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Search of human proteins with 116517332
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|116517332 STG protein [Homo sapiens]
(325 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|116517332 STG protein [Homo sapiens] 705 0.0
gi|83776598 virus-induced signaling adapter [Homo sapiens] 48 1e-05
gi|148491080 trinucleotide repeat containing 6B isoform 2 [Homo ... 47 2e-05
gi|241982729 trinucleotide repeat containing 6B isoform 1 [Homo ... 47 2e-05
gi|21389357 MAPK-interacting and spindle-stabilizing protein [Ho... 47 3e-05
gi|18105032 type X collagen alpha 1 precursor [Homo sapiens] 45 9e-05
gi|40068464 AT rich interactive domain 1B (SWI1-like) isoform 2 ... 42 6e-04
gi|40068466 AT rich interactive domain 1B (SWI1-like) isoform 1 ... 42 6e-04
gi|40068462 AT rich interactive domain 1B (SWI1-like) isoform 3 ... 42 6e-04
gi|21361376 splicing factor 3a, subunit 2 [Homo sapiens] 42 0.001
gi|192807323 SWI/SNF-related matrix-associated actin-dependent r... 41 0.002
gi|192807320 SWI/SNF-related matrix-associated actin-dependent r... 41 0.002
gi|192807318 SWI/SNF-related matrix-associated actin-dependent r... 41 0.002
gi|192807316 SWI/SNF-related matrix-associated actin-dependent r... 41 0.002
gi|192807314 SWI/SNF-related matrix-associated actin-dependent r... 41 0.002
gi|192807312 SWI/SNF-related matrix-associated actin-dependent r... 41 0.002
gi|21071056 SWI/SNF-related matrix-associated actin-dependent re... 41 0.002
gi|154355000 KH-type splicing regulatory protein [Homo sapiens] 40 0.003
gi|118572613 splicing coactivator subunit SRm300 [Homo sapiens] 39 0.008
gi|122056628 prion protein preproprotein [Homo sapiens] 38 0.011
gi|122056625 prion protein preproprotein [Homo sapiens] 38 0.011
gi|122056623 prion protein preproprotein [Homo sapiens] 38 0.011
gi|34335270 prion protein preproprotein [Homo sapiens] 38 0.011
gi|4506113 prion protein preproprotein [Homo sapiens] 38 0.011
gi|116805348 trinucleotide repeat containing 6A [Homo sapiens] 38 0.011
gi|79750944 ubiquitin specific peptidase 42 [Homo sapiens] 37 0.018
gi|117320535 proline-rich protein 3 isoform a [Homo sapiens] 37 0.018
gi|110618248 mucin and cadherin-like isoform 1 [Homo sapiens] 37 0.018
gi|4502951 collagen type III alpha 1 preproprotein [Homo sapiens] 37 0.031
gi|84570137 homeobox B3 [Homo sapiens] 37 0.031
>gi|116517332 STG protein [Homo sapiens]
Length = 325
Score = 705 bits (1819), Expect = 0.0
Identities = 325/325 (100%), Positives = 325/325 (100%)
Query: 1 MQGRVAGSCAPLGLLLVCLHLPGLFARSIGVVEEKVSQNLGTNLPQLGQPSSTGPSNSEH 60
MQGRVAGSCAPLGLLLVCLHLPGLFARSIGVVEEKVSQNLGTNLPQLGQPSSTGPSNSEH
Sbjct: 1 MQGRVAGSCAPLGLLLVCLHLPGLFARSIGVVEEKVSQNLGTNLPQLGQPSSTGPSNSEH 60
Query: 61 PQPALDPRSNDLARVPLKLSVPASDGFPPAGGSAVQRWPPSWGLPAMDSWPPEDPWQMMA 120
PQPALDPRSNDLARVPLKLSVPASDGFPPAGGSAVQRWPPSWGLPAMDSWPPEDPWQMMA
Sbjct: 61 PQPALDPRSNDLARVPLKLSVPASDGFPPAGGSAVQRWPPSWGLPAMDSWPPEDPWQMMA 120
Query: 121 AAAEDRLGEALPEELSYLSSAAALAPGSGPLPGESSPDATGLSPKASLLHQDSESRRLPR 180
AAAEDRLGEALPEELSYLSSAAALAPGSGPLPGESSPDATGLSPKASLLHQDSESRRLPR
Sbjct: 121 AAAEDRLGEALPEELSYLSSAAALAPGSGPLPGESSPDATGLSPKASLLHQDSESRRLPR 180
Query: 181 SNSLGAGGKILSQRPPWSLIHRVLPDHPWGTLNPSVSWGGGGPGTGWGTRPMPHPEGIWG 240
SNSLGAGGKILSQRPPWSLIHRVLPDHPWGTLNPSVSWGGGGPGTGWGTRPMPHPEGIWG
Sbjct: 181 SNSLGAGGKILSQRPPWSLIHRVLPDHPWGTLNPSVSWGGGGPGTGWGTRPMPHPEGIWG 240
Query: 241 INNQPPGTSWGNINRYPGGSWGNINRYPGGSWGNINRYPGGSWGNIHLYPGINNPFPPGV 300
INNQPPGTSWGNINRYPGGSWGNINRYPGGSWGNINRYPGGSWGNIHLYPGINNPFPPGV
Sbjct: 241 INNQPPGTSWGNINRYPGGSWGNINRYPGGSWGNINRYPGGSWGNIHLYPGINNPFPPGV 300
Query: 301 LRPPGSSWNIPAGFPNPPSPRLQWG 325
LRPPGSSWNIPAGFPNPPSPRLQWG
Sbjct: 301 LRPPGSSWNIPAGFPNPPSPRLQWG 325
>gi|83776598 virus-induced signaling adapter [Homo sapiens]
Length = 540
Score = 47.8 bits (112), Expect = 1e-05
Identities = 54/209 (25%), Positives = 77/209 (36%), Gaps = 37/209 (17%)
Query: 2 QGRVAGSCAPLGLLLVCLHLPGLFARSIGVVEEKVSQNLGTNLPQLGQP-----SSTGPS 56
Q R+ +C G HL R G VE ++ G L L S P
Sbjct: 39 QDRLRATCTLSGNRDTLWHLFNTLQRRPGWVEYFIAALRGCELVDLADEVASVYQSYQPR 98
Query: 57 NSEHPQPALDPRSNDLARVPLKLSVPASDGFPPAGGSA-------VQRWPPSWGLPAMDS 109
S+ P L+P S +PA PP +A + PS+ +P ++
Sbjct: 99 TSDRPPDPLEPPS-----------LPAERPGPPTPAAAHSIPYNSCREKEPSYPMPVQET 147
Query: 110 WPPEDPWQMMAAAAEDRLGEALPEELSYLSSAAALAPGSGPLPGESSPDATGLSPKASLL 169
PE P + A + A+P P GPL ESS D LSP S
Sbjct: 148 QAPESPGENSEQALQTLSPRAIPRN-----------PDGGPL--ESSSDLAALSPLTSSG 194
Query: 170 HQDSESRRLPRSNSLGAGGKILSQRPPWS 198
HQ+ ++ L +++ GA + R P S
Sbjct: 195 HQEQDT-ELGSTHTAGATSSLTPSRGPVS 222
>gi|148491080 trinucleotide repeat containing 6B isoform 2 [Homo
sapiens]
Length = 1723
Score = 47.0 bits (110), Expect = 2e-05
Identities = 43/170 (25%), Positives = 57/170 (33%), Gaps = 34/170 (20%)
Query: 181 SNSLGAGGKILSQRPPWSLIHRVLPDHPWGT-LNPSVSWGGGGPGTGWGTRPMPHPEGIW 239
+NS GG ++ P S D WG P+ W G GWG W
Sbjct: 704 NNSSNWGGGRPDEKTPSSWNENPSKDQGWGGGRQPNQGWSSGK--NGWGEEVDQTKNSNW 761
Query: 240 GINNQPPGTSWGNINRYPGGSW---GNINRYPGGSWGNINRYPG--------GSWGNIHL 288
+ P + WG + G+W GN + G W + R P SW H
Sbjct: 762 ESSASKPVSGWGEGGQNEIGTWGNGGNASLASKGGWEDCKRSPAWNETGRQPNSWNKQHQ 821
Query: 289 YP-----------------GINNPFPPGVLRPPGSSWNIPAGFPNPPSPR 321
G P PPG +RP SSW + P P +P+
Sbjct: 822 QQQPPQQPPPPQPEASGSWGGPPPPPPGNVRPSNSSW---SSGPQPATPK 868
Score = 29.6 bits (65), Expect = 3.8
Identities = 32/110 (29%), Positives = 42/110 (38%), Gaps = 13/110 (11%)
Query: 214 PSVSWGGGGPGT--GWGTRPMPHPEGIWGINNQPPGTSWGNINRYPGGSW--GNINRYPG 269
PS S G G+ WG P G ++ Q + GN + SW ++ + G
Sbjct: 410 PSQSTGDRKTGSVGSWGAAR--GPSGTDTVSGQSNSGNNGNNGKEREDSWKGASVQKSTG 467
Query: 270 G---SWGNINRYPGGSWGNIHLYPGINNPFPPGVLRPPGSS---WNIPAG 313
SW N NR GGSW N +N + G G S W P G
Sbjct: 468 SKNDSWDNNNRSTGGSW-NFGPQDSNDNKWGEGNKMTSGVSQGEWKQPTG 516
>gi|241982729 trinucleotide repeat containing 6B isoform 1 [Homo
sapiens]
Length = 1833
Score = 47.0 bits (110), Expect = 2e-05
Identities = 43/170 (25%), Positives = 57/170 (33%), Gaps = 34/170 (20%)
Query: 181 SNSLGAGGKILSQRPPWSLIHRVLPDHPWGT-LNPSVSWGGGGPGTGWGTRPMPHPEGIW 239
+NS GG ++ P S D WG P+ W G GWG W
Sbjct: 704 NNSSNWGGGRPDEKTPSSWNENPSKDQGWGGGRQPNQGWSSGK--NGWGEEVDQTKNSNW 761
Query: 240 GINNQPPGTSWGNINRYPGGSW---GNINRYPGGSWGNINRYPG--------GSWGNIHL 288
+ P + WG + G+W GN + G W + R P SW H
Sbjct: 762 ESSASKPVSGWGEGGQNEIGTWGNGGNASLASKGGWEDCKRSPAWNETGRQPNSWNKQHQ 821
Query: 289 YP-----------------GINNPFPPGVLRPPGSSWNIPAGFPNPPSPR 321
G P PPG +RP SSW + P P +P+
Sbjct: 822 QQQPPQQPPPPQPEASGSWGGPPPPPPGNVRPSNSSW---SSGPQPATPK 868
Score = 29.6 bits (65), Expect = 3.8
Identities = 32/110 (29%), Positives = 42/110 (38%), Gaps = 13/110 (11%)
Query: 214 PSVSWGGGGPGT--GWGTRPMPHPEGIWGINNQPPGTSWGNINRYPGGSW--GNINRYPG 269
PS S G G+ WG P G ++ Q + GN + SW ++ + G
Sbjct: 410 PSQSTGDRKTGSVGSWGAAR--GPSGTDTVSGQSNSGNNGNNGKEREDSWKGASVQKSTG 467
Query: 270 G---SWGNINRYPGGSWGNIHLYPGINNPFPPGVLRPPGSS---WNIPAG 313
SW N NR GGSW N +N + G G S W P G
Sbjct: 468 SKNDSWDNNNRSTGGSW-NFGPQDSNDNKWGEGNKMTSGVSQGEWKQPTG 516
>gi|21389357 MAPK-interacting and spindle-stabilizing protein [Homo
sapiens]
Length = 245
Score = 46.6 bits (109), Expect = 3e-05
Identities = 66/253 (26%), Positives = 92/253 (36%), Gaps = 51/253 (20%)
Query: 89 PAGGSAVQRWPPSWGLPAMDSWPPEDPWQMMAAAAEDRLG---EALPEELSYLSSAAALA 145
PA SAV P G P WP +PW +A + G A P + + + +
Sbjct: 16 PAKTSAVSNTKP--GQPPQ-GWPGSNPWNNPSAPSSVPSGLPPSATPSTVPFGPAPTGMY 72
Query: 146 PG---SGPLPGESSPDATGLSPKASLLHQDSESRRLPRSNSLGAGGKILSQRPPWSLIHR 202
P +GP PG +P P P G G + P+ + R
Sbjct: 73 PSVPPTGPPPGPPAP----FPPSGPSCPPPGGPYPAPTVPGPGPTGPYPTPNMPFPELPR 128
Query: 203 VL----------PDHPWGTLNPSVSWGGGGPGTG--WGTRPMPHPEGIWGINNQPPGTSW 250
P PWG S+S G PG G + T MP+P G PP
Sbjct: 129 PYGAPTDPAAAGPLGPWG----SMSSGPWAPGMGGQYPTPNMPYPSP--GPYPAPPPP-- 180
Query: 251 GNINRYPGGSWGNINRYPGGSWGNINRYPGGSWGNIHLYPGINNPFP-PGVLRPPGSSWN 309
+ PG + P WG + P G+WG YP +P PG+ P + +
Sbjct: 181 ----QAPGAA-------PPVPWGTV---PPGAWGPPAPYPAPTGSYPTPGLYPTPSNPFQ 226
Query: 310 IPAGFPN--PPSP 320
+P+G P+ PP P
Sbjct: 227 VPSG-PSGAPPMP 238
>gi|18105032 type X collagen alpha 1 precursor [Homo sapiens]
Length = 680
Score = 45.1 bits (105), Expect = 9e-05
Identities = 74/284 (26%), Positives = 95/284 (33%), Gaps = 40/284 (14%)
Query: 47 LGQPSSTGPSNSEHPQPALDPRSNDLARVPLKLSVPASDGFPPAGGSAVQRWPPSWGLPA 106
+G P GP P+ P + A P + +P + G P A G A PP +G P
Sbjct: 246 IGPPGPQGPPGERGPEGIGKPGA---AGAPGQPGIPGTKGLPGAPGIAGPPGPPGFGKPG 302
Query: 107 MDSWPPEDPWQMMAAAAEDRLGEALPEELSYLSSAAALAPGSGPLPGESSPDATGL---- 162
+ E + + GE P L GP + P + GL
Sbjct: 303 LPGLKGERGPAGLPGGPGAK-GEQGPAGLPGKPGLTGPPGNMGPQGPKGIPGSHGLPGPK 361
Query: 163 ---SPKASLLHQDSESRRLPRSNSLGAGGKILSQRPPWSLIHRVLPDHPWGTLNPSVSWG 219
P + ++ R S G+ GK P D P G NP +
Sbjct: 362 GETGPAGPAGYPGAKGER----GSPGSDGKPGYPGKPGL-------DGPKG--NPGLPGP 408
Query: 220 GGGPGTGWGTRPMPHPEGIWGINNQPPGTSWGNINRYPG--GSWGNINRYPGGSWGNINR 277
G PG G G +P P G G P PG G+ G I PG I
Sbjct: 409 KGDPGVG-GPPGLPGPVGPAGAKGMPGHNGEAGPRGAPGIPGTRGPIGP-PG-----IPG 461
Query: 278 YPGGSWGNIHLYPGINNPFPPGVLRPPGSSWNIPAGFPNPPSPR 321
+PG PG +P PPG N P G P PP PR
Sbjct: 462 FPGSKGD-----PG--SPGPPGPAGIATKGLNGPTGPPGPPGPR 498
>gi|40068464 AT rich interactive domain 1B (SWI1-like) isoform 2
[Homo sapiens]
Length = 2191
Score = 42.4 bits (98), Expect = 6e-04
Identities = 71/283 (25%), Positives = 105/283 (37%), Gaps = 30/283 (10%)
Query: 21 LPGLFARSIGVVEEKVSQNLGTNLPQLGQPSSTGPSNSEHPQPALDPRSNDLARVPLKLS 80
LP L + SI + L + + G SS G ++ P S L+ +P S
Sbjct: 620 LPDL-SGSIDDLPTGTEATLSSAVSASGSTSSQGDQSNPAQSPFSPHASPHLSSIPGGPS 678
Query: 81 VPASDGFPPAGGSAVQRWPPSWGLPAMDSWPPEDPWQMMAAAAEDRLGEA-LPEELSYLS 139
P+ G P G + + P S PP+ P +++ L ++ +P+E +++
Sbjct: 679 -PSPVG-SPVGSNQSRSGPISPASIPGSQMPPQPPGSQSESSSHPALSQSPMPQERGFMA 736
Query: 140 SAAALAPGSGPLPGESSPDATG--LSPKAS---LLHQDSESRRLPRSNSLGAGGKILSQR 194
P + P TG +SP S +H S +SNS G G +SQ
Sbjct: 737 GTQR-----NPQMAQYGPQQTGPSMSPHPSPGGQMHAGISS--FQQSNSSGTYGPQMSQY 789
Query: 195 PPWSLIHRVLPDHPWGTLNPSVSWGGGGPGTGWGTRPMPHPEGIWGINNQPPGTSWGNIN 254
P R P + PS S+ G GPG G H +G +QP G +
Sbjct: 790 GPQGNYSRP----PAYSGVPSASYSGPGPGMGISANNQMHGQG----PSQPCGAV--PLG 839
Query: 255 RYPGGSWGNINRYPGGSWGNINRYPGGSWGNIHLYPGINNPFP 297
R P N +PG PG S PG+ P P
Sbjct: 840 RMPSAGMQN-RPFPGNMSSMTPSSPGMSQQG---GPGMGPPMP 878
Score = 37.4 bits (85), Expect = 0.018
Identities = 49/195 (25%), Positives = 66/195 (33%), Gaps = 39/195 (20%)
Query: 45 PQLGQPSSTGPSNS------EHPQPALDPRSNDLARVPLKLSVPASDGFPPAGGSAVQRW 98
P + QP G +S + P P L + D P K+ PA + G A+
Sbjct: 94 PDMEQPQHGGAKDSAAGGQADPPGPPLLSKPGDEDDAPPKMGEPAGGRYEHPGLGALGTQ 153
Query: 99 PPSWGLPAMDSWPPEDPWQMMAAAAEDRLGEALPEELSYLSSAAALAPGSGPLPGESSPD 158
P +P P A+PE +Y SAA + G G G
Sbjct: 154 QPPVAVPGGGGGP-----------------AAVPEFNNYYGSAAPASGGPGGRAGPCFDQ 196
Query: 159 ATG-LSPKASLLHQDSESRRLPRSNSLGAGGKILSQRPPWSLIHRVLP----DHPWGTLN 213
G SP ++H S + + GA G + P H P +H G
Sbjct: 197 HGGQQSPGMGMMHSASAA-------AAGAPGSM----DPLQNSHEGYPNSQCNHYPGYSR 245
Query: 214 PSVSWGGGGPGTGWG 228
P GGGG G G G
Sbjct: 246 PGAGGGGGGGGGGGG 260
Score = 34.3 bits (77), Expect = 0.16
Identities = 55/208 (26%), Positives = 80/208 (38%), Gaps = 31/208 (14%)
Query: 45 PQLGQPSSTGPSNSEHPQPALDPRSNDLARVP--LKLSVPASDGF----PPAGG--SAVQ 96
P+L PS + + PQ SN +A VP LK PAS P GG S +
Sbjct: 1118 PKLQPPSPANSGSLQGPQTPQSTGSNSMAEVPGDLKPPTPASTPHGQMTPMQGGRSSTIS 1177
Query: 97 RWPP-----SWGLPAMDSWPPEDPWQMMAAAAEDRLGEALPEELSYLSSAAALAP--GSG 149
P P +S P P+Q G ++P+ + + P G
Sbjct: 1178 VHDPFSDVSDSSFPKRNSMTPNAPYQQ---------GMSMPDVMGRMPYEPNKDPFGGMR 1228
Query: 150 PLPGESSPDAT-GLSPKASLLHQDSESRRLPRSNSLGAGGKILSQRPPWSLIHRVLPDHP 208
+PG S P T G P +S+ ++S SN LG G + Q+ P+ + P
Sbjct: 1229 KVPGSSEPFMTQGQMPNSSMQDMYNQSPSGAMSN-LGMGQR---QQFPYGASYD-RRHEP 1283
Query: 209 WGTLNPSVSWGGGGPGTGWGTRPMPHPE 236
+G P G P G G +P +P+
Sbjct: 1284 YGQQYPGQGPPSGQPPYG-GHQPGLYPQ 1310
Score = 33.5 bits (75), Expect = 0.26
Identities = 36/150 (24%), Positives = 57/150 (38%), Gaps = 26/150 (17%)
Query: 45 PQLGQ--PSSTGPSNSEHPQP--------ALDPRSNDLARVPLKLS----------VPAS 84
PQ+ Q P TGPS S HP P + +SN ++S PA
Sbjct: 742 PQMAQYGPQQTGPSMSPHPSPGGQMHAGISSFQQSNSSGTYGPQMSQYGPQGNYSRPPAY 801
Query: 85 DGFPPAGGSAVQRWPPSWGLPAMDSWPPEDPWQMMAAAAEDRLGEALPEELSYLSSAAAL 144
G P A S P G+ A + + P Q A R+ A + + + +++
Sbjct: 802 SGVPSASYSGP---GPGMGISANNQMHGQGPSQPCGAVPLGRMPSAGMQNRPFPGNMSSM 858
Query: 145 APGSGPLPGESSPDATGLSPKASLLHQDSE 174
P S PG S G+ P +++ ++
Sbjct: 859 TPSS---PGMSQQGGPGMGPPMPTVNRKAQ 885
>gi|40068466 AT rich interactive domain 1B (SWI1-like) isoform 1
[Homo sapiens]
Length = 2231
Score = 42.4 bits (98), Expect = 6e-04
Identities = 71/283 (25%), Positives = 105/283 (37%), Gaps = 30/283 (10%)
Query: 21 LPGLFARSIGVVEEKVSQNLGTNLPQLGQPSSTGPSNSEHPQPALDPRSNDLARVPLKLS 80
LP L + SI + L + + G SS G ++ P S L+ +P S
Sbjct: 607 LPDL-SGSIDDLPTGTEATLSSAVSASGSTSSQGDQSNPAQSPFSPHASPHLSSIPGGPS 665
Query: 81 VPASDGFPPAGGSAVQRWPPSWGLPAMDSWPPEDPWQMMAAAAEDRLGEA-LPEELSYLS 139
P+ G P G + + P S PP+ P +++ L ++ +P+E +++
Sbjct: 666 -PSPVG-SPVGSNQSRSGPISPASIPGSQMPPQPPGSQSESSSHPALSQSPMPQERGFMA 723
Query: 140 SAAALAPGSGPLPGESSPDATG--LSPKAS---LLHQDSESRRLPRSNSLGAGGKILSQR 194
P + P TG +SP S +H S +SNS G G +SQ
Sbjct: 724 GTQR-----NPQMAQYGPQQTGPSMSPHPSPGGQMHAGISS--FQQSNSSGTYGPQMSQY 776
Query: 195 PPWSLIHRVLPDHPWGTLNPSVSWGGGGPGTGWGTRPMPHPEGIWGINNQPPGTSWGNIN 254
P R P + PS S+ G GPG G H +G +QP G +
Sbjct: 777 GPQGNYSRP----PAYSGVPSASYSGPGPGMGISANNQMHGQG----PSQPCGAV--PLG 826
Query: 255 RYPGGSWGNINRYPGGSWGNINRYPGGSWGNIHLYPGINNPFP 297
R P N +PG PG S PG+ P P
Sbjct: 827 RMPSAGMQN-RPFPGNMSSMTPSSPGMSQQG---GPGMGPPMP 865
Score = 37.4 bits (85), Expect = 0.018
Identities = 49/195 (25%), Positives = 66/195 (33%), Gaps = 39/195 (20%)
Query: 45 PQLGQPSSTGPSNS------EHPQPALDPRSNDLARVPLKLSVPASDGFPPAGGSAVQRW 98
P + QP G +S + P P L + D P K+ PA + G A+
Sbjct: 94 PDMEQPQHGGAKDSAAGGQADPPGPPLLSKPGDEDDAPPKMGEPAGGRYEHPGLGALGTQ 153
Query: 99 PPSWGLPAMDSWPPEDPWQMMAAAAEDRLGEALPEELSYLSSAAALAPGSGPLPGESSPD 158
P +P P A+PE +Y SAA + G G G
Sbjct: 154 QPPVAVPGGGGGP-----------------AAVPEFNNYYGSAAPASGGPGGRAGPCFDQ 196
Query: 159 ATG-LSPKASLLHQDSESRRLPRSNSLGAGGKILSQRPPWSLIHRVLP----DHPWGTLN 213
G SP ++H S + + GA G + P H P +H G
Sbjct: 197 HGGQQSPGMGMMHSASAA-------AAGAPGSM----DPLQNSHEGYPNSQCNHYPGYSR 245
Query: 214 PSVSWGGGGPGTGWG 228
P GGGG G G G
Sbjct: 246 PGAGGGGGGGGGGGG 260
Score = 34.3 bits (77), Expect = 0.16
Identities = 55/208 (26%), Positives = 80/208 (38%), Gaps = 31/208 (14%)
Query: 45 PQLGQPSSTGPSNSEHPQPALDPRSNDLARVP--LKLSVPASDGF----PPAGG--SAVQ 96
P+L PS + + PQ SN +A VP LK PAS P GG S +
Sbjct: 1158 PKLQPPSPANSGSLQGPQTPQSTGSNSMAEVPGDLKPPTPASTPHGQMTPMQGGRSSTIS 1217
Query: 97 RWPP-----SWGLPAMDSWPPEDPWQMMAAAAEDRLGEALPEELSYLSSAAALAP--GSG 149
P P +S P P+Q G ++P+ + + P G
Sbjct: 1218 VHDPFSDVSDSSFPKRNSMTPNAPYQQ---------GMSMPDVMGRMPYEPNKDPFGGMR 1268
Query: 150 PLPGESSPDAT-GLSPKASLLHQDSESRRLPRSNSLGAGGKILSQRPPWSLIHRVLPDHP 208
+PG S P T G P +S+ ++S SN LG G + Q+ P+ + P
Sbjct: 1269 KVPGSSEPFMTQGQMPNSSMQDMYNQSPSGAMSN-LGMGQR---QQFPYGASYD-RRHEP 1323
Query: 209 WGTLNPSVSWGGGGPGTGWGTRPMPHPE 236
+G P G P G G +P +P+
Sbjct: 1324 YGQQYPGQGPPSGQPPYG-GHQPGLYPQ 1350
Score = 33.5 bits (75), Expect = 0.26
Identities = 36/150 (24%), Positives = 57/150 (38%), Gaps = 26/150 (17%)
Query: 45 PQLGQ--PSSTGPSNSEHPQP--------ALDPRSNDLARVPLKLS----------VPAS 84
PQ+ Q P TGPS S HP P + +SN ++S PA
Sbjct: 729 PQMAQYGPQQTGPSMSPHPSPGGQMHAGISSFQQSNSSGTYGPQMSQYGPQGNYSRPPAY 788
Query: 85 DGFPPAGGSAVQRWPPSWGLPAMDSWPPEDPWQMMAAAAEDRLGEALPEELSYLSSAAAL 144
G P A S P G+ A + + P Q A R+ A + + + +++
Sbjct: 789 SGVPSASYSGP---GPGMGISANNQMHGQGPSQPCGAVPLGRMPSAGMQNRPFPGNMSSM 845
Query: 145 APGSGPLPGESSPDATGLSPKASLLHQDSE 174
P S PG S G+ P +++ ++
Sbjct: 846 TPSS---PGMSQQGGPGMGPPMPTVNRKAQ 872
>gi|40068462 AT rich interactive domain 1B (SWI1-like) isoform 3
[Homo sapiens]
Length = 2178
Score = 42.4 bits (98), Expect = 6e-04
Identities = 71/283 (25%), Positives = 105/283 (37%), Gaps = 30/283 (10%)
Query: 21 LPGLFARSIGVVEEKVSQNLGTNLPQLGQPSSTGPSNSEHPQPALDPRSNDLARVPLKLS 80
LP L + SI + L + + G SS G ++ P S L+ +P S
Sbjct: 607 LPDL-SGSIDDLPTGTEATLSSAVSASGSTSSQGDQSNPAQSPFSPHASPHLSSIPGGPS 665
Query: 81 VPASDGFPPAGGSAVQRWPPSWGLPAMDSWPPEDPWQMMAAAAEDRLGEA-LPEELSYLS 139
P+ G P G + + P S PP+ P +++ L ++ +P+E +++
Sbjct: 666 -PSPVG-SPVGSNQSRSGPISPASIPGSQMPPQPPGSQSESSSHPALSQSPMPQERGFMA 723
Query: 140 SAAALAPGSGPLPGESSPDATG--LSPKAS---LLHQDSESRRLPRSNSLGAGGKILSQR 194
P + P TG +SP S +H S +SNS G G +SQ
Sbjct: 724 GTQR-----NPQMAQYGPQQTGPSMSPHPSPGGQMHAGISS--FQQSNSSGTYGPQMSQY 776
Query: 195 PPWSLIHRVLPDHPWGTLNPSVSWGGGGPGTGWGTRPMPHPEGIWGINNQPPGTSWGNIN 254
P R P + PS S+ G GPG G H +G +QP G +
Sbjct: 777 GPQGNYSRP----PAYSGVPSASYSGPGPGMGISANNQMHGQG----PSQPCGAV--PLG 826
Query: 255 RYPGGSWGNINRYPGGSWGNINRYPGGSWGNIHLYPGINNPFP 297
R P N +PG PG S PG+ P P
Sbjct: 827 RMPSAGMQN-RPFPGNMSSMTPSSPGMSQQG---GPGMGPPMP 865
Score = 37.4 bits (85), Expect = 0.018
Identities = 49/195 (25%), Positives = 66/195 (33%), Gaps = 39/195 (20%)
Query: 45 PQLGQPSSTGPSNS------EHPQPALDPRSNDLARVPLKLSVPASDGFPPAGGSAVQRW 98
P + QP G +S + P P L + D P K+ PA + G A+
Sbjct: 94 PDMEQPQHGGAKDSAAGGQADPPGPPLLSKPGDEDDAPPKMGEPAGGRYEHPGLGALGTQ 153
Query: 99 PPSWGLPAMDSWPPEDPWQMMAAAAEDRLGEALPEELSYLSSAAALAPGSGPLPGESSPD 158
P +P P A+PE +Y SAA + G G G
Sbjct: 154 QPPVAVPGGGGGP-----------------AAVPEFNNYYGSAAPASGGPGGRAGPCFDQ 196
Query: 159 ATG-LSPKASLLHQDSESRRLPRSNSLGAGGKILSQRPPWSLIHRVLP----DHPWGTLN 213
G SP ++H S + + GA G + P H P +H G
Sbjct: 197 HGGQQSPGMGMMHSASAA-------AAGAPGSM----DPLQNSHEGYPNSQCNHYPGYSR 245
Query: 214 PSVSWGGGGPGTGWG 228
P GGGG G G G
Sbjct: 246 PGAGGGGGGGGGGGG 260
Score = 34.3 bits (77), Expect = 0.16
Identities = 55/208 (26%), Positives = 80/208 (38%), Gaps = 31/208 (14%)
Query: 45 PQLGQPSSTGPSNSEHPQPALDPRSNDLARVP--LKLSVPASDGF----PPAGG--SAVQ 96
P+L PS + + PQ SN +A VP LK PAS P GG S +
Sbjct: 1105 PKLQPPSPANSGSLQGPQTPQSTGSNSMAEVPGDLKPPTPASTPHGQMTPMQGGRSSTIS 1164
Query: 97 RWPP-----SWGLPAMDSWPPEDPWQMMAAAAEDRLGEALPEELSYLSSAAALAP--GSG 149
P P +S P P+Q G ++P+ + + P G
Sbjct: 1165 VHDPFSDVSDSSFPKRNSMTPNAPYQQ---------GMSMPDVMGRMPYEPNKDPFGGMR 1215
Query: 150 PLPGESSPDAT-GLSPKASLLHQDSESRRLPRSNSLGAGGKILSQRPPWSLIHRVLPDHP 208
+PG S P T G P +S+ ++S SN LG G + Q+ P+ + P
Sbjct: 1216 KVPGSSEPFMTQGQMPNSSMQDMYNQSPSGAMSN-LGMGQR---QQFPYGASYD-RRHEP 1270
Query: 209 WGTLNPSVSWGGGGPGTGWGTRPMPHPE 236
+G P G P G G +P +P+
Sbjct: 1271 YGQQYPGQGPPSGQPPYG-GHQPGLYPQ 1297
Score = 33.5 bits (75), Expect = 0.26
Identities = 36/150 (24%), Positives = 57/150 (38%), Gaps = 26/150 (17%)
Query: 45 PQLGQ--PSSTGPSNSEHPQP--------ALDPRSNDLARVPLKLS----------VPAS 84
PQ+ Q P TGPS S HP P + +SN ++S PA
Sbjct: 729 PQMAQYGPQQTGPSMSPHPSPGGQMHAGISSFQQSNSSGTYGPQMSQYGPQGNYSRPPAY 788
Query: 85 DGFPPAGGSAVQRWPPSWGLPAMDSWPPEDPWQMMAAAAEDRLGEALPEELSYLSSAAAL 144
G P A S P G+ A + + P Q A R+ A + + + +++
Sbjct: 789 SGVPSASYSGP---GPGMGISANNQMHGQGPSQPCGAVPLGRMPSAGMQNRPFPGNMSSM 845
Query: 145 APGSGPLPGESSPDATGLSPKASLLHQDSE 174
P S PG S G+ P +++ ++
Sbjct: 846 TPSS---PGMSQQGGPGMGPPMPTVNRKAQ 872
>gi|21361376 splicing factor 3a, subunit 2 [Homo sapiens]
Length = 464
Score = 41.6 bits (96), Expect = 0.001
Identities = 75/275 (27%), Positives = 102/275 (37%), Gaps = 49/275 (17%)
Query: 54 GPSNSEHPQPALDPRSNDLA-RVPLKLSVPASDGFPPAGGSAVQRWPPSWGLPAMDSWPP 112
GP + P P P N L R PL S+P PP GG + PP+ P+ PP
Sbjct: 226 GPPGVKRPPP---PLMNGLPPRPPLPESLPP----PPPGGLPLPPMPPTGPAPSGPPGPP 278
Query: 113 EDPWQMMAAAAEDRLGEALPEELSYLSSAAALAPGSG---PLPGESSPDATGLSPKASLL 169
+ P G P + + ++ P G P PG P A G+ P S +
Sbjct: 279 QLP--------PPAPGVHPPAPVVHPPASGVHPPAPGVHPPAPG-VHPPAPGVHPPTSGV 329
Query: 170 HQDSESRRLPRSNSLGAGGKILSQRPPWSLIHRVLPD-HPWGTLNPSVSWGGGGPGTGWG 228
H + P + G PP +H P HP PS PG
Sbjct: 330 HPPAPGVHPP---APGVHPPAPGVHPPAPGVHPPAPGVHP----PPSAGVHPQAPGV-HP 381
Query: 229 TRPMPHPEGIWGINNQPPGTSWGNINRYPGGSWGNINRYPGG---SWGNINRYPGGSWGN 285
P HP+ G++ PG + PG ++ P G S ++ P G
Sbjct: 382 AAPAVHPQAP-GVHPPAPGMH----PQAPG-----VHPQPPGVHPSAPGVHPQPPG---- 427
Query: 286 IH-LYPGINNPFP-PGVLRPPGSSWNIPAGFPNPP 318
+H PG++ P P P +LRPP S P P PP
Sbjct: 428 VHPSNPGVHPPTPMPPMLRPPLPSEG-PGNIPPPP 461
>gi|192807323 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin a4 isoform A [Homo sapiens]
Length = 1679
Score = 40.8 bits (94), Expect = 0.002
Identities = 60/228 (26%), Positives = 81/228 (35%), Gaps = 37/228 (16%)
Query: 125 DRLGEALPEELSYLSSAAALAPGSGPLPGESSPDATGLSPKASLLHQD-SESRRLPRSNS 183
D+ + P L A++ P SGP G G +P Q + R P +
Sbjct: 114 DQHSQGYPSPLGGSEHASSPVPASGPSSGPQMSSGPGGAPLDGADPQALGQQNRGPTPFN 173
Query: 184 LGAGGKILSQRPPWSLIHR--VLPDHPWGTLN-----------------PSVSWGGGGPG 224
++ +Q + ++ R LPDH + PSVS G GPG
Sbjct: 174 QNQLHQLRAQIMAYKMLARGQPLPDHLQMAVQGKRPMPGMQQQMPTLPPPSVSATGPGPG 233
Query: 225 TGWGTRPMP--------HPEGIWGINNQPPGTSW---GNINRYPGGSWGNINRYPGGSWG 273
G G P P P G+ G N PPG S G + PGG +P G
Sbjct: 234 PGPGPGPGPGPAPPNYSRPHGMGGPNMPPPGPSGVPPGMPGQPPGGP---PKPWPEGPMA 290
Query: 274 NINRYPGGSWGNIHLYP-GINNPFPPGVLRPPGSSWNIPAGFPNPPSP 320
N I P G +P PP V PP +S +P +P P
Sbjct: 291 NAAAPTSTPQKLIPPQPTGRPSPAPPAV--PPAASPVMPPQTQSPGQP 336
>gi|192807320 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin a4 isoform F [Homo sapiens]
Length = 1613
Score = 40.8 bits (94), Expect = 0.002
Identities = 60/228 (26%), Positives = 81/228 (35%), Gaps = 37/228 (16%)
Query: 125 DRLGEALPEELSYLSSAAALAPGSGPLPGESSPDATGLSPKASLLHQD-SESRRLPRSNS 183
D+ + P L A++ P SGP G G +P Q + R P +
Sbjct: 114 DQHSQGYPSPLGGSEHASSPVPASGPSSGPQMSSGPGGAPLDGADPQALGQQNRGPTPFN 173
Query: 184 LGAGGKILSQRPPWSLIHR--VLPDHPWGTLN-----------------PSVSWGGGGPG 224
++ +Q + ++ R LPDH + PSVS G GPG
Sbjct: 174 QNQLHQLRAQIMAYKMLARGQPLPDHLQMAVQGKRPMPGMQQQMPTLPPPSVSATGPGPG 233
Query: 225 TGWGTRPMP--------HPEGIWGINNQPPGTSW---GNINRYPGGSWGNINRYPGGSWG 273
G G P P P G+ G N PPG S G + PGG +P G
Sbjct: 234 PGPGPGPGPGPAPPNYSRPHGMGGPNMPPPGPSGVPPGMPGQPPGGP---PKPWPEGPMA 290
Query: 274 NINRYPGGSWGNIHLYP-GINNPFPPGVLRPPGSSWNIPAGFPNPPSP 320
N I P G +P PP V PP +S +P +P P
Sbjct: 291 NAAAPTSTPQKLIPPQPTGRPSPAPPAV--PPAASPVMPPQTQSPGQP 336
>gi|192807318 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin a4 isoform E [Homo sapiens]
Length = 1614
Score = 40.8 bits (94), Expect = 0.002
Identities = 60/228 (26%), Positives = 81/228 (35%), Gaps = 37/228 (16%)
Query: 125 DRLGEALPEELSYLSSAAALAPGSGPLPGESSPDATGLSPKASLLHQD-SESRRLPRSNS 183
D+ + P L A++ P SGP G G +P Q + R P +
Sbjct: 114 DQHSQGYPSPLGGSEHASSPVPASGPSSGPQMSSGPGGAPLDGADPQALGQQNRGPTPFN 173
Query: 184 LGAGGKILSQRPPWSLIHR--VLPDHPWGTLN-----------------PSVSWGGGGPG 224
++ +Q + ++ R LPDH + PSVS G GPG
Sbjct: 174 QNQLHQLRAQIMAYKMLARGQPLPDHLQMAVQGKRPMPGMQQQMPTLPPPSVSATGPGPG 233
Query: 225 TGWGTRPMP--------HPEGIWGINNQPPGTSW---GNINRYPGGSWGNINRYPGGSWG 273
G G P P P G+ G N PPG S G + PGG +P G
Sbjct: 234 PGPGPGPGPGPAPPNYSRPHGMGGPNMPPPGPSGVPPGMPGQPPGGP---PKPWPEGPMA 290
Query: 274 NINRYPGGSWGNIHLYP-GINNPFPPGVLRPPGSSWNIPAGFPNPPSP 320
N I P G +P PP V PP +S +P +P P
Sbjct: 291 NAAAPTSTPQKLIPPQPTGRPSPAPPAV--PPAASPVMPPQTQSPGQP 336
>gi|192807316 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin a4 isoform D [Homo sapiens]
Length = 1616
Score = 40.8 bits (94), Expect = 0.002
Identities = 60/228 (26%), Positives = 81/228 (35%), Gaps = 37/228 (16%)
Query: 125 DRLGEALPEELSYLSSAAALAPGSGPLPGESSPDATGLSPKASLLHQD-SESRRLPRSNS 183
D+ + P L A++ P SGP G G +P Q + R P +
Sbjct: 114 DQHSQGYPSPLGGSEHASSPVPASGPSSGPQMSSGPGGAPLDGADPQALGQQNRGPTPFN 173
Query: 184 LGAGGKILSQRPPWSLIHR--VLPDHPWGTLN-----------------PSVSWGGGGPG 224
++ +Q + ++ R LPDH + PSVS G GPG
Sbjct: 174 QNQLHQLRAQIMAYKMLARGQPLPDHLQMAVQGKRPMPGMQQQMPTLPPPSVSATGPGPG 233
Query: 225 TGWGTRPMP--------HPEGIWGINNQPPGTSW---GNINRYPGGSWGNINRYPGGSWG 273
G G P P P G+ G N PPG S G + PGG +P G
Sbjct: 234 PGPGPGPGPGPAPPNYSRPHGMGGPNMPPPGPSGVPPGMPGQPPGGP---PKPWPEGPMA 290
Query: 274 NINRYPGGSWGNIHLYP-GINNPFPPGVLRPPGSSWNIPAGFPNPPSP 320
N I P G +P PP V PP +S +P +P P
Sbjct: 291 NAAAPTSTPQKLIPPQPTGRPSPAPPAV--PPAASPVMPPQTQSPGQP 336
>gi|192807314 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin a4 isoform C [Homo sapiens]
Length = 1617
Score = 40.8 bits (94), Expect = 0.002
Identities = 60/228 (26%), Positives = 81/228 (35%), Gaps = 37/228 (16%)
Query: 125 DRLGEALPEELSYLSSAAALAPGSGPLPGESSPDATGLSPKASLLHQD-SESRRLPRSNS 183
D+ + P L A++ P SGP G G +P Q + R P +
Sbjct: 114 DQHSQGYPSPLGGSEHASSPVPASGPSSGPQMSSGPGGAPLDGADPQALGQQNRGPTPFN 173
Query: 184 LGAGGKILSQRPPWSLIHR--VLPDHPWGTLN-----------------PSVSWGGGGPG 224
++ +Q + ++ R LPDH + PSVS G GPG
Sbjct: 174 QNQLHQLRAQIMAYKMLARGQPLPDHLQMAVQGKRPMPGMQQQMPTLPPPSVSATGPGPG 233
Query: 225 TGWGTRPMP--------HPEGIWGINNQPPGTSW---GNINRYPGGSWGNINRYPGGSWG 273
G G P P P G+ G N PPG S G + PGG +P G
Sbjct: 234 PGPGPGPGPGPAPPNYSRPHGMGGPNMPPPGPSGVPPGMPGQPPGGP---PKPWPEGPMA 290
Query: 274 NINRYPGGSWGNIHLYP-GINNPFPPGVLRPPGSSWNIPAGFPNPPSP 320
N I P G +P PP V PP +S +P +P P
Sbjct: 291 NAAAPTSTPQKLIPPQPTGRPSPAPPAV--PPAASPVMPPQTQSPGQP 336
>gi|192807312 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin a4 isoform B [Homo sapiens]
Length = 1647
Score = 40.8 bits (94), Expect = 0.002
Identities = 60/228 (26%), Positives = 81/228 (35%), Gaps = 37/228 (16%)
Query: 125 DRLGEALPEELSYLSSAAALAPGSGPLPGESSPDATGLSPKASLLHQD-SESRRLPRSNS 183
D+ + P L A++ P SGP G G +P Q + R P +
Sbjct: 114 DQHSQGYPSPLGGSEHASSPVPASGPSSGPQMSSGPGGAPLDGADPQALGQQNRGPTPFN 173
Query: 184 LGAGGKILSQRPPWSLIHR--VLPDHPWGTLN-----------------PSVSWGGGGPG 224
++ +Q + ++ R LPDH + PSVS G GPG
Sbjct: 174 QNQLHQLRAQIMAYKMLARGQPLPDHLQMAVQGKRPMPGMQQQMPTLPPPSVSATGPGPG 233
Query: 225 TGWGTRPMP--------HPEGIWGINNQPPGTSW---GNINRYPGGSWGNINRYPGGSWG 273
G G P P P G+ G N PPG S G + PGG +P G
Sbjct: 234 PGPGPGPGPGPAPPNYSRPHGMGGPNMPPPGPSGVPPGMPGQPPGGP---PKPWPEGPMA 290
Query: 274 NINRYPGGSWGNIHLYP-GINNPFPPGVLRPPGSSWNIPAGFPNPPSP 320
N I P G +P PP V PP +S +P +P P
Sbjct: 291 NAAAPTSTPQKLIPPQPTGRPSPAPPAV--PPAASPVMPPQTQSPGQP 336
>gi|21071056 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin a4 isoform B [Homo sapiens]
Length = 1647
Score = 40.8 bits (94), Expect = 0.002
Identities = 60/228 (26%), Positives = 81/228 (35%), Gaps = 37/228 (16%)
Query: 125 DRLGEALPEELSYLSSAAALAPGSGPLPGESSPDATGLSPKASLLHQD-SESRRLPRSNS 183
D+ + P L A++ P SGP G G +P Q + R P +
Sbjct: 114 DQHSQGYPSPLGGSEHASSPVPASGPSSGPQMSSGPGGAPLDGADPQALGQQNRGPTPFN 173
Query: 184 LGAGGKILSQRPPWSLIHR--VLPDHPWGTLN-----------------PSVSWGGGGPG 224
++ +Q + ++ R LPDH + PSVS G GPG
Sbjct: 174 QNQLHQLRAQIMAYKMLARGQPLPDHLQMAVQGKRPMPGMQQQMPTLPPPSVSATGPGPG 233
Query: 225 TGWGTRPMP--------HPEGIWGINNQPPGTSW---GNINRYPGGSWGNINRYPGGSWG 273
G G P P P G+ G N PPG S G + PGG +P G
Sbjct: 234 PGPGPGPGPGPAPPNYSRPHGMGGPNMPPPGPSGVPPGMPGQPPGGP---PKPWPEGPMA 290
Query: 274 NINRYPGGSWGNIHLYP-GINNPFPPGVLRPPGSSWNIPAGFPNPPSP 320
N I P G +P PP V PP +S +P +P P
Sbjct: 291 NAAAPTSTPQKLIPPQPTGRPSPAPPAV--PPAASPVMPPQTQSPGQP 336
>gi|154355000 KH-type splicing regulatory protein [Homo sapiens]
Length = 711
Score = 40.0 bits (92), Expect = 0.003
Identities = 41/141 (29%), Positives = 53/141 (37%), Gaps = 27/141 (19%)
Query: 31 VVEEKVSQNLGTNLPQLGQPSSTGPSNSEHPQPALDPRSNDLARVPLKLSVPASDGFPP- 89
++EEK+ L P G P GP +P P G PP
Sbjct: 490 LIEEKIEGPLCPVGPGPGGPGPAGPMGPFNPGPFNQ----------------GPPGAPPH 533
Query: 90 AGGSAVQRWPP-SWG--LPAMDSWPPEDPWQMMAAAAEDRLGEALPEELSYLSSAAALAP 146
AGG ++PP WG P P DP + AAAA+ A +Y S P
Sbjct: 534 AGGPPPHQYPPQGWGNTYPQWQPPAPHDPSKAAAAAADPNAAWA-----AYYSHYYQQPP 588
Query: 147 G--SGPLPGESSPDATGLSPK 165
G GP P ++P A G P+
Sbjct: 589 GPVPGPAPAPAAPPAQGEPPQ 609
Score = 28.9 bits (63), Expect = 6.5
Identities = 20/59 (33%), Positives = 23/59 (38%), Gaps = 5/59 (8%)
Query: 219 GGGGPGTGWGTRPMPHPEGIWGINNQPPGTSWGNINRYPGGSWGNINRYPGGSWGNINR 277
GGGG G G P P P G PG GGS G ++ PGG I +
Sbjct: 18 GGGGGAGGAGGGPPPGPPGAGDRGGGGPGGGGPG-----GGSAGGPSQPPGGGGPGIRK 71
>gi|118572613 splicing coactivator subunit SRm300 [Homo sapiens]
Length = 2752
Score = 38.5 bits (88), Expect = 0.008
Identities = 35/131 (26%), Positives = 54/131 (41%), Gaps = 10/131 (7%)
Query: 99 PPSWGLPAMDSWPPEDPWQM-MAAAAEDRLGEALPEELSYLSSAAALAPGSGPLPG---- 153
PPS P D PP+ P ++ ++++E P ++S +S++ +P P PG
Sbjct: 393 PPSEASPTRDRSPPKSPEKLPQSSSSESSPPSPQPTKVSRHASSSPESPKPAPAPGSHRE 452
Query: 154 -ESSPDATGLS---PKASLLHQDSESRRLPRSNSLGAGGKILSQ-RPPWSLIHRVLPDHP 208
SSP + S K H + SRR+ RS S + S+ R P H
Sbjct: 453 ISSSPTSKNRSHGRAKRDKSHSHTPSRRMGRSRSPATAKRGRSRSRTPTKRGHSRSRSPQ 512
Query: 209 WGTLNPSVSWG 219
W + WG
Sbjct: 513 WRRSRSAQRWG 523
>gi|122056628 prion protein preproprotein [Homo sapiens]
Length = 253
Score = 38.1 bits (87), Expect = 0.011
Identities = 27/73 (36%), Positives = 32/73 (43%), Gaps = 8/73 (10%)
Query: 244 QPPGTSWGNINRYPGGSWGNINRYP---GGSWGNINRYPGGSWGNIHLYPGINNPFPPGV 300
+P G + G +RYPG NRYP GG WG + GG WG H G P G
Sbjct: 27 KPGGWNTGG-SRYPGQGSPGGNRYPPQGGGGWGQPH---GGGWGQPH-GGGWGQPHGGGW 81
Query: 301 LRPPGSSWNIPAG 313
+P G W G
Sbjct: 82 GQPHGGGWGQGGG 94
Score = 33.1 bits (74), Expect = 0.35
Identities = 27/82 (32%), Positives = 33/82 (40%), Gaps = 6/82 (7%)
Query: 233 PHPEGIWGINNQPPGTSWGNINRYPGGSWGNINRYPGGSWGNINRYPGGSWGNIHLYPGI 292
P P G ++ PG NRYP G + GG WG + GG WG H G
Sbjct: 26 PKPGGWNTGGSRYPGQGSPGGNRYPPQGGGGWGQPHGGGWGQPH---GGGWGQPH-GGGW 81
Query: 293 NNPFPPGVLRPPG--SSWNIPA 312
P G + G S WN P+
Sbjct: 82 GQPHGGGWGQGGGTHSQWNKPS 103
>gi|122056625 prion protein preproprotein [Homo sapiens]
Length = 253
Score = 38.1 bits (87), Expect = 0.011
Identities = 27/73 (36%), Positives = 32/73 (43%), Gaps = 8/73 (10%)
Query: 244 QPPGTSWGNINRYPGGSWGNINRYP---GGSWGNINRYPGGSWGNIHLYPGINNPFPPGV 300
+P G + G +RYPG NRYP GG WG + GG WG H G P G
Sbjct: 27 KPGGWNTGG-SRYPGQGSPGGNRYPPQGGGGWGQPH---GGGWGQPH-GGGWGQPHGGGW 81
Query: 301 LRPPGSSWNIPAG 313
+P G W G
Sbjct: 82 GQPHGGGWGQGGG 94
Score = 33.1 bits (74), Expect = 0.35
Identities = 27/82 (32%), Positives = 33/82 (40%), Gaps = 6/82 (7%)
Query: 233 PHPEGIWGINNQPPGTSWGNINRYPGGSWGNINRYPGGSWGNINRYPGGSWGNIHLYPGI 292
P P G ++ PG NRYP G + GG WG + GG WG H G
Sbjct: 26 PKPGGWNTGGSRYPGQGSPGGNRYPPQGGGGWGQPHGGGWGQPH---GGGWGQPH-GGGW 81
Query: 293 NNPFPPGVLRPPG--SSWNIPA 312
P G + G S WN P+
Sbjct: 82 GQPHGGGWGQGGGTHSQWNKPS 103
>gi|122056623 prion protein preproprotein [Homo sapiens]
Length = 253
Score = 38.1 bits (87), Expect = 0.011
Identities = 27/73 (36%), Positives = 32/73 (43%), Gaps = 8/73 (10%)
Query: 244 QPPGTSWGNINRYPGGSWGNINRYP---GGSWGNINRYPGGSWGNIHLYPGINNPFPPGV 300
+P G + G +RYPG NRYP GG WG + GG WG H G P G
Sbjct: 27 KPGGWNTGG-SRYPGQGSPGGNRYPPQGGGGWGQPH---GGGWGQPH-GGGWGQPHGGGW 81
Query: 301 LRPPGSSWNIPAG 313
+P G W G
Sbjct: 82 GQPHGGGWGQGGG 94
Score = 33.1 bits (74), Expect = 0.35
Identities = 27/82 (32%), Positives = 33/82 (40%), Gaps = 6/82 (7%)
Query: 233 PHPEGIWGINNQPPGTSWGNINRYPGGSWGNINRYPGGSWGNINRYPGGSWGNIHLYPGI 292
P P G ++ PG NRYP G + GG WG + GG WG H G
Sbjct: 26 PKPGGWNTGGSRYPGQGSPGGNRYPPQGGGGWGQPHGGGWGQPH---GGGWGQPH-GGGW 81
Query: 293 NNPFPPGVLRPPG--SSWNIPA 312
P G + G S WN P+
Sbjct: 82 GQPHGGGWGQGGGTHSQWNKPS 103
>gi|34335270 prion protein preproprotein [Homo sapiens]
Length = 253
Score = 38.1 bits (87), Expect = 0.011
Identities = 27/73 (36%), Positives = 32/73 (43%), Gaps = 8/73 (10%)
Query: 244 QPPGTSWGNINRYPGGSWGNINRYP---GGSWGNINRYPGGSWGNIHLYPGINNPFPPGV 300
+P G + G +RYPG NRYP GG WG + GG WG H G P G
Sbjct: 27 KPGGWNTGG-SRYPGQGSPGGNRYPPQGGGGWGQPH---GGGWGQPH-GGGWGQPHGGGW 81
Query: 301 LRPPGSSWNIPAG 313
+P G W G
Sbjct: 82 GQPHGGGWGQGGG 94
Score = 33.1 bits (74), Expect = 0.35
Identities = 27/82 (32%), Positives = 33/82 (40%), Gaps = 6/82 (7%)
Query: 233 PHPEGIWGINNQPPGTSWGNINRYPGGSWGNINRYPGGSWGNINRYPGGSWGNIHLYPGI 292
P P G ++ PG NRYP G + GG WG + GG WG H G
Sbjct: 26 PKPGGWNTGGSRYPGQGSPGGNRYPPQGGGGWGQPHGGGWGQPH---GGGWGQPH-GGGW 81
Query: 293 NNPFPPGVLRPPG--SSWNIPA 312
P G + G S WN P+
Sbjct: 82 GQPHGGGWGQGGGTHSQWNKPS 103
>gi|4506113 prion protein preproprotein [Homo sapiens]
Length = 253
Score = 38.1 bits (87), Expect = 0.011
Identities = 27/73 (36%), Positives = 32/73 (43%), Gaps = 8/73 (10%)
Query: 244 QPPGTSWGNINRYPGGSWGNINRYP---GGSWGNINRYPGGSWGNIHLYPGINNPFPPGV 300
+P G + G +RYPG NRYP GG WG + GG WG H G P G
Sbjct: 27 KPGGWNTGG-SRYPGQGSPGGNRYPPQGGGGWGQPH---GGGWGQPH-GGGWGQPHGGGW 81
Query: 301 LRPPGSSWNIPAG 313
+P G W G
Sbjct: 82 GQPHGGGWGQGGG 94
Score = 33.1 bits (74), Expect = 0.35
Identities = 27/82 (32%), Positives = 33/82 (40%), Gaps = 6/82 (7%)
Query: 233 PHPEGIWGINNQPPGTSWGNINRYPGGSWGNINRYPGGSWGNINRYPGGSWGNIHLYPGI 292
P P G ++ PG NRYP G + GG WG + GG WG H G
Sbjct: 26 PKPGGWNTGGSRYPGQGSPGGNRYPPQGGGGWGQPHGGGWGQPH---GGGWGQPH-GGGW 81
Query: 293 NNPFPPGVLRPPG--SSWNIPA 312
P G + G S WN P+
Sbjct: 82 GQPHGGGWGQGGGTHSQWNKPS 103
>gi|116805348 trinucleotide repeat containing 6A [Homo sapiens]
Length = 1962
Score = 38.1 bits (87), Expect = 0.011
Identities = 50/201 (24%), Positives = 78/201 (38%), Gaps = 32/201 (15%)
Query: 85 DGFPPA---GGSAVQRWPPSW-------GLPAMDSWPPEDPWQMMAAAAEDRLGEALPEE 134
DG+P A GS+ WPP + G P +D P DP+ + + + L E
Sbjct: 1592 DGWPRAKSPNGSSSVNWPPEFRPGEPWKGYPNID--PETDPY-VTPGSVINNLSINTVRE 1648
Query: 135 LSYLSSAAALAPGSGPLPGESSPDATGLSPKASLLHQDSESRRLPRSNSLGAGGKILSQR 194
+ +L + GS + P + S + + S +++ + K+
Sbjct: 1649 VDHLRDRNS---GSSSSLNTTLPSTSAWSSIRASNYNVPLSSTAQSTSARNSDSKLTWS- 1704
Query: 195 PPWSLIHRVLPDHPWGTLNPSVSWGGGGPGTGWGTRPMPHPEGIWGINNQPPGTSWGNIN 254
P S+ + L W P + T P P G+ G +PP ++W N
Sbjct: 1705 -PGSVTNTSLAHELWKVPLPPKNI----------TAPSRPPPGLTG--QKPPLSTWDNSP 1751
Query: 255 RYPGGSWGNIN-RY-PGGSWG 273
GG WGN + RY PG SWG
Sbjct: 1752 LRIGGGWGNSDARYTPGSSWG 1772
Score = 35.0 bits (79), Expect = 0.091
Identities = 22/56 (39%), Positives = 29/56 (51%), Gaps = 6/56 (10%)
Query: 231 PMPHPEGIWGINNQPPGTSWGNINRYPGGSWGNINRYPGGSWGNIN-RY-PGGSWG 284
P+P P+ I + PPG + + P +W N GG WGN + RY PG SWG
Sbjct: 1721 PLP-PKNITAPSRPPPGLTG---QKPPLSTWDNSPLRIGGGWGNSDARYTPGSSWG 1772
Score = 31.2 bits (69), Expect = 1.3
Identities = 22/73 (30%), Positives = 31/73 (42%), Gaps = 9/73 (12%)
Query: 209 WGT-LNPSVSWGGGG-----PGTGWGTRPMPHPEGIWGINNQPPGTSWGNINRYPGGSWG 262
WG +NP+ S G P GWG P + WG +++P + N + GSWG
Sbjct: 898 WGNNINPNNSSGWDESSKPTPSQGWGDPPKSNQSLGWGDSSKPVSSPDWNKQQDIVGSWG 957
Query: 263 ---NINRYPGGSW 272
+ PG W
Sbjct: 958 IPPATGKPPGTGW 970
Score = 28.5 bits (62), Expect = 8.5
Identities = 51/171 (29%), Positives = 69/171 (40%), Gaps = 43/171 (25%)
Query: 179 PRSN-SLGAGGKILSQRPPWSLIHRVLPDHPWGTLNPSV-SWG-----GGGPGTGWGTRP 231
P+SN SLG G S +P S PD W V SWG G PGTGW P
Sbjct: 926 PKSNQSLGWGD---SSKPVSS------PD--WNKQQDIVGSWGIPPATGKPPGTGWLGGP 974
Query: 232 MPHP---EGIWGINNQPPGTSWGNINRYPGGS-WGNINRYPGGSWGNINRY----PGGS- 282
+P P E G P + + G S WG+ ++Y ++ N+N + P G+
Sbjct: 975 IPAPAKEEEPTGWEEPSPESIRRKMEIDDGTSAWGDPSKY---NYKNVNMWNKNVPNGNS 1031
Query: 283 ----WGNIH--LYP--GINNPFPPGVLRPPGSSWNIPAGFPNPPSPRLQWG 325
+H L P I+N GS W P G P+ P+ + G
Sbjct: 1032 RSDQQAQVHQLLTPASAISNKEASS-----GSGWGEPWGEPSTPATTVDNG 1077
>gi|79750944 ubiquitin specific peptidase 42 [Homo sapiens]
Length = 1316
Score = 37.4 bits (85), Expect = 0.018
Identities = 44/172 (25%), Positives = 66/172 (38%), Gaps = 8/172 (4%)
Query: 49 QPSSTGPSNSEHPQPALDPRSNDLARVPLKLSVPAS-DGFPPAGGSAVQRWPPSWGLPAM 107
QP S + E P A S A P PA+ +G A A + PPS G +
Sbjct: 751 QPGSPAAESLEEPDAAAGLSSTKKAPPPRDPGTPATKEGAWEAMAVAPEEPPPSAGEDIV 810
Query: 108 -DSWPPE--DPWQMMAAAAE-DRLGEALPEELSYLSSAAALAPGSGPLPGESSPDATGLS 163
D+ PP+ DP + A+ + + + E S+ A G P P S +
Sbjct: 811 GDTAPPDLCDPGSLTGDASPLSQDAKGMIAEGPRDSALAEAPEGLSPAPPARSEEPC--- 867
Query: 164 PKASLLHQDSESRRLPRSNSLGAGGKILSQRPPWSLIHRVLPDHPWGTLNPS 215
+ L+H + R + S G ++RPP ++ HP G PS
Sbjct: 868 EQPLLVHPSGDHARDAQDPSQSLGAPEAAERPPAPVLDMAPAGHPEGDAEPS 919
>gi|117320535 proline-rich protein 3 isoform a [Homo sapiens]
Length = 188
Score = 37.4 bits (85), Expect = 0.018
Identities = 28/89 (31%), Positives = 36/89 (40%), Gaps = 17/89 (19%)
Query: 196 PWSLIHRVLPDHPWGTLNPSVS-----WGGGGPGTGWGTRPMPHPEGIWGINNQPPGTSW 250
P S +HR P + P +S WG G G G R P+ G WG+N +PP
Sbjct: 54 PKSALHRGPPGSRGPLIPPLLSLPPPPWGRGPIRRGLGPRSSPYGRGWWGVNAEPP---- 109
Query: 251 GNINRYPGGSWGNINRYPGGSWGNINRYP 279
+PG G R GS+ R P
Sbjct: 110 -----FPGPGHGGPTR---GSFHKEQRNP 130
>gi|110618248 mucin and cadherin-like isoform 1 [Homo sapiens]
Length = 845
Score = 37.4 bits (85), Expect = 0.018
Identities = 48/183 (26%), Positives = 64/183 (34%), Gaps = 33/183 (18%)
Query: 148 SGPLPGESSPDATGLSPKASLLHQDSESRRLPRSNSLGAGGKILSQRPPWSLIHRVLPDH 207
+G E T S A+ + + S + P S + + PW+ +P
Sbjct: 425 AGAFYAEVEAHNTVTSGTATTVIEIQVSEQEPPSTDVPPSPEAGGTTGPWTSTTSEVPRP 484
Query: 208 PWGTLNPSVSWGGGGPGTGWGTRPMPHPEGIWGINNQPPGTSWGNINRYPGGSWGNINRY 267
P + PS + GGG G PHP G +PP +S PGG G N
Sbjct: 485 PEPSQGPSTTSSGGGTG--------PHPPS--GTTLRPPTSS------TPGGPPGAEN-- 526
Query: 268 PGGSWGNINRYPGGSWGNIHLYPGINNPFPPGV--------LRPPGSSWNIP---AGFPN 316
S + PGG PG + P PPGV P G + P P
Sbjct: 527 ---STSHQPATPGGDTAQTP-KPGTSQPMPPGVGTSTSHQPATPSGGTAQTPEPGTSQPM 582
Query: 317 PPS 319
PPS
Sbjct: 583 PPS 585
>gi|4502951 collagen type III alpha 1 preproprotein [Homo sapiens]
Length = 1466
Score = 36.6 bits (83), Expect = 0.031
Identities = 70/294 (23%), Positives = 91/294 (30%), Gaps = 44/294 (14%)
Query: 45 PQLGQPSSTGPSNSEHPQPALDPRSNDL----------ARVPLKLSVPASDGFPPAGGSA 94
P + + TGP N + D +S A P P + G P + GS
Sbjct: 138 PGICESCPTGPQNYSPQYDSYDVKSGVAVGGLAGYPGPAGPPGPPGPPGTSGHPGSPGSP 197
Query: 95 VQRWPPSWGLPAMDSWPPEDPWQMMAAAAEDRLGEALPEELSYLSSAAALAPGSGPLPGE 154
+ PP A S PP P + + + GE S PG LPG
Sbjct: 198 GYQGPPGEPGQAGPSGPPGPPGAIGPSGPAGKDGE----------SGRPGRPGERGLPGP 247
Query: 155 SS-------PDATGLSPKASLLHQDSESRRLPRSNSLGAGGKILSQRPPWSLIHRVLPDH 207
P G+ ++ E G G P + R P
Sbjct: 248 PGIKGPAGIPGFPGMKGHRGFDGRNGEKGETGAPGLKGENGLPGENGAPGPMGPRGAPGE 307
Query: 208 PWGTLNPSVSWGGGGPGTGWGTRPMPHPEGIWGINNQPPGTSWGNINRYPGGSWGNINRY 267
P + G G G+ P P G PPGT+ +PG
Sbjct: 308 RGRPGLPGAAGARGNDGAR-GSDGQPGPPG-------PPGTA-----GFPGSPGAKGEVG 354
Query: 268 PGGSWGNINRYPG--GSWGNIHLYPGINNPFPPGVLRPPGSSWNI-PAGFPNPP 318
P GS G+ N PG G G P PPG+ PG + PAG P P
Sbjct: 355 PAGSPGS-NGAPGQRGEPGPQGHAGAQGPPGPPGINGSPGGKGEMGPAGIPGAP 407
Score = 32.7 bits (73), Expect = 0.45
Identities = 33/109 (30%), Positives = 41/109 (37%), Gaps = 12/109 (11%)
Query: 219 GGGGPGTGWGTRPMPHPEGIWGINNQPPG---TSWGNINRYPGGSWGNINRYPGGSWGNI 275
G GP G G P P+G+ G P G + PG N N P G G+
Sbjct: 840 GVAGPPGGSGPAGPPGPQGVKGERGSPGGPGAAGFPGARGLPGPPGSNGNPGPPGPSGSP 899
Query: 276 NR-YPGGSWGNIHL--YPGINNP----FPPGVLRPPGSSWNIPAGFPNP 317
+ P G GN PG++ P PG PG+ P G P P
Sbjct: 900 GKDGPPGPAGNTGAPGSPGVSGPKGDAGQPGEKGSPGAQG--PPGAPGP 946
Score = 31.2 bits (69), Expect = 1.3
Identities = 40/123 (32%), Positives = 44/123 (35%), Gaps = 13/123 (10%)
Query: 205 PDHPWGTLNPSVSWGGGGPGTGWGTRPMPHPEGIWGINNQPPGTSWGNINRYPGGSWGNI 264
P P G S GG G G R +P P G G N PPG S P G GN
Sbjct: 853 PPGPQGVKGERGSPGGPGAAGFPGARGLPGPPGSNG-NPGPPGPSGSPGKDGPPGPAGNT 911
Query: 265 NR--YPGGSWGNINRYPGGSWGNIHLYPGINNPFPPGVLRPPG----SSWNIPAGFPNPP 318
PG S + G G+ PG PPG P G + AG P P
Sbjct: 912 GAPGSPGVSGPKGDAGQPGEKGS----PGAQG--PPGAPGPLGIAGITGARGLAGPPGMP 965
Query: 319 SPR 321
PR
Sbjct: 966 GPR 968
Score = 30.8 bits (68), Expect = 1.7
Identities = 73/279 (26%), Positives = 84/279 (30%), Gaps = 36/279 (12%)
Query: 41 GTNLPQLGQPSSTGPSNSEHPQPALDPRSNDLARVPLKLSVPASDGFPPAGGSAVQRWPP 100
G PQ G P TGP + P+ G P GG + P
Sbjct: 612 GETGPQ-GPPGPTGPGGDKGDTGPPGPQG--------------LQGLPGTGGPPGENGKP 656
Query: 101 SWGLPAMDSWPPEDPWQMMAAAAEDRLGEALPEELSYLSSAAALAPGSGPLPGESSPDAT 160
P D+ P P A A GE P L+ A L G+GP E A
Sbjct: 657 GEPGPKGDAGAPGAPGGKGDAGAP---GERGPPGLA---GAPGLRGGAGPPGPEGGKGAA 710
Query: 161 GLSPKASLLHQDSESRRLPRSNSLGAGGKILSQRPPWSLIHRVLP--DHPWGTLNPSVSW 218
G LG+ G + P +P D P G P
Sbjct: 711 GPPGPPGAAGTPGLQGMPGERGGLGSPGPKGDKGEPGGPGADGVPGKDGPRGPTGPIGPP 770
Query: 219 GGGGPGTGWGTRPMPHPEGIWGINNQPPGTSWGNINRYPGGSWGNINRYPGGSWGNINRY 278
G G G P GI G P G+ P G G +PG N
Sbjct: 771 GPAGQPGDKGEGGAPGLPGIAG----PRGSPGERGETGPPGPAG----FPGAP--GQNGE 820
Query: 279 PGGSWGNIHLYPGINNPFPPGVLRPPGSSWNIPAGFPNP 317
PGG G PPGV PPG S PAG P P
Sbjct: 821 PGGK-GERGAPGEKGEGGPPGVAGPPGGSG--PAGPPGP 856
Score = 30.4 bits (67), Expect = 2.2
Identities = 72/302 (23%), Positives = 90/302 (29%), Gaps = 90/302 (29%)
Query: 48 GQPSSTGPSNSEHPQPALDPRSNDLARVPLKLSVPASDGFPPAGGSAVQRWPPS-WGLPA 106
G P +GP+ PQ R + P P + G P GS PP G P
Sbjct: 843 GPPGGSGPAGPPGPQGVKGERGSPGG--PGAAGFPGARGLPGPPGSNGNPGPPGPSGSPG 900
Query: 107 MDSWPPEDPWQMMAAAAEDRLGEALPEELSYLSSAAALAPGSGPLPGESSPDATGLSPKA 166
D P P + APGS PG S P P
Sbjct: 901 KDG--PPGP------------------------AGNTGAPGS---PGVSGPKGDAGQP-- 929
Query: 167 SLLHQDSESRRLPRSNSLGAGGKILSQRPPWSLIHRVLPDHPWGTLNPSVSWGGGGPGTG 226
G G +Q PP + P G + + G GP
Sbjct: 930 ------------------GEKGSPGAQGPPGA-------PGPLGIAGITGARGLAGPPGM 964
Query: 227 WGTRPMPHPEGIWGINNQPPGTSWGNINRYPG--------GSWGNINR-----------Y 267
G R P P+G+ G + +P PG G+ G R
Sbjct: 965 PGPRGSPGPQGVKGESGKPGANGLSGERGPPGPQGLPGLAGTAGEPGRDGNPGSDGLPGR 1024
Query: 268 PGGSWGNINRYPGGSWGNIHLYPGI-NNPFPPGVLRPPGSSWNI-------PAGFPNPPS 319
G G +R GS G PG +P PPG + P G S + PAG P P
Sbjct: 1025 DGSPGGKGDRGENGSPG----APGAPGHPGPPGPVGPAGKSGDRGESGPAGPAGAPGPAG 1080
Query: 320 PR 321
R
Sbjct: 1081 SR 1082
Score = 29.6 bits (65), Expect = 3.8
Identities = 37/138 (26%), Positives = 49/138 (35%), Gaps = 28/138 (20%)
Query: 203 VLPDHPWGTLNPSVSWGGGGPGTGWGTRPMPHPEGIWGINNQP--PGT------------ 248
V P P P G GP G +P G GI QP PG+
Sbjct: 87 VCPQPPTAPTRPPNGQGPQGPKGDPGPPGIPGRNGDPGIPGQPGSPGSPGPPGICESCPT 146
Query: 249 -------SWGNINRYPGGSWGNINRYPGGSWGNINRYPGGSWGNIHLYPGINNPFPPGVL 301
+ + + G + G + YPG + P G+ G +PG +P PG
Sbjct: 147 GPQNYSPQYDSYDVKSGVAVGGLAGYPGPAGPPGPPGPPGTSG----HPG--SPGSPGYQ 200
Query: 302 RPPGSSWNI-PAGFPNPP 318
PPG P+G P PP
Sbjct: 201 GPPGEPGQAGPSGPPGPP 218
>gi|84570137 homeobox B3 [Homo sapiens]
Length = 431
Score = 36.6 bits (83), Expect = 0.031
Identities = 40/156 (25%), Positives = 57/156 (36%), Gaps = 18/156 (11%)
Query: 111 PPEDPWQ---------MMAAAAEDRLGEALPEELSYLSSAAALAPGSGP-----LPGESS 156
PP+ P+Q +A + LG A P S + + + PG P PG
Sbjct: 32 PPQPPFQAATHLEGDYQRSACSLQSLGNAAPHAKSKELNGSCMRPGLAPEPLSAPPGSPP 91
Query: 157 PDATGLSPKASLLHQDSESRRLPRSNSLGAGGKILSQRPPWSLIHR---VLPDHPWGTLN 213
P A S ++ + S+ P G + Q PW R L ++ GT
Sbjct: 92 PSAAPTSATSNSSNGGGPSKSGPPKCGPGTNSTLTKQIFPWMKESRQTSKLKNNSPGTAE 151
Query: 214 PSVSWGGGGPGTGWGTRPMPHPEGIWGINNQPPGTS 249
GGGG G G G G G + PPG++
Sbjct: 152 GCGGGGGGGGGGGSGGSGGGGGGG-GGGDKSPPGSA 186
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.313 0.137 0.462
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 19,597,675
Number of Sequences: 37866
Number of extensions: 1334881
Number of successful extensions: 5036
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 51
Number of HSP's successfully gapped in prelim test: 325
Number of HSP's that attempted gapping in prelim test: 4415
Number of HSP's gapped (non-prelim): 850
length of query: 325
length of database: 18,247,518
effective HSP length: 102
effective length of query: 223
effective length of database: 14,385,186
effective search space: 3207896478
effective search space used: 3207896478
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 62 (28.5 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.