Search of human proteins with 11641289

Search of human proteins with 11641289

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|11641289 transcription factor B2, mitochondrial [Homo
sapiens]
         (396 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|11641289 transcription factor B2, mitochondrial [Homo sapiens]     815   0.0  
gi|156415992 transcription factor B1, mitochondrial [Homo sapiens]     56   6e-08
gi|7657198 dimethyladenosine transferase [Homo sapiens]                40   0.005
gi|155030234 ribonuclease III, nuclear isoform 1 [Homo sapiens]        35   0.12 
gi|155030236 ribonuclease III, nuclear isoform 2 [Homo sapiens]        33   0.34 
gi|239754327 PREDICTED: chromosome 6 open reading frame 132 [Hom...    33   0.59 
gi|239748855 PREDICTED: chromosome 6 open reading frame 132 [Hom...    33   0.59 
gi|239742884 PREDICTED: hypothetical protein LOC647024 [Homo sap...    33   0.59 
gi|148886752 immunoglobulin superfamily, member 9B [Homo sapiens]      32   1.0  
gi|82659109 retinoblastoma-associated factor 600 [Homo sapiens]        30   5.0  
gi|193082993 GTP binding protein 3 (mitochondrial) isoform III [...    29   6.5  
gi|193082991 GTP binding protein 3 (mitochondrial) isoform V [Ho...    29   6.5  
gi|193082988 GTP binding protein 3 (mitochondrial) isoform IV [H...    29   6.5  
gi|34304381 inversin isoform a [Homo sapiens]                          29   6.5  
gi|34304379 inversin isoform b [Homo sapiens]                          29   6.5  
gi|4507947 tyrosyl-tRNA synthetase [Homo sapiens]                      29   8.5  
gi|4559408 colony stimulating factor 2 receptor, beta precursor ...    29   8.5  

>gi|11641289 transcription factor B2, mitochondrial [Homo sapiens]
          Length = 396

 Score =  815 bits (2106), Expect = 0.0
 Identities = 396/396 (100%), Positives = 396/396 (100%)

Query: 1   MWIPVVGLPRRLRLSALAGAGRFCILGSEAATRKHLPARNHCGLSDSSPQLWPEPDFRNP 60
           MWIPVVGLPRRLRLSALAGAGRFCILGSEAATRKHLPARNHCGLSDSSPQLWPEPDFRNP
Sbjct: 1   MWIPVVGLPRRLRLSALAGAGRFCILGSEAATRKHLPARNHCGLSDSSPQLWPEPDFRNP 60

Query: 61  PRKASKASLDFKRYVTDRRLAETLAQIYLGKPSRPPHLLLECNPGPGILTQALLEAGAKV 120
           PRKASKASLDFKRYVTDRRLAETLAQIYLGKPSRPPHLLLECNPGPGILTQALLEAGAKV
Sbjct: 61  PRKASKASLDFKRYVTDRRLAETLAQIYLGKPSRPPHLLLECNPGPGILTQALLEAGAKV 120

Query: 121 VALESDKTFIPHLESLGKNLDGKLRVIHCDFFKLDPRSGGVIKPPAMSSRGLFKNLGIEA 180
           VALESDKTFIPHLESLGKNLDGKLRVIHCDFFKLDPRSGGVIKPPAMSSRGLFKNLGIEA
Sbjct: 121 VALESDKTFIPHLESLGKNLDGKLRVIHCDFFKLDPRSGGVIKPPAMSSRGLFKNLGIEA 180

Query: 181 VPWTADIPLKVVGMFPSRGEKRALWKLAYDLYSCTSIYKFGRIEVNMFIGEKEFQKLMAD 240
           VPWTADIPLKVVGMFPSRGEKRALWKLAYDLYSCTSIYKFGRIEVNMFIGEKEFQKLMAD
Sbjct: 181 VPWTADIPLKVVGMFPSRGEKRALWKLAYDLYSCTSIYKFGRIEVNMFIGEKEFQKLMAD 240

Query: 241 PGNPDLYHVLSVIWQLACEIKVLHMEPWSSFDIYTRKGPLENPKRRELLDQLQQKLYLIQ 300
           PGNPDLYHVLSVIWQLACEIKVLHMEPWSSFDIYTRKGPLENPKRRELLDQLQQKLYLIQ
Sbjct: 241 PGNPDLYHVLSVIWQLACEIKVLHMEPWSSFDIYTRKGPLENPKRRELLDQLQQKLYLIQ 300

Query: 301 MIPRQNLFTKNLTPMNYNIFFHLLKHCFGRRSATVIDHLRSLTPLDARDILMQIGKQEDE 360
           MIPRQNLFTKNLTPMNYNIFFHLLKHCFGRRSATVIDHLRSLTPLDARDILMQIGKQEDE
Sbjct: 301 MIPRQNLFTKNLTPMNYNIFFHLLKHCFGRRSATVIDHLRSLTPLDARDILMQIGKQEDE 360

Query: 361 KVVNMHPQDFKTLFETIERSKDCAYKWLYDETLEDR 396
           KVVNMHPQDFKTLFETIERSKDCAYKWLYDETLEDR
Sbjct: 361 KVVNMHPQDFKTLFETIERSKDCAYKWLYDETLEDR 396


>gi|156415992 transcription factor B1, mitochondrial [Homo sapiens]
          Length = 346

 Score = 55.8 bits (133), Expect = 6e-08
 Identities = 44/175 (25%), Positives = 80/175 (45%), Gaps = 22/175 (12%)

Query: 101 ECNPGPGILTQALLEAG-AKVVALESDKTFIPHLESLGKNLDGKLRVIHCDF--FKLDPR 157
           E  PGPG +T+++L A  A+++ +E D  FIP L+ L     GKLR++H D   FK++  
Sbjct: 61  EVGPGPGGITRSILNADVAELLVVEKDTRFIPGLQMLSDAAPGKLRIVHGDVLTFKVEKA 120

Query: 158 SGGVIKPPAMSSRGLFKNLGIEAVPWTADIP-LKVVGMFPSRGEKRALWKLAYDLYSCTS 216
               +K                  PW  D P + ++G  P       + K   ++     
Sbjct: 121 FSESLKR-----------------PWEDDPPNVHIIGNLPFSVSTPLIIKWLENISCRDG 163

Query: 217 IYKFGRIEVNMFIGEKEFQKLMADPGNPDLYHVLSVIWQLACEIKVLHMEPWSSF 271
            + +GR ++ +   ++  ++L A+ G+      LSV+ Q  C ++ +   P  +F
Sbjct: 164 PFVYGRTQMTLTFQKEVAERLAANTGSKQRSR-LSVMAQYLCNVRHIFTIPGQAF 217


>gi|7657198 dimethyladenosine transferase [Homo sapiens]
          Length = 313

 Score = 39.7 bits (91), Expect = 0.005
 Identities = 25/64 (39%), Positives = 32/64 (50%), Gaps = 2/64 (3%)

Query: 94  RPPHLLLECNPGPGILTQALLEAGAKVVALESDKTFIP--HLESLGKNLDGKLRVIHCDF 151
           RP  ++LE  PG G +T  LLE   KVVA E D   +   H    G  +  KL+V+  D 
Sbjct: 55  RPTDVVLEVGPGTGNMTVKLLEKAKKVVACELDPRLVAELHKRVQGTPVASKLQVLVGDV 114

Query: 152 FKLD 155
            K D
Sbjct: 115 LKTD 118


>gi|155030234 ribonuclease III, nuclear isoform 1 [Homo sapiens]
          Length = 1374

 Score = 35.0 bits (79), Expect = 0.12
 Identities = 31/113 (27%), Positives = 53/113 (46%), Gaps = 11/113 (9%)

Query: 188 PLKVVG-MFPSRGEKRALWKLAYDLYSCTSIYKFGRIEVNMFIGEKEFQKLMADPGNPDL 246
           PL++V    PSR +KRA W+   D +S       G+ +    I EKE ++ M D    + 
Sbjct: 347 PLEIVNHRSPSREKKRARWEEEKDRWSDNQ--SSGKDKNYTSIKEKEPEETMPDKNEEEE 404

Query: 247 YHVLSVIWQLACEIKVLHMEPWSSFDIYTRKGP---LENPKRRELLDQLQQKL 296
             +L  +W     I+  H E + S D   + G    +   + R+L D+ +++L
Sbjct: 405 EELLKPVW-----IRCTHSENYYSSDPMDQVGDSTVVGTSRLRDLYDKFEEEL 452


>gi|155030236 ribonuclease III, nuclear isoform 2 [Homo sapiens]
          Length = 1337

 Score = 33.5 bits (75), Expect = 0.34
 Identities = 28/104 (26%), Positives = 48/104 (46%), Gaps = 10/104 (9%)

Query: 196 PSRGEKRALWKLAYDLYSCTSIYKFGRIEVNMFIGEKEFQKLMADPGNPDLYHVLSVIWQ 255
           PSR +KRA W+   D +S       G+ +    I EKE ++ M D    +   +L  +W 
Sbjct: 319 PSREKKRARWEEEKDRWSDNQ--SSGKDKNYTSIKEKEPEETMPDKNEEEEEELLKPVW- 375

Query: 256 LACEIKVLHMEPWSSFDIYTRKGP---LENPKRRELLDQLQQKL 296
               I+  H E + S D   + G    +   + R+L D+ +++L
Sbjct: 376 ----IRCTHSENYYSSDPMDQVGDSTVVGTSRLRDLYDKFEEEL 415


>gi|239754327 PREDICTED: chromosome 6 open reading frame 132 [Homo
           sapiens]
          Length = 1188

 Score = 32.7 bits (73), Expect = 0.59
 Identities = 29/96 (30%), Positives = 41/96 (42%), Gaps = 4/96 (4%)

Query: 35  HLPARNHCGLSDSSPQLWPEPDFRNPPRKASKASLDFKRYVTDRRLAETLAQIYLGKPSR 94
           H PA        SSP L P+P+  +P   AS A +D++      +L   LA    G  SR
Sbjct: 425 HPPAGFTKTPKSSSPALKPKPNPPSPENTASSAPVDWRDPSQMEKLRNELAAYLCG--SR 482

Query: 95  PPHLLLECNPGPGILTQALLEAGAKVVALESDKTFI 130
                L   PGP +  Q+  + G K   L   +T +
Sbjct: 483 REDRFLSHRPGPTVAPQS--KEGKKGPRLPEKETLL 516


>gi|239748855 PREDICTED: chromosome 6 open reading frame 132 [Homo
           sapiens]
          Length = 1188

 Score = 32.7 bits (73), Expect = 0.59
 Identities = 29/96 (30%), Positives = 41/96 (42%), Gaps = 4/96 (4%)

Query: 35  HLPARNHCGLSDSSPQLWPEPDFRNPPRKASKASLDFKRYVTDRRLAETLAQIYLGKPSR 94
           H PA        SSP L P+P+  +P   AS A +D++      +L   LA    G  SR
Sbjct: 425 HPPAGFTKTPKSSSPALKPKPNPPSPENTASSAPVDWRDPSQMEKLRNELAAYLCG--SR 482

Query: 95  PPHLLLECNPGPGILTQALLEAGAKVVALESDKTFI 130
                L   PGP +  Q+  + G K   L   +T +
Sbjct: 483 REDRFLSHRPGPTVAPQS--KEGKKGPRLPEKETLL 516


>gi|239742884 PREDICTED: hypothetical protein LOC647024 [Homo
           sapiens]
          Length = 1188

 Score = 32.7 bits (73), Expect = 0.59
 Identities = 29/96 (30%), Positives = 41/96 (42%), Gaps = 4/96 (4%)

Query: 35  HLPARNHCGLSDSSPQLWPEPDFRNPPRKASKASLDFKRYVTDRRLAETLAQIYLGKPSR 94
           H PA        SSP L P+P+  +P   AS A +D++      +L   LA    G  SR
Sbjct: 425 HPPAGFTKTPKSSSPALKPKPNPPSPENTASSAPVDWRDPSQMEKLRNELAAYLCG--SR 482

Query: 95  PPHLLLECNPGPGILTQALLEAGAKVVALESDKTFI 130
                L   PGP +  Q+  + G K   L   +T +
Sbjct: 483 REDRFLSHRPGPTVAPQS--KEGKKGPRLPEKETLL 516


>gi|148886752 immunoglobulin superfamily, member 9B [Homo sapiens]
          Length = 1349

 Score = 32.0 bits (71), Expect = 1.0
 Identities = 19/60 (31%), Positives = 25/60 (41%)

Query: 53   PEPDFRNPPRKASKASLDFKRYVTDRRLAETLAQIYLGKPSRPPHLLLECNPGPGILTQA 112
            P+P  R  PR+A +A     + V        L Q  L   +  P L     P PG+L QA
Sbjct: 1173 PQPRPRPSPRQARRAEPSLHQVVLQPSRLSPLTQSPLSSRTGSPELAARARPRPGLLQQA 1232


>gi|82659109 retinoblastoma-associated factor 600 [Homo sapiens]
          Length = 5183

 Score = 29.6 bits (65), Expect = 5.0
 Identities = 20/71 (28%), Positives = 35/71 (49%), Gaps = 8/71 (11%)

Query: 232  KEFQKLMADPGNPDLYHVLSVIWQLACEIKVLHMEPWSSFDIYTRKGPLENPKRRELLDQ 291
            K FQ     P NP L H+   + QLAC ++ + ++ W +      +     PK  + LD 
Sbjct: 1433 KLFQLTEKSP-NPSLLHLCGSLAQLAC-VEPVRLQAWLT------RMTTSPPKDSDQLDV 1484

Query: 292  LQQKLYLIQMI 302
            +Q+   L+Q++
Sbjct: 1485 IQENRQLLQLL 1495


>gi|193082993 GTP binding protein 3 (mitochondrial) isoform III
           [Homo sapiens]
          Length = 471

 Score = 29.3 bits (64), Expect = 6.5
 Identities = 16/31 (51%), Positives = 18/31 (58%), Gaps = 2/31 (6%)

Query: 92  PSRPPHLLLECNPGPGILTQALLEAGAKVVA 122
           P  PPHLLL C  G G+    LLEA  K +A
Sbjct: 367 PDLPPHLLLSCLTGEGL--DGLLEALRKELA 395


>gi|193082991 GTP binding protein 3 (mitochondrial) isoform V [Homo
           sapiens]
          Length = 492

 Score = 29.3 bits (64), Expect = 6.5
 Identities = 16/31 (51%), Positives = 18/31 (58%), Gaps = 2/31 (6%)

Query: 92  PSRPPHLLLECNPGPGILTQALLEAGAKVVA 122
           P  PPHLLL C  G G+    LLEA  K +A
Sbjct: 388 PDLPPHLLLSCLTGEGL--DGLLEALRKELA 416


>gi|193082988 GTP binding protein 3 (mitochondrial) isoform IV [Homo
           sapiens]
          Length = 524

 Score = 29.3 bits (64), Expect = 6.5
 Identities = 16/31 (51%), Positives = 18/31 (58%), Gaps = 2/31 (6%)

Query: 92  PSRPPHLLLECNPGPGILTQALLEAGAKVVA 122
           P  PPHLLL C  G G+    LLEA  K +A
Sbjct: 420 PDLPPHLLLSCLTGEGL--DGLLEALRKELA 448


>gi|34304381 inversin isoform a [Homo sapiens]
          Length = 1065

 Score = 29.3 bits (64), Expect = 6.5
 Identities = 19/66 (28%), Positives = 30/66 (45%)

Query: 76  TDRRLAETLAQIYLGKPSRPPHLLLECNPGPGILTQALLEAGAKVVALESDKTFIPHLES 135
           T + L E  AQ+      +   L   C  G   + Q L++ GA+V  ++ D   + H  +
Sbjct: 372 TVKLLLENNAQVDATDVMKHTPLFRACEMGHKDVIQTLIKGGARVDLVDQDGHSLLHWAA 431

Query: 136 LGKNLD 141
           LG N D
Sbjct: 432 LGGNAD 437


>gi|34304379 inversin isoform b [Homo sapiens]
          Length = 895

 Score = 29.3 bits (64), Expect = 6.5
 Identities = 19/66 (28%), Positives = 30/66 (45%)

Query: 76  TDRRLAETLAQIYLGKPSRPPHLLLECNPGPGILTQALLEAGAKVVALESDKTFIPHLES 135
           T + L E  AQ+      +   L   C  G   + Q L++ GA+V  ++ D   + H  +
Sbjct: 372 TVKLLLENNAQVDATDVMKHTPLFRACEMGHKDVIQTLIKGGARVDLVDQDGHSLLHWAA 431

Query: 136 LGKNLD 141
           LG N D
Sbjct: 432 LGGNAD 437


>gi|4507947 tyrosyl-tRNA synthetase [Homo sapiens]
          Length = 528

 Score = 28.9 bits (63), Expect = 8.5
 Identities = 19/63 (30%), Positives = 29/63 (46%), Gaps = 4/63 (6%)

Query: 231 EKEFQKLMADPGNPDLYHVLS----VIWQLACEIKVLHMEPWSSFDIYTRKGPLENPKRR 286
           +K+ +K   +PGN +   VLS    V++ L  E  +L  E W     YT    LE     
Sbjct: 242 KKKLKKAFCEPGNVENNGVLSFIKHVLFPLKSEFVILRDEKWGGNKTYTAYVDLEKDFAA 301

Query: 287 ELL 289
           E++
Sbjct: 302 EVV 304


>gi|4559408 colony stimulating factor 2 receptor, beta precursor
           [Homo sapiens]
          Length = 897

 Score = 28.9 bits (63), Expect = 8.5
 Identities = 34/123 (27%), Positives = 49/123 (39%), Gaps = 8/123 (6%)

Query: 48  SPQLWPEPDFRNPPRKASKASLDFKRYVTDRRLAETLAQIYLGKPSRPPHLLLECNPGPG 107
           SPQ  P      P ++AS  S DF         + +L  I LG+P  P     + +P PG
Sbjct: 568 SPQPGPPAASHTPEKQAS--SFDFNGPYLGPPHSRSLPDI-LGQPEPPQEGGSQKSPPPG 624

Query: 108 ILTQALLEAGAKVVALESDKTFIPHLESLGKNLDGKLRVIHCDFFKLDPRSGGVIKPPAM 167
            L    L AG +V  +   +   P     G+ ++ + R            SGG   PPA+
Sbjct: 625 SLEYLCLPAGGQVQLVPLAQAMGP-----GQAVEVERRPSQGAAGSPSLESGGGPAPPAL 679

Query: 168 SSR 170
             R
Sbjct: 680 GPR 682


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.323    0.140    0.436 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,439,767
Number of Sequences: 37866
Number of extensions: 770174
Number of successful extensions: 1633
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 1625
Number of HSP's gapped (non-prelim): 18
length of query: 396
length of database: 18,247,518
effective HSP length: 104
effective length of query: 292
effective length of database: 14,309,454
effective search space: 4178360568
effective search space used: 4178360568
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 63 (28.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.