCSLSC 81
Query: 188 K-EVSFYQGYTSPYQHVPGYIDMVSTFGSGEPRHEAYISMEGYQSWTLANGWNSQVYCTK 246
+ S + GY + + S +G+ + EA S+ Y + NS
Sbjct: 82 HGDASKFYGYEA--------LPRQSLYGA---QQEA--SVVQYPDCKSSANTNSS----- 123
Query: 247 DQPQGSHFWKSSFPGDVALNQPDMCVYRRGRKK-RVPYTKLQLKELENEYAINKFINKDK 305
+ QG H ++S P +L P M + GR+ R Y++ Q ELE E+ N ++ + +
Sbjct: 124 -EGQG-HLNQNSSP---SLMFPWMRPHAPGRRSGRQTYSRYQTLELEKEFLFNPYLTRKR 178
Query: 306 RRRISAATNLSERQVTIWFQNRRVKDKKIVSKLK 339
R +S A L+ERQV IWFQNRR+K KK +K K
Sbjct: 179 RIEVSHALGLTERQVKIWFQNRRMKWKKENNKDK 212
>gi|18959212 GS homeobox 2 [Homo sapiens]
Length = 304
Score = 63.2 bits (152), Expect = 3e-10
Identities = 29/58 (50%), Positives = 41/58 (70%)
Query: 276 GRKKRVPYTKLQLKELENEYAINKFINKDKRRRISAATNLSERQVTIWFQNRRVKDKK 333
G++ R +T QL ELE E++ N ++++ +R I+ NLSE+QV IWFQNRRVK KK
Sbjct: 202 GKRMRTAFTSTQLLELEREFSSNMYLSRLRRIEIATYLNLSEKQVKIWFQNRRVKHKK 259
Score = 30.4 bits (67), Expect = 2.4
Identities = 31/85 (36%), Positives = 34/85 (40%), Gaps = 26/85 (30%)
Query: 14 ADGGGAGGAPASSSSSSVAAAAASGQC--RGFLSAPVFAG-------------------- 51
A GGAG + S VA AA + F SAP A
Sbjct: 78 AGSGGAGAGVTGAGGSGVAGAAGALPLLKSQFSSAPGDAQFCPRVNHAHHHHHPPQHHHH 137
Query: 52 ----THSGRAAAAAAAAAAAAAAAS 72
G AAAAAAAAAAAAAAA+
Sbjct: 138 HHQPQQPGSAAAAAAAAAAAAAAAA 162
Score = 30.4 bits (67), Expect = 2.4
Identities = 15/21 (71%), Positives = 18/21 (85%)
Query: 57 AAAAAAAAAAAAAAASGFAYP 77
+AAAAAAAAAAAAAA+ +P
Sbjct: 146 SAAAAAAAAAAAAAAAALGHP 166
>gi|91208415 mesenchyme homeobox 1 isoform 3 [Homo sapiens]
Length = 139
Score = 62.4 bits (150), Expect = 6e-10
Identities = 28/60 (46%), Positives = 44/60 (73%)
Query: 275 RGRKKRVPYTKLQLKELENEYAINKFINKDKRRRISAATNLSERQVTIWFQNRRVKDKKI 334
+ RK+R +TK QL+ELE E+A + ++ + +R I+ +LSERQV +WFQNRR+K K++
Sbjct: 55 KARKERTAFTKEQLRELEAEFAHHNYLTRLRRYEIAVNLDLSERQVKVWFQNRRMKWKRV 114
>gi|4758710 mesenchyme homeobox 1 isoform 1 [Homo sapiens]
Length = 254
Score = 62.4 bits (150), Expect = 6e-10
Identities = 28/60 (46%), Positives = 44/60 (73%)
Query: 275 RGRKKRVPYTKLQLKELENEYAINKFINKDKRRRISAATNLSERQVTIWFQNRRVKDKKI 334
+ RK+R +TK QL+ELE E+A + ++ + +R I+ +LSERQV +WFQNRR+K K++
Sbjct: 170 KARKERTAFTKEQLRELEAEFAHHNYLTRLRRYEIAVNLDLSERQVKVWFQNRRMKWKRV 229
>gi|10140847 homeobox A2 [Homo sapiens]
Length = 376
Score = 62.0 bits (149), Expect = 7e-10
Identities = 28/57 (49%), Positives = 40/57 (70%)
Query: 277 RKKRVPYTKLQLKELENEYAINKFINKDKRRRISAATNLSERQVTIWFQNRRVKDKK 333
R+ R YT QL ELE E+ NK++ + +R I+A +L+ERQV +WFQNRR+K K+
Sbjct: 144 RRLRTAYTNTQLLELEKEFHFNKYLCRPRRVEIAALLDLTERQVKVWFQNRRMKHKR 200
>gi|24497517 homeobox A5 [Homo sapiens]
Length = 270
Score = 62.0 bits (149), Expect = 7e-10
Identities = 69/285 (24%), Positives = 104/285 (36%), Gaps = 71/285 (24%)
Query: 50 AGTHSGRAAAAAAAAAAAAAAASGFAYPGTSERTGSSSSSSSSAVVAARPEAPPAK-ECP 108
A HSGR + SG + G+ ER S ++S+S+A R P P
Sbjct: 38 ASMHSGRYGYGYNGMDLSVGR-SGSGHFGSGERARSYAASASAAPAEPRYSQPATSTHSP 96
Query: 109 APTPAAAAAAPPSAPALGYGYHFGNGYYSCRMSHGVGLQQNALKSSPHASLGGFPVEKYM 168
P P +A PS G H G +N+L +S AS
Sbjct: 97 QPDPLPCSAVAPSP---GSDSHHGG--------------KNSLSNSSGASADAGSTH-IS 138
Query: 169 DVSGLASSSVPANEVPARAKEVSFYQGYTSPYQHVPGYIDMVSTFGSGEPRHEAYISMEG 228
G+ ++S + PA +++ S EP +
Sbjct: 139 SREGVGTASGAEEDAPASSEQAS----------------------AQSEPSPAPPAQPQI 176
Query: 229 YQSWTLANGWNSQVYCTKDQPQGSHFWKSSFPGDVALNQPDMCVYRRGRKKRVPYTKLQL 288
Y W +++ + D G G++ R YT+ Q
Sbjct: 177 YP-------WMRKLHISHDNIGGPE----------------------GKRARTAYTRYQT 207
Query: 289 KELENEYAINKFINKDKRRRISAATNLSERQVTIWFQNRRVKDKK 333
ELE E+ N+++ + +R I+ A LSERQ+ IWFQNRR+K KK
Sbjct: 208 LELEKEFHFNRYLTRRRRIEIAHALCLSERQIKIWFQNRRMKWKK 252
>gi|33457326 GS homeobox 1 [Homo sapiens]
Length = 264
Score = 62.0 bits (149), Expect = 7e-10
Identities = 29/57 (50%), Positives = 40/57 (70%)
Query: 277 RKKRVPYTKLQLKELENEYAINKFINKDKRRRISAATNLSERQVTIWFQNRRVKDKK 333
++ R +T QL ELE E+A N ++++ +R I+ NLSE+QV IWFQNRRVK KK
Sbjct: 148 KRMRTAFTSTQLLELEREFASNMYLSRLRRIEIATYLNLSEKQVKIWFQNRRVKHKK 204
>gi|4504465 homeobox B2 [Homo sapiens]
Length = 356
Score = 62.0 bits (149), Expect = 7e-10
Identities = 28/57 (49%), Positives = 40/57 (70%)
Query: 277 RKKRVPYTKLQLKELENEYAINKFINKDKRRRISAATNLSERQVTIWFQNRRVKDKK 333
R+ R YT QL ELE E+ NK++ + +R I+A +L+ERQV +WFQNRR+K K+
Sbjct: 144 RRLRTAYTNTQLLELEKEFHFNKYLCRPRRVEIAALLDLTERQVKVWFQNRRMKHKR 200
>gi|4504469 homeobox B5 [Homo sapiens]
Length = 269
Score = 61.2 bits (147), Expect = 1e-09
Identities = 28/58 (48%), Positives = 40/58 (68%)
Query: 276 GRKKRVPYTKLQLKELENEYAINKFINKDKRRRISAATNLSERQVTIWFQNRRVKDKK 333
G++ R YT+ Q ELE E+ N+++ + +R I+ A LSERQ+ IWFQNRR+K KK
Sbjct: 194 GKRARTAYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLSERQIKIWFQNRRMKWKK 251
>gi|15029506 homeobox D8 [Homo sapiens]
Length = 290
Score = 60.8 bits (146), Expect = 2e-09
Identities = 81/299 (27%), Positives = 117/299 (39%), Gaps = 52/299 (17%)
Query: 53 HSGRAAAAAAAAAAAAAAASGFAYPGTSERTGSSSSSSSSAV------VAARPEAPP-AK 105
+S AAAAAAAAA A + + G +++++A+ A P APP A
Sbjct: 10 YSKYKAAAAAAAAAGEAINPTYYDCHFAPEVGGRHAAAAAALQLYGNSAAGFPHAPPQAH 69
Query: 106 ECPAPTPAAAAAAPPSAPALGYGYHFGNGYYSCRMSHGVGLQQNALKSSPHASLGGFPVE 165
P P+P PPS G G Y+ Q A PH P
Sbjct: 70 AHPHPSP------PPSGTGCGGREGRGQEYFHPGGGSPAAAYQAAPPPPPHPP----PPP 119
Query: 166 KYMDVSGLASSSVPANEVPARAKEVSFYQGYTSPYQHVPGYIDMVSTFGSGEPRHEAYIS 225
G+A PA FY GY ++ R + +
Sbjct: 120 PPPPCGGIACHGEPAK----------FY-----------GYDNL--------QRQPIFTT 150
Query: 226 MEGYQSWTLANGWNSQVYCTKDQPQGSHFWKSSFPGDV-ALNQPDMCVYRRGRKKRVPYT 284
+ + + +S +D H +SS P + +P RR + R Y+
Sbjct: 151 QQEAELVQYPDCKSSSGNIGEDP---DHLNQSSSPSQMFPWMRPQAAPGRR--RGRQTYS 205
Query: 285 KLQLKELENEYAINKFINKDKRRRISAATNLSERQVTIWFQNRRVKDKKIVSKLKDTVS 343
+ Q ELE E+ N ++ + +R +S A L+ERQV IWFQNRR+K KK +K K VS
Sbjct: 206 RFQTLELEKEFLFNPYLTRKRRIEVSHALALTERQVKIWFQNRRMKWKKENNKDKFPVS 264
Score = 38.5 bits (88), Expect = 0.009
Identities = 39/129 (30%), Positives = 45/129 (34%), Gaps = 28/129 (21%)
Query: 29 SSVAAAAASGQCRGFLSAPVFAGTH-----SGRAAAAAAAAAAAAAAASGF--------A 75
S AAAA+ G P + H GR AAAAAA +A+GF A
Sbjct: 11 SKYKAAAAAAAAAGEAINPTYYDCHFAPEVGGRHAAAAAALQLYGNSAAGFPHAPPQAHA 70
Query: 76 YP---------GTSERTGSSSS------SSSSAVVAARPEAPPAKECPAPTPAAAAAAPP 120
+P G R G S +A A P PP P P P A
Sbjct: 71 HPHPSPPPSGTGCGGREGRGQEYFHPGGGSPAAAYQAAPPPPPHPPPPPPPPPCGGIACH 130
Query: 121 SAPALGYGY 129
PA YGY
Sbjct: 131 GEPAKFYGY 139
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.312 0.126 0.374
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,538,990
Number of Sequences: 37866
Number of extensions: 763674
Number of successful extensions: 15988
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 634
Number of HSP's successfully gapped in prelim test: 605
Number of HSP's that attempted gapping in prelim test: 7951
Number of HSP's gapped (non-prelim): 4995
length of query: 343
length of database: 18,247,518
effective HSP length: 103
effective length of query: 240
effective length of database: 14,347,320
effective search space: 3443356800
effective search space used: 3443356800
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 62 (28.5 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.