Guide to the Human Genome
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Name: DCDC1 Sequence: fasta or formatted (354aa) NCBI GI: 153791347
Description:

doublecortin domain containing 1

Referenced in:

Neurons

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.9         21           2
 C cysteine            1.1          4           1
 D aspartate           5.4         19           2
 E glutamate           5.9         21           2
 F phenylalanine       3.1         11           2
 G glycine             4.8         17           1
 H histidine           2.8         10           1
 I isoleucine          4.8         17           1
 K lysine              8.8         31           2
 L leucine            10.2         36           3
 M methionine          2.8         10           1
 N asparagine          4.8         17           2
 P proline             4.2         15           1
 Q glutamine           4.0         14           2
 R arginine            5.9         21           2
 S serine              9.3         33           2
 T threonine           7.1         25           2
 V valine              5.9         21           1
 W tryptophan          0.6          2           1
 Y tyrosine            2.5          9           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   doublecortin domain containing 1 
DCDC5                 0.028   PREDICTED: doublecortin domain containing 5 
DCDC5                 0.028   PREDICTED: doublecortin domain containing 5 
DCDC5                 0.028   PREDICTED: doublecortin domain containing 5 
MLLT3                 0.013   myeloid/lymphoid or mixed-lineage leukemia (trithor...
DOCK4                 0.012   dedicator of cytokinesis 4 
DCX                   0.010   doublecortin isoform c 
DCX                   0.010   doublecortin isoform b 
DCX                   0.010   doublecortin isoform c 
DCX                   0.010   doublecortin isoform a 
LRRCC1                0.009   sodium channel associated protein 2 isoform b [Homo...
LRRCC1                0.009   sodium channel associated protein 2 isoform a [Homo...
DCLK2                 0.009   doublecortin-like kinase 2 isoform b 
DCLK2                 0.009   doublecortin-like kinase 2 isoform a 
C17orf80              0.009   lung cancer-related protein 8 isoform c 
C17orf80              0.009   lung cancer-related protein 8 isoform b 
C17orf80              0.009   lung cancer-related protein 8 isoform a 
WNK3                  0.007   WNK lysine deficient protein kinase 3 isoform 1 [Hom...
WNK3                  0.007   WNK lysine deficient protein kinase 3 isoform 2 [Hom...
DCLK1                 0.007   doublecortin-like kinase 1 
KIAA0408              0.007   hypothetical protein LOC9729 
RASSF4                0.006   Ras association domain family 4 
ASXL3                 0.006   additional sex combs like 3 
SRGAP3                0.004   SLIT-ROBO Rho GTPase activating protein 3 isoform a ...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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