Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Search of human proteins with 239744311

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|239744311 PREDICTED: doublecortin domain containing 5 [Homo
sapiens]
         (1020 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|239755534 PREDICTED: doublecortin domain containing 5 [Homo s...  2063   0.0  
gi|239750000 PREDICTED: doublecortin domain containing 5 [Homo s...  2063   0.0  
gi|239744311 PREDICTED: doublecortin domain containing 5 [Homo s...  2063   0.0  
gi|153791347 doublecortin domain containing 1 [Homo sapiens]           44   8e-04
gi|51173727 Sma- and Mad-related protein 1 [Homo sapiens]              35   0.36 
gi|5174509 Sma- and Mad-related protein 1 [Homo sapiens]               35   0.36 
gi|21618331 carnitine acetyltransferase precursor [Homo sapiens]       33   1.8  
gi|148746218 TAO kinase 3 [Homo sapiens]                               32   2.3  
gi|239753110 PREDICTED: doublecortin domain-containing protein E...    32   3.0  
gi|239747673 PREDICTED: doublecortin domain-containing protein E...    32   3.0  
gi|239741542 PREDICTED: doublecortin domain-containing protein E...    32   3.0  
gi|153085395 histone deacetylase 4 [Homo sapiens]                      32   4.0  
gi|20986488 YY1-associated protein isoform 2 [Homo sapiens]            31   5.2  
gi|20986490 YY1-associated protein isoform 3 [Homo sapiens]            31   5.2  
gi|47778931 SMAD, mothers against DPP homolog 5 [Homo sapiens]         31   6.8  
gi|47778929 SMAD, mothers against DPP homolog 5 [Homo sapiens]         31   6.8  
gi|47778925 SMAD, mothers against DPP homolog 5 [Homo sapiens]         31   6.8  
gi|4758128 doublecortin-like kinase 1 [Homo sapiens]                   31   6.8  
gi|46358428 selective LIM binding factor homolog [Homo sapiens]        30   8.9  
gi|110347455 Brn3b POU domain transcription factor [Homo sapiens]      30   8.9  
gi|85986587 MAS-related GPR, member E [Homo sapiens]                   30   8.9  
gi|38016202 SATB homeobox 2 [Homo sapiens]                             30   8.9  

>gi|239755534 PREDICTED: doublecortin domain containing 5 [Homo
            sapiens]
          Length = 1020

 Score = 2063 bits (5345), Expect = 0.0
 Identities = 1020/1020 (100%), Positives = 1020/1020 (100%)

Query: 1    MKKPICKTTEPYAPVRLRVLQNGEKNKNRSVTILGPDISPGRKTQACPVLVWEGRGLWEW 60
            MKKPICKTTEPYAPVRLRVLQNGEKNKNRSVTILGPDISPGRKTQACPVLVWEGRGLWEW
Sbjct: 1    MKKPICKTTEPYAPVRLRVLQNGEKNKNRSVTILGPDISPGRKTQACPVLVWEGRGLWEW 60

Query: 61   EISVQCLTRLKTSVSKVVETDYPLVEGAEELGDKLDFDNLGERTRLHQKKPRKNFFRCTE 120
            EISVQCLTRLKTSVSKVVETDYPLVEGAEELGDKLDFDNLGERTRLHQKKPRKNFFRCTE
Sbjct: 61   EISVQCLTRLKTSVSKVVETDYPLVEGAEELGDKLDFDNLGERTRLHQKKPRKNFFRCTE 120

Query: 121  ILNLPSAARRLYNEKGKEIFALKDLQRDELVYVSCGELWINPDLSIAQQKKQIFLRNLES 180
            ILNLPSAARRLYNEKGKEIFALKDLQRDELVYVSCGELWINPDLSIAQQKKQIFLRNLES
Sbjct: 121  ILNLPSAARRLYNEKGKEIFALKDLQRDELVYVSCGELWINPDLSIAQQKKQIFLRNLES 180

Query: 181  DIAKIQIFCSTHKIEVLATEPPHPCLASTFGKLPKKILSNSWVLAAPPRNQIPVHVAGCA 240
            DIAKIQIFCSTHKIEVLATEPPHPCLASTFGKLPKKILSNSWVLAAPPRNQIPVHVAGCA
Sbjct: 181  DIAKIQIFCSTHKIEVLATEPPHPCLASTFGKLPKKILSNSWVLAAPPRNQIPVHVAGCA 240

Query: 241  SDWSSKEVQSDIVSGSKLAVHKPVAIFGEEKQVTEPEEKQMQEDPLTTENASSEILDSHV 300
            SDWSSKEVQSDIVSGSKLAVHKPVAIFGEEKQVTEPEEKQMQEDPLTTENASSEILDSHV
Sbjct: 241  SDWSSKEVQSDIVSGSKLAVHKPVAIFGEEKQVTEPEEKQMQEDPLTTENASSEILDSHV 300

Query: 301  RAHLRMKACHTLPRYAWQETSHDFDEDDSLPKKTEKGLFENVEPQKKHSCSPKHSKLHKH 360
            RAHLRMKACHTLPRYAWQETSHDFDEDDSLPKKTEKGLFENVEPQKKHSCSPKHSKLHKH
Sbjct: 301  RAHLRMKACHTLPRYAWQETSHDFDEDDSLPKKTEKGLFENVEPQKKHSCSPKHSKLHKH 360

Query: 361  CHQQFEYRDGQIISHAAPQLVLGVQGPNLRSGMEVVLVEKKSDGSHQRWIHQEDSRTFCT 420
            CHQQFEYRDGQIISHAAPQLVLGVQGPNLRSGMEVVLVEKKSDGSHQRWIHQEDSRTFCT
Sbjct: 361  CHQQFEYRDGQIISHAAPQLVLGVQGPNLRSGMEVVLVEKKSDGSHQRWIHQEDSRTFCT 420

Query: 421  FVILGAPHVKTRKREAVSGREMVILVDPSLETSESREKRTFHLVSNPDLVLAVSMTKTRN 480
            FVILGAPHVKTRKREAVSGREMVILVDPSLETSESREKRTFHLVSNPDLVLAVSMTKTRN
Sbjct: 421  FVILGAPHVKTRKREAVSGREMVILVDPSLETSESREKRTFHLVSNPDLVLAVSMTKTRN 480

Query: 481  EVCGYPVIVQKYKPYNNGAANQKWHYMKNIKALVAFHSTALDKEITSANYAGVCTSSVIK 540
            EVCGYPVIVQKYKPYNNGAANQKWHYMKNIKALVAFHSTALDKEITSANYAGVCTSSVIK
Sbjct: 481  EVCGYPVIVQKYKPYNNGAANQKWHYMKNIKALVAFHSTALDKEITSANYAGVCTSSVIK 540

Query: 541  EENIDQPGYCYLSPDGKRKTMLCLACGQSMRTEKGLKQLLPGVPFLCISGTKTQKPFLQG 600
            EENIDQPGYCYLSPDGKRKTMLCLACGQSMRTEKGLKQLLPGVPFLCISGTKTQKPFLQG
Sbjct: 541  EENIDQPGYCYLSPDGKRKTMLCLACGQSMRTEKGLKQLLPGVPFLCISGTKTQKPFLQG 600

Query: 601  PFKVISVAEAEKTLSYYQARLLSLRMKTCTQAASHSGMAATHQKAVKIIAYKNGDGYRNG 660
            PFKVISVAEAEKTLSYYQARLLSLRMKTCTQAASHSGMAATHQKAVKIIAYKNGDGYRNG
Sbjct: 601  PFKVISVAEAEKTLSYYQARLLSLRMKTCTQAASHSGMAATHQKAVKIIAYKNGDGYRNG 660

Query: 661  KLIVAGTFPMLLTECTEQLGLARAASKVYTKDGTPIFTLRDLVLWALDESFLQRDSEKQK 720
            KLIVAGTFPMLLTECTEQLGLARAASKVYTKDGTPIFTLRDLVLWALDESFLQRDSEKQK
Sbjct: 661  KLIVAGTFPMLLTECTEQLGLARAASKVYTKDGTPIFTLRDLVLWALDESFLQRDSEKQK 720

Query: 721  QDAAPVGKEQIIVESMEENPRMKVKNRLFAKSVTSDSLDGIDKSLLTLILRNPIAIWVSC 780
            QDAAPVGKEQIIVESMEENPRMKVKNRLFAKSVTSDSLDGIDKSLLTLILRNPIAIWVSC
Sbjct: 721  QDAAPVGKEQIIVESMEENPRMKVKNRLFAKSVTSDSLDGIDKSLLTLILRNPIAIWVSC 780

Query: 781  GEPFLPPNALQKAEKLEKQNWLKKDRILADLDTMRHKMRQLKGRRVAACQPATMVPTKSP 840
            GEPFLPPNALQKAEKLEKQNWLKKDRILADLDTMRHKMRQLKGRRVAACQPATMVPTKSP
Sbjct: 781  GEPFLPPNALQKAEKLEKQNWLKKDRILADLDTMRHKMRQLKGRRVAACQPATMVPTKSP 840

Query: 841  VQPVVVEGGWTEQTQQEIKLMELIRHTEAHLSEIQEMESKINFPIATKRIAVKPSNLYKQ 900
            VQPVVVEGGWTEQTQQEIKLMELIRHTEAHLSEIQEMESKINFPIATKRIAVKPSNLYKQ
Sbjct: 841  VQPVVVEGGWTEQTQQEIKLMELIRHTEAHLSEIQEMESKINFPIATKRIAVKPSNLYKQ 900

Query: 901  PNTKRVWIYLNGGRPEDGTYAWGKTISELLQDCSSRLKMTHPARALYTPSGEPIQSWDDI 960
            PNTKRVWIYLNGGRPEDGTYAWGKTISELLQDCSSRLKMTHPARALYTPSGEPIQSWDDI
Sbjct: 901  PNTKRVWIYLNGGRPEDGTYAWGKTISELLQDCSSRLKMTHPARALYTPSGEPIQSWDDI 960

Query: 961  ERDMVICVSMGHGFKTPKELKQLMEIRANYARIRRQQGPQATDIVVSPSTKLLSLAHLHN 1020
            ERDMVICVSMGHGFKTPKELKQLMEIRANYARIRRQQGPQATDIVVSPSTKLLSLAHLHN
Sbjct: 961  ERDMVICVSMGHGFKTPKELKQLMEIRANYARIRRQQGPQATDIVVSPSTKLLSLAHLHN 1020


>gi|239750000 PREDICTED: doublecortin domain containing 5 [Homo
            sapiens]
          Length = 1020

 Score = 2063 bits (5345), Expect = 0.0
 Identities = 1020/1020 (100%), Positives = 1020/1020 (100%)

Query: 1    MKKPICKTTEPYAPVRLRVLQNGEKNKNRSVTILGPDISPGRKTQACPVLVWEGRGLWEW 60
            MKKPICKTTEPYAPVRLRVLQNGEKNKNRSVTILGPDISPGRKTQACPVLVWEGRGLWEW
Sbjct: 1    MKKPICKTTEPYAPVRLRVLQNGEKNKNRSVTILGPDISPGRKTQACPVLVWEGRGLWEW 60

Query: 61   EISVQCLTRLKTSVSKVVETDYPLVEGAEELGDKLDFDNLGERTRLHQKKPRKNFFRCTE 120
            EISVQCLTRLKTSVSKVVETDYPLVEGAEELGDKLDFDNLGERTRLHQKKPRKNFFRCTE
Sbjct: 61   EISVQCLTRLKTSVSKVVETDYPLVEGAEELGDKLDFDNLGERTRLHQKKPRKNFFRCTE 120

Query: 121  ILNLPSAARRLYNEKGKEIFALKDLQRDELVYVSCGELWINPDLSIAQQKKQIFLRNLES 180
            ILNLPSAARRLYNEKGKEIFALKDLQRDELVYVSCGELWINPDLSIAQQKKQIFLRNLES
Sbjct: 121  ILNLPSAARRLYNEKGKEIFALKDLQRDELVYVSCGELWINPDLSIAQQKKQIFLRNLES 180

Query: 181  DIAKIQIFCSTHKIEVLATEPPHPCLASTFGKLPKKILSNSWVLAAPPRNQIPVHVAGCA 240
            DIAKIQIFCSTHKIEVLATEPPHPCLASTFGKLPKKILSNSWVLAAPPRNQIPVHVAGCA
Sbjct: 181  DIAKIQIFCSTHKIEVLATEPPHPCLASTFGKLPKKILSNSWVLAAPPRNQIPVHVAGCA 240

Query: 241  SDWSSKEVQSDIVSGSKLAVHKPVAIFGEEKQVTEPEEKQMQEDPLTTENASSEILDSHV 300
            SDWSSKEVQSDIVSGSKLAVHKPVAIFGEEKQVTEPEEKQMQEDPLTTENASSEILDSHV
Sbjct: 241  SDWSSKEVQSDIVSGSKLAVHKPVAIFGEEKQVTEPEEKQMQEDPLTTENASSEILDSHV 300

Query: 301  RAHLRMKACHTLPRYAWQETSHDFDEDDSLPKKTEKGLFENVEPQKKHSCSPKHSKLHKH 360
            RAHLRMKACHTLPRYAWQETSHDFDEDDSLPKKTEKGLFENVEPQKKHSCSPKHSKLHKH
Sbjct: 301  RAHLRMKACHTLPRYAWQETSHDFDEDDSLPKKTEKGLFENVEPQKKHSCSPKHSKLHKH 360

Query: 361  CHQQFEYRDGQIISHAAPQLVLGVQGPNLRSGMEVVLVEKKSDGSHQRWIHQEDSRTFCT 420
            CHQQFEYRDGQIISHAAPQLVLGVQGPNLRSGMEVVLVEKKSDGSHQRWIHQEDSRTFCT
Sbjct: 361  CHQQFEYRDGQIISHAAPQLVLGVQGPNLRSGMEVVLVEKKSDGSHQRWIHQEDSRTFCT 420

Query: 421  FVILGAPHVKTRKREAVSGREMVILVDPSLETSESREKRTFHLVSNPDLVLAVSMTKTRN 480
            FVILGAPHVKTRKREAVSGREMVILVDPSLETSESREKRTFHLVSNPDLVLAVSMTKTRN
Sbjct: 421  FVILGAPHVKTRKREAVSGREMVILVDPSLETSESREKRTFHLVSNPDLVLAVSMTKTRN 480

Query: 481  EVCGYPVIVQKYKPYNNGAANQKWHYMKNIKALVAFHSTALDKEITSANYAGVCTSSVIK 540
            EVCGYPVIVQKYKPYNNGAANQKWHYMKNIKALVAFHSTALDKEITSANYAGVCTSSVIK
Sbjct: 481  EVCGYPVIVQKYKPYNNGAANQKWHYMKNIKALVAFHSTALDKEITSANYAGVCTSSVIK 540

Query: 541  EENIDQPGYCYLSPDGKRKTMLCLACGQSMRTEKGLKQLLPGVPFLCISGTKTQKPFLQG 600
            EENIDQPGYCYLSPDGKRKTMLCLACGQSMRTEKGLKQLLPGVPFLCISGTKTQKPFLQG
Sbjct: 541  EENIDQPGYCYLSPDGKRKTMLCLACGQSMRTEKGLKQLLPGVPFLCISGTKTQKPFLQG 600

Query: 601  PFKVISVAEAEKTLSYYQARLLSLRMKTCTQAASHSGMAATHQKAVKIIAYKNGDGYRNG 660
            PFKVISVAEAEKTLSYYQARLLSLRMKTCTQAASHSGMAATHQKAVKIIAYKNGDGYRNG
Sbjct: 601  PFKVISVAEAEKTLSYYQARLLSLRMKTCTQAASHSGMAATHQKAVKIIAYKNGDGYRNG 660

Query: 661  KLIVAGTFPMLLTECTEQLGLARAASKVYTKDGTPIFTLRDLVLWALDESFLQRDSEKQK 720
            KLIVAGTFPMLLTECTEQLGLARAASKVYTKDGTPIFTLRDLVLWALDESFLQRDSEKQK
Sbjct: 661  KLIVAGTFPMLLTECTEQLGLARAASKVYTKDGTPIFTLRDLVLWALDESFLQRDSEKQK 720

Query: 721  QDAAPVGKEQIIVESMEENPRMKVKNRLFAKSVTSDSLDGIDKSLLTLILRNPIAIWVSC 780
            QDAAPVGKEQIIVESMEENPRMKVKNRLFAKSVTSDSLDGIDKSLLTLILRNPIAIWVSC
Sbjct: 721  QDAAPVGKEQIIVESMEENPRMKVKNRLFAKSVTSDSLDGIDKSLLTLILRNPIAIWVSC 780

Query: 781  GEPFLPPNALQKAEKLEKQNWLKKDRILADLDTMRHKMRQLKGRRVAACQPATMVPTKSP 840
            GEPFLPPNALQKAEKLEKQNWLKKDRILADLDTMRHKMRQLKGRRVAACQPATMVPTKSP
Sbjct: 781  GEPFLPPNALQKAEKLEKQNWLKKDRILADLDTMRHKMRQLKGRRVAACQPATMVPTKSP 840

Query: 841  VQPVVVEGGWTEQTQQEIKLMELIRHTEAHLSEIQEMESKINFPIATKRIAVKPSNLYKQ 900
            VQPVVVEGGWTEQTQQEIKLMELIRHTEAHLSEIQEMESKINFPIATKRIAVKPSNLYKQ
Sbjct: 841  VQPVVVEGGWTEQTQQEIKLMELIRHTEAHLSEIQEMESKINFPIATKRIAVKPSNLYKQ 900

Query: 901  PNTKRVWIYLNGGRPEDGTYAWGKTISELLQDCSSRLKMTHPARALYTPSGEPIQSWDDI 960
            PNTKRVWIYLNGGRPEDGTYAWGKTISELLQDCSSRLKMTHPARALYTPSGEPIQSWDDI
Sbjct: 901  PNTKRVWIYLNGGRPEDGTYAWGKTISELLQDCSSRLKMTHPARALYTPSGEPIQSWDDI 960

Query: 961  ERDMVICVSMGHGFKTPKELKQLMEIRANYARIRRQQGPQATDIVVSPSTKLLSLAHLHN 1020
            ERDMVICVSMGHGFKTPKELKQLMEIRANYARIRRQQGPQATDIVVSPSTKLLSLAHLHN
Sbjct: 961  ERDMVICVSMGHGFKTPKELKQLMEIRANYARIRRQQGPQATDIVVSPSTKLLSLAHLHN 1020


>gi|239744311 PREDICTED: doublecortin domain containing 5 [Homo
            sapiens]
          Length = 1020

 Score = 2063 bits (5345), Expect = 0.0
 Identities = 1020/1020 (100%), Positives = 1020/1020 (100%)

Query: 1    MKKPICKTTEPYAPVRLRVLQNGEKNKNRSVTILGPDISPGRKTQACPVLVWEGRGLWEW 60
            MKKPICKTTEPYAPVRLRVLQNGEKNKNRSVTILGPDISPGRKTQACPVLVWEGRGLWEW
Sbjct: 1    MKKPICKTTEPYAPVRLRVLQNGEKNKNRSVTILGPDISPGRKTQACPVLVWEGRGLWEW 60

Query: 61   EISVQCLTRLKTSVSKVVETDYPLVEGAEELGDKLDFDNLGERTRLHQKKPRKNFFRCTE 120
            EISVQCLTRLKTSVSKVVETDYPLVEGAEELGDKLDFDNLGERTRLHQKKPRKNFFRCTE
Sbjct: 61   EISVQCLTRLKTSVSKVVETDYPLVEGAEELGDKLDFDNLGERTRLHQKKPRKNFFRCTE 120

Query: 121  ILNLPSAARRLYNEKGKEIFALKDLQRDELVYVSCGELWINPDLSIAQQKKQIFLRNLES 180
            ILNLPSAARRLYNEKGKEIFALKDLQRDELVYVSCGELWINPDLSIAQQKKQIFLRNLES
Sbjct: 121  ILNLPSAARRLYNEKGKEIFALKDLQRDELVYVSCGELWINPDLSIAQQKKQIFLRNLES 180

Query: 181  DIAKIQIFCSTHKIEVLATEPPHPCLASTFGKLPKKILSNSWVLAAPPRNQIPVHVAGCA 240
            DIAKIQIFCSTHKIEVLATEPPHPCLASTFGKLPKKILSNSWVLAAPPRNQIPVHVAGCA
Sbjct: 181  DIAKIQIFCSTHKIEVLATEPPHPCLASTFGKLPKKILSNSWVLAAPPRNQIPVHVAGCA 240

Query: 241  SDWSSKEVQSDIVSGSKLAVHKPVAIFGEEKQVTEPEEKQMQEDPLTTENASSEILDSHV 300
            SDWSSKEVQSDIVSGSKLAVHKPVAIFGEEKQVTEPEEKQMQEDPLTTENASSEILDSHV
Sbjct: 241  SDWSSKEVQSDIVSGSKLAVHKPVAIFGEEKQVTEPEEKQMQEDPLTTENASSEILDSHV 300

Query: 301  RAHLRMKACHTLPRYAWQETSHDFDEDDSLPKKTEKGLFENVEPQKKHSCSPKHSKLHKH 360
            RAHLRMKACHTLPRYAWQETSHDFDEDDSLPKKTEKGLFENVEPQKKHSCSPKHSKLHKH
Sbjct: 301  RAHLRMKACHTLPRYAWQETSHDFDEDDSLPKKTEKGLFENVEPQKKHSCSPKHSKLHKH 360

Query: 361  CHQQFEYRDGQIISHAAPQLVLGVQGPNLRSGMEVVLVEKKSDGSHQRWIHQEDSRTFCT 420
            CHQQFEYRDGQIISHAAPQLVLGVQGPNLRSGMEVVLVEKKSDGSHQRWIHQEDSRTFCT
Sbjct: 361  CHQQFEYRDGQIISHAAPQLVLGVQGPNLRSGMEVVLVEKKSDGSHQRWIHQEDSRTFCT 420

Query: 421  FVILGAPHVKTRKREAVSGREMVILVDPSLETSESREKRTFHLVSNPDLVLAVSMTKTRN 480
            FVILGAPHVKTRKREAVSGREMVILVDPSLETSESREKRTFHLVSNPDLVLAVSMTKTRN
Sbjct: 421  FVILGAPHVKTRKREAVSGREMVILVDPSLETSESREKRTFHLVSNPDLVLAVSMTKTRN 480

Query: 481  EVCGYPVIVQKYKPYNNGAANQKWHYMKNIKALVAFHSTALDKEITSANYAGVCTSSVIK 540
            EVCGYPVIVQKYKPYNNGAANQKWHYMKNIKALVAFHSTALDKEITSANYAGVCTSSVIK
Sbjct: 481  EVCGYPVIVQKYKPYNNGAANQKWHYMKNIKALVAFHSTALDKEITSANYAGVCTSSVIK 540

Query: 541  EENIDQPGYCYLSPDGKRKTMLCLACGQSMRTEKGLKQLLPGVPFLCISGTKTQKPFLQG 600
            EENIDQPGYCYLSPDGKRKTMLCLACGQSMRTEKGLKQLLPGVPFLCISGTKTQKPFLQG
Sbjct: 541  EENIDQPGYCYLSPDGKRKTMLCLACGQSMRTEKGLKQLLPGVPFLCISGTKTQKPFLQG 600

Query: 601  PFKVISVAEAEKTLSYYQARLLSLRMKTCTQAASHSGMAATHQKAVKIIAYKNGDGYRNG 660
            PFKVISVAEAEKTLSYYQARLLSLRMKTCTQAASHSGMAATHQKAVKIIAYKNGDGYRNG
Sbjct: 601  PFKVISVAEAEKTLSYYQARLLSLRMKTCTQAASHSGMAATHQKAVKIIAYKNGDGYRNG 660

Query: 661  KLIVAGTFPMLLTECTEQLGLARAASKVYTKDGTPIFTLRDLVLWALDESFLQRDSEKQK 720
            KLIVAGTFPMLLTECTEQLGLARAASKVYTKDGTPIFTLRDLVLWALDESFLQRDSEKQK
Sbjct: 661  KLIVAGTFPMLLTECTEQLGLARAASKVYTKDGTPIFTLRDLVLWALDESFLQRDSEKQK 720

Query: 721  QDAAPVGKEQIIVESMEENPRMKVKNRLFAKSVTSDSLDGIDKSLLTLILRNPIAIWVSC 780
            QDAAPVGKEQIIVESMEENPRMKVKNRLFAKSVTSDSLDGIDKSLLTLILRNPIAIWVSC
Sbjct: 721  QDAAPVGKEQIIVESMEENPRMKVKNRLFAKSVTSDSLDGIDKSLLTLILRNPIAIWVSC 780

Query: 781  GEPFLPPNALQKAEKLEKQNWLKKDRILADLDTMRHKMRQLKGRRVAACQPATMVPTKSP 840
            GEPFLPPNALQKAEKLEKQNWLKKDRILADLDTMRHKMRQLKGRRVAACQPATMVPTKSP
Sbjct: 781  GEPFLPPNALQKAEKLEKQNWLKKDRILADLDTMRHKMRQLKGRRVAACQPATMVPTKSP 840

Query: 841  VQPVVVEGGWTEQTQQEIKLMELIRHTEAHLSEIQEMESKINFPIATKRIAVKPSNLYKQ 900
            VQPVVVEGGWTEQTQQEIKLMELIRHTEAHLSEIQEMESKINFPIATKRIAVKPSNLYKQ
Sbjct: 841  VQPVVVEGGWTEQTQQEIKLMELIRHTEAHLSEIQEMESKINFPIATKRIAVKPSNLYKQ 900

Query: 901  PNTKRVWIYLNGGRPEDGTYAWGKTISELLQDCSSRLKMTHPARALYTPSGEPIQSWDDI 960
            PNTKRVWIYLNGGRPEDGTYAWGKTISELLQDCSSRLKMTHPARALYTPSGEPIQSWDDI
Sbjct: 901  PNTKRVWIYLNGGRPEDGTYAWGKTISELLQDCSSRLKMTHPARALYTPSGEPIQSWDDI 960

Query: 961  ERDMVICVSMGHGFKTPKELKQLMEIRANYARIRRQQGPQATDIVVSPSTKLLSLAHLHN 1020
            ERDMVICVSMGHGFKTPKELKQLMEIRANYARIRRQQGPQATDIVVSPSTKLLSLAHLHN
Sbjct: 961  ERDMVICVSMGHGFKTPKELKQLMEIRANYARIRRQQGPQATDIVVSPSTKLLSLAHLHN 1020


>gi|153791347 doublecortin domain containing 1 [Homo sapiens]
          Length = 354

 Score = 43.9 bits (102), Expect = 8e-04
 Identities = 22/45 (48%), Positives = 29/45 (64%)

Query: 118 CTEILNLPSAARRLYNEKGKEIFALKDLQRDELVYVSCGELWINP 162
           CTE LNL  AARR++   GKE    +D+  +  VYVS GE ++NP
Sbjct: 202 CTEKLNLNMAARRVFLADGKEALEPEDIPHEADVYVSTGEPFLNP 246



 Score = 41.6 bits (96), Expect = 0.004
 Identities = 33/115 (28%), Positives = 50/115 (43%), Gaps = 13/115 (11%)

Query: 588 ISGTKTQKPFLQGPFKVISVAEAEKTLSYYQARLLSLRMKTCTQAASHSGMAATHQKAVK 647
           IS +K  +P +  P   + VAE             SL+ ++       S       + +K
Sbjct: 128 ISASKRNRP-VSAPVGQLRVAEFS-----------SLKFQSARNWQKLSQRHKLQPRVIK 175

Query: 648 IIAYKNGDGYRNGKLIVAGTFPMLLTECTEQLGLARAASKVYTKDGTPIFTLRDL 702
           + AYKNG      ++ V  T  +LL ECTE+L L  AA +V+  DG       D+
Sbjct: 176 VTAYKNGSRTVFARVTVP-TITLLLEECTEKLNLNMAARRVFLADGKEALEPEDI 229



 Score = 37.7 bits (86), Expect = 0.056
 Identities = 25/83 (30%), Positives = 40/83 (48%), Gaps = 2/83 (2%)

Query: 900 QPNTKRVWIYLNGGRPEDGTYAWGKTISELLQDCSSRLKMTHPARALYTPSGEPIQSWDD 959
           QP   +V  Y NG R          TI+ LL++C+ +L +   AR ++   G+     +D
Sbjct: 170 QPRVIKVTAYKNGSRTVFARVTV-PTITLLLEECTEKLNLNMAARRVFLADGKEALEPED 228

Query: 960 IERDMVICVSMGHGFKTP-KELK 981
           I  +  + VS G  F  P K++K
Sbjct: 229 IPHEADVYVSTGEPFLNPFKKIK 251


>gi|51173727 Sma- and Mad-related protein 1 [Homo sapiens]
          Length = 465

 Score = 35.0 bits (79), Expect = 0.36
 Identities = 21/81 (25%), Positives = 39/81 (48%), Gaps = 8/81 (9%)

Query: 920 YAWGKTISELLQDCSSRLKMT--------HPARALYTPSGEPIQSWDDIERDMVICVSMG 971
           Y  G+  +E L D S  ++          HP      PSG  ++ +++ E   ++  S+ 
Sbjct: 338 YVGGEVYAECLSDSSIFVQSRNCNYHHGFHPTTVCKIPSGCSLKIFNNQEFAQLLAQSVN 397

Query: 972 HGFKTPKELKQLMEIRANYAR 992
           HGF+T  EL ++  IR ++ +
Sbjct: 398 HGFETVYELTKMCTIRMSFVK 418


>gi|5174509 Sma- and Mad-related protein 1 [Homo sapiens]
          Length = 465

 Score = 35.0 bits (79), Expect = 0.36
 Identities = 21/81 (25%), Positives = 39/81 (48%), Gaps = 8/81 (9%)

Query: 920 YAWGKTISELLQDCSSRLKMT--------HPARALYTPSGEPIQSWDDIERDMVICVSMG 971
           Y  G+  +E L D S  ++          HP      PSG  ++ +++ E   ++  S+ 
Sbjct: 338 YVGGEVYAECLSDSSIFVQSRNCNYHHGFHPTTVCKIPSGCSLKIFNNQEFAQLLAQSVN 397

Query: 972 HGFKTPKELKQLMEIRANYAR 992
           HGF+T  EL ++  IR ++ +
Sbjct: 398 HGFETVYELTKMCTIRMSFVK 418


>gi|21618331 carnitine acetyltransferase precursor [Homo sapiens]
          Length = 626

 Score = 32.7 bits (73), Expect = 1.8
 Identities = 27/84 (32%), Positives = 36/84 (42%), Gaps = 12/84 (14%)

Query: 688 VYTKDGTPIFTLRDLVLWALDESFLQRDSEKQKQDAAPVGKEQI-IVESMEENPRMKVKN 746
           VY  DGTP+           D+ F+Q   EK    +    KE + I+ S   N   K  N
Sbjct: 216 VYHSDGTPL---------TADQIFVQL--EKIWNSSLQTNKEPVGILTSNHRNSWAKAYN 264

Query: 747 RLFAKSVTSDSLDGIDKSLLTLIL 770
            L    V  DS+  I KS+ T+ L
Sbjct: 265 TLIKDKVNRDSVRSIQKSIFTVCL 288


>gi|148746218 TAO kinase 3 [Homo sapiens]
          Length = 898

 Score = 32.3 bits (72), Expect = 2.3
 Identities = 37/132 (28%), Positives = 59/132 (44%), Gaps = 25/132 (18%)

Query: 246 KEVQSDIVSGS----KLAVHKPVAIFGEEKQVTEPEEKQMQEDPLTTENAS-SEILDSHV 300
           KEV++   + S    KLA  K VAI  +E +V   +EK+ Q+  L  +    +  L+S  
Sbjct: 495 KEVETHANNSSIELEKLA-KKQVAIIEKEAKVAAADEKKFQQQILAQQKKDLTTFLESQK 553

Query: 301 RAHLRMKACHTLPRYAWQETSHDFDEDDSLPKKTEKGLFENVEPQKKHSCSPKHSKLHKH 360
           + +   K C        ++   + +ED S PKK      E  E   KH  + +H++  + 
Sbjct: 554 KQY---KICK-------EKIKEEMNEDHSTPKK------EKQERISKHKENLQHTQAEEE 597

Query: 361 CH---QQFEYRD 369
            H   QQ  Y D
Sbjct: 598 AHLLTQQRLYYD 609


>gi|239753110 PREDICTED: doublecortin domain-containing protein
           ENSP00000382097-like [Homo sapiens]
          Length = 530

 Score = 32.0 bits (71), Expect = 3.0
 Identities = 18/51 (35%), Positives = 27/51 (52%), Gaps = 5/51 (9%)

Query: 645 AVKIIAYKNGDGYRNGKLIV-----AGTFPMLLTECTEQLGLARAASKVYT 690
           A  I+ Y+NGD +  GK  V     A TF  LL + TEQ+ +     +++T
Sbjct: 85  AKTIVVYRNGDPFYVGKKFVLSRRRAATFEALLEQLTEQVDVPFGVRRLFT 135


>gi|239747673 PREDICTED: doublecortin domain-containing protein
           ENSP00000382097-like [Homo sapiens]
          Length = 714

 Score = 32.0 bits (71), Expect = 3.0
 Identities = 18/51 (35%), Positives = 27/51 (52%), Gaps = 5/51 (9%)

Query: 645 AVKIIAYKNGDGYRNGKLIV-----AGTFPMLLTECTEQLGLARAASKVYT 690
           A  I+ Y+NGD +  GK  V     A TF  LL + TEQ+ +     +++T
Sbjct: 191 AKTIVVYRNGDPFYVGKKFVLSRRRAATFEALLEQLTEQVDVPFGVRRLFT 241


>gi|239741542 PREDICTED: doublecortin domain-containing protein
           ENSP00000382097-like [Homo sapiens]
          Length = 510

 Score = 32.0 bits (71), Expect = 3.0
 Identities = 18/51 (35%), Positives = 27/51 (52%), Gaps = 5/51 (9%)

Query: 645 AVKIIAYKNGDGYRNGKLIV-----AGTFPMLLTECTEQLGLARAASKVYT 690
           A  I+ Y+NGD +  GK  V     A TF  LL + TEQ+ +     +++T
Sbjct: 191 AKTIVVYRNGDPFYVGKKFVLSRRRAATFEALLEQLTEQVDVPFGVRRLFT 241


>gi|153085395 histone deacetylase 4 [Homo sapiens]
          Length = 1084

 Score = 31.6 bits (70), Expect = 4.0
 Identities = 35/158 (22%), Positives = 58/158 (36%), Gaps = 9/158 (5%)

Query: 852  EQTQQEIKLMELIRHTEAHLSEIQEMESKINFPIATKRIAVKPSNLYKQPNTKRVWIYLN 911
            E+ +QE +L +  +H E  L +++  E      +A+  + +K                LN
Sbjct: 135  ERHRQEQELEK--QHREQKLQQLKNKEKGKESAVASTEVKMKLQEFVLNKKKALAHRNLN 192

Query: 912  GGRPEDGTYAWGKTISELLQDCSSRLKMTHPARALYTPSGEPIQSWDDIERDMVICVSMG 971
                 D  Y +GKT    L   S       P   + T    P+    D + D  +  +  
Sbjct: 193  HCISSDPRYWYGKTQHSSLDQSSP------PQSGVSTSYNHPVLGMYDAKDDFPLRKTAS 246

Query: 972  H-GFKTPKELKQLMEIRANYARIRRQQGPQATDIVVSP 1008
                K    LKQ +  R +   +RR+ GP  T +   P
Sbjct: 247  EPNLKLRSRLKQKVAERRSSPLLRRKDGPVVTALKKRP 284


>gi|20986488 YY1-associated protein isoform 2 [Homo sapiens]
          Length = 796

 Score = 31.2 bits (69), Expect = 5.2
 Identities = 21/76 (27%), Positives = 38/76 (50%), Gaps = 2/76 (2%)

Query: 830 QPATMVPTKSPVQPVVVEGGWTEQTQQEIKLMELIRHTEAHLSEIQEMESKINFPIATKR 889
           QPAT++ T   V P+ V GG + ++   +  M     T   LSE Q + S  + P+    
Sbjct: 501 QPATVLQTVPGVPPLGVSGGESFESPAALPAMPPEARTSFPLSESQTLLS--SAPVPKVM 558

Query: 890 IAVKPSNLYKQPNTKR 905
           +    S+++++P  +R
Sbjct: 559 MPSPASSMFRKPYVRR 574


>gi|20986490 YY1-associated protein isoform 3 [Homo sapiens]
          Length = 750

 Score = 31.2 bits (69), Expect = 5.2
 Identities = 21/76 (27%), Positives = 38/76 (50%), Gaps = 2/76 (2%)

Query: 830 QPATMVPTKSPVQPVVVEGGWTEQTQQEIKLMELIRHTEAHLSEIQEMESKINFPIATKR 889
           QPAT++ T   V P+ V GG + ++   +  M     T   LSE Q + S  + P+    
Sbjct: 455 QPATVLQTVPGVPPLGVSGGESFESPAALPAMPPEARTSFPLSESQTLLS--SAPVPKVM 512

Query: 890 IAVKPSNLYKQPNTKR 905
           +    S+++++P  +R
Sbjct: 513 MPSPASSMFRKPYVRR 528


>gi|47778931 SMAD, mothers against DPP homolog 5 [Homo sapiens]
          Length = 465

 Score = 30.8 bits (68), Expect = 6.8
 Identities = 19/81 (23%), Positives = 37/81 (45%), Gaps = 8/81 (9%)

Query: 920 YAWGKTISELLQDCSSRLKMT--------HPARALYTPSGEPIQSWDDIERDMVICVSMG 971
           Y  G+  +E L D S  ++          HP      PS   ++ +++ E   ++  S+ 
Sbjct: 338 YVGGEVYAECLSDSSIFVQSRNCNFHHGFHPTTVCKIPSSCSLKIFNNQEFAQLLAQSVN 397

Query: 972 HGFKTPKELKQLMEIRANYAR 992
           HGF+   EL ++  IR ++ +
Sbjct: 398 HGFEAVYELTKMCTIRMSFVK 418


>gi|47778929 SMAD, mothers against DPP homolog 5 [Homo sapiens]
          Length = 465

 Score = 30.8 bits (68), Expect = 6.8
 Identities = 19/81 (23%), Positives = 37/81 (45%), Gaps = 8/81 (9%)

Query: 920 YAWGKTISELLQDCSSRLKMT--------HPARALYTPSGEPIQSWDDIERDMVICVSMG 971
           Y  G+  +E L D S  ++          HP      PS   ++ +++ E   ++  S+ 
Sbjct: 338 YVGGEVYAECLSDSSIFVQSRNCNFHHGFHPTTVCKIPSSCSLKIFNNQEFAQLLAQSVN 397

Query: 972 HGFKTPKELKQLMEIRANYAR 992
           HGF+   EL ++  IR ++ +
Sbjct: 398 HGFEAVYELTKMCTIRMSFVK 418


>gi|47778925 SMAD, mothers against DPP homolog 5 [Homo sapiens]
          Length = 465

 Score = 30.8 bits (68), Expect = 6.8
 Identities = 19/81 (23%), Positives = 37/81 (45%), Gaps = 8/81 (9%)

Query: 920 YAWGKTISELLQDCSSRLKMT--------HPARALYTPSGEPIQSWDDIERDMVICVSMG 971
           Y  G+  +E L D S  ++          HP      PS   ++ +++ E   ++  S+ 
Sbjct: 338 YVGGEVYAECLSDSSIFVQSRNCNFHHGFHPTTVCKIPSSCSLKIFNNQEFAQLLAQSVN 397

Query: 972 HGFKTPKELKQLMEIRANYAR 992
           HGF+   EL ++  IR ++ +
Sbjct: 398 HGFEAVYELTKMCTIRMSFVK 418


>gi|4758128 doublecortin-like kinase 1 [Homo sapiens]
          Length = 729

 Score = 30.8 bits (68), Expect = 6.8
 Identities = 13/39 (33%), Positives = 24/39 (61%), Gaps = 1/39 (2%)

Query: 119 TEILNLPSAA-RRLYNEKGKEIFALKDLQRDELVYVSCG 156
           T+ + L S   +RLY   GK++  L+D   D+ ++++CG
Sbjct: 221 TDAIKLDSGVVKRLYTLDGKQVMCLQDFFGDDDIFIACG 259


>gi|46358428 selective LIM binding factor homolog [Homo sapiens]
          Length = 1749

 Score = 30.4 bits (67), Expect = 8.9
 Identities = 26/94 (27%), Positives = 41/94 (43%), Gaps = 8/94 (8%)

Query: 428  HVKTRKREAVSGREMVILVDPSLETSESREKRTFHLVSNPDLVLAVSMTKTRNEVC---G 484
            HV   +RE V    + + +D  LE    R++R  +  S     L  + T  R   C   G
Sbjct: 1636 HVPEAEREEVRDWVLTVSMDQRLEQVLPRDERGAYEAS-----LVAASTGVRALPCLITG 1690

Query: 485  YPVIVQKYKPYNNGAANQKWHYMKNIKALVAFHS 518
            YP++  K +    G A  K ++ K + A+   HS
Sbjct: 1691 YPILRNKIEFKRPGKAANKDNWNKFLMAIKTSHS 1724


>gi|110347455 Brn3b POU domain transcription factor [Homo sapiens]
          Length = 409

 Score = 30.4 bits (67), Expect = 8.9
 Identities = 13/36 (36%), Positives = 21/36 (58%), Gaps = 1/36 (2%)

Query: 354 HSKLHKHCHQQFEYRDGQIISHAAPQLVLG-VQGPN 388
           H   H H HQ  +  +G+++ H +P L LG + GP+
Sbjct: 174 HHHHHHHHHQPHQALEGELLEHLSPGLALGAMAGPD 209


>gi|85986587 MAS-related GPR, member E [Homo sapiens]
          Length = 311

 Score = 30.4 bits (67), Expect = 8.9
 Identities = 25/103 (24%), Positives = 45/103 (43%), Gaps = 15/103 (14%)

Query: 142 LKDLQRDELVYVSCGELWINPDLSIAQQKKQIFLRNLESDIAKIQIFCSTHKIEVLATEP 201
           L D+   +L+++ C  + I PDL    Q +  F   +++ +A ++ FC    + +LA   
Sbjct: 61  LLDVACADLIFLGCHMVAIVPDLL---QGRLDFPGFVQTSLATLRFFCYIVGLSLLAAVS 117

Query: 202 PHPCLASTFGKLPKKILSNSWVLAAPPRNQIPVHVAGCASDWS 244
              CLA+ F          +W     PR+   +    CA  W+
Sbjct: 118 VEQCLAALF---------PAWYSCRRPRH---LTTCVCALTWA 148


>gi|38016202 SATB homeobox 2 [Homo sapiens]
          Length = 733

 Score = 30.4 bits (67), Expect = 8.9
 Identities = 26/111 (23%), Positives = 43/111 (38%), Gaps = 13/111 (11%)

Query: 274 TEPEEKQMQEDPLTTENASSEILDSHVRAHLR-----MKACHTLPRYAWQETSHDFDEDD 328
           + P  ++    P  TE++ ++   S  +  L          H +  Y  QE  H      
Sbjct: 593 SSPPREEAPPPPPPTEDSCAKKPRSRTKISLEALGILQSFIHDVGLYPDQEAIHTLSAQL 652

Query: 329 SLPKKTEKGLFENVEPQKKHSCSPKHSKLHKHCHQQF---EYRDGQIISHA 376
            LPK T    F+N     KH     H KL +H        EY+D ++++ +
Sbjct: 653 DLPKHTIIKFFQNQRYHVKH-----HGKLKEHLGSAVDVAEYKDEELLTES 698


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.317    0.132    0.393 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 40,682,913
Number of Sequences: 37866
Number of extensions: 1851652
Number of successful extensions: 5033
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 16
Number of HSP's that attempted gapping in prelim test: 4991
Number of HSP's gapped (non-prelim): 34
length of query: 1020
length of database: 18,247,518
effective HSP length: 112
effective length of query: 908
effective length of database: 14,006,526
effective search space: 12717925608
effective search space used: 12717925608
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 67 (30.4 bits)

Search results were obtained with NCBI BLAST and RefSeq entries.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press