Guide to the Human Genome
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Name: TFB2M Sequence: fasta or formatted (396aa) NCBI GI: 11641289
Description:

transcription factor B2, mitochondrial

Referenced in:

Mitochondria

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.1         24           2
 C cysteine            2.0          8           1
 D aspartate           5.6         22           1
 E glutamate           5.6         22           1
 F phenylalanine       4.5         18           2
 G glycine             5.8         23           2
 H histidine           2.8         11           1
 I isoleucine          5.6         22           1
 K lysine              7.3         29           1
 L leucine            13.1         52           3
 M methionine          2.5         10           1
 N asparagine          3.3         13           1
 P proline             7.3         29           2
 Q glutamine           3.3         13           2
 R arginine            7.1         28           2
 S serine              5.6         22           2
 T threonine           3.8         15           1
 V valine              4.3         17           2
 W tryptophan          1.8          7           1
 Y tyrosine            2.8         11           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   transcription factor B2, mitochondrial 
TFB1M                 0.039   transcription factor B1, mitochondrial 
DIMT1L                0.019   dimethyladenosine transferase 
RNASEN                0.013   ribonuclease III, nuclear isoform 1 
RNASEN                0.010   ribonuclease III, nuclear isoform 2 
C6orf132              0.010   PREDICTED: chromosome 6 open reading frame 132 [Hom...
C6orf132              0.010   PREDICTED: chromosome 6 open reading frame 132 [Hom...
C6orf132              0.010   PREDICTED: hypothetical protein LOC647024 
IGSF9B                0.009   immunoglobulin superfamily, member 9B 
UBR4                  0.006   retinoblastoma-associated factor 600 
GTPBP3                0.005   GTP binding protein 3 (mitochondrial) isoform III [...
GTPBP3                0.005   GTP binding protein 3 (mitochondrial) isoform V [Ho...
GTPBP3                0.005   GTP binding protein 3 (mitochondrial) isoform IV [H...
INVS                  0.005   inversin isoform a 
INVS                  0.005   inversin isoform b 
YARS                  0.005   tyrosyl-tRNA synthetase 
CSF2RB                0.005   colony stimulating factor 2 receptor, beta precursor ...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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