Guide to the Human Genome
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Search of human proteins with 239744309

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|239744309 PREDICTED: hypothetical protein XP_002343114 [Homo
sapiens]
         (219 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|239755536 PREDICTED: hypothetical protein [Homo sapiens]           438   e-123
gi|239749998 PREDICTED: hypothetical protein XP_002347249 [Homo ...   438   e-123
gi|239744309 PREDICTED: hypothetical protein XP_002343114 [Homo ...   438   e-123
gi|41281709 nuclear factor of kappa light polypeptide gene enhan...    33   0.19 
gi|239755499 PREDICTED: hypothetical protein [Homo sapiens]            32   0.55 
gi|38455385 lysosomal-associated membrane protein 3 [Homo sapiens]     31   0.72 
gi|38348368 hypothetical protein LOC374872 [Homo sapiens]              31   0.72 
gi|239757116 PREDICTED: hypothetical protein [Homo sapiens]            31   0.94 
gi|239751619 PREDICTED: hypothetical protein [Homo sapiens]            31   0.94 
gi|169213518 PREDICTED: hypothetical protein [Homo sapiens]            31   0.94 
gi|124378039 SEC16 homolog A [Homo sapiens]                            30   2.1  
gi|239754668 PREDICTED: mucin 12 [Homo sapiens]                        30   2.1  
gi|239749217 PREDICTED: similar to Mucin-12, partial [Homo sapiens]    30   2.1  
gi|239743293 PREDICTED: mucin 12 [Homo sapiens]                        30   2.1  
gi|51873034 F-box and leucine-rich repeat protein 9 [Homo sapiens]     29   2.7  
gi|16306591 F-box and leucine-rich repeat protein 9 [Homo sapiens]     29   2.7  
gi|239743602 PREDICTED: hypothetical protein XP_002342903 [Homo ...    28   4.7  
gi|239743600 PREDICTED: hypothetical protein XP_002342902 [Homo ...    28   4.7  
gi|239743598 PREDICTED: hypothetical protein XP_002342901 [Homo ...    28   4.7  
gi|239743596 PREDICTED: hypothetical protein XP_002342900 [Homo ...    28   4.7  
gi|194272180 plexin B1 [Homo sapiens]                                  28   4.7  
gi|40254442 plexin B1 [Homo sapiens]                                   28   4.7  
gi|31543535 R3H domain containing 1 [Homo sapiens]                     28   4.7  
gi|4502745 cyclin-dependent kinase 8 [Homo sapiens]                    28   4.7  
gi|30387611 cell division cycle 2-like 6 (CDK8-like) [Homo sapiens]    28   4.7  
gi|6912540 nucleotide binding protein 2 (MinD homolog, E. coli) ...    28   4.7  
gi|126273519 exonuclease GOR [Homo sapiens]                            28   4.7  
gi|239754512 PREDICTED: hypothetical protein [Homo sapiens]            28   6.1  
gi|40316918 NOL1/NOP2/Sun domain family 4 protein [Homo sapiens]       28   6.1  
gi|32129214 neuronal calcium-binding protein 2 [Homo sapiens]          28   6.1  

>gi|239755536 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 219

 Score =  438 bits (1127), Expect = e-123
 Identities = 219/219 (100%), Positives = 219/219 (100%)

Query: 1   MAPNGEGQQLVFVPEPHRDVQCLLQQGPGVDQHSQKVLVEPALLPAVLFLALLELALQLS 60
           MAPNGEGQQLVFVPEPHRDVQCLLQQGPGVDQHSQKVLVEPALLPAVLFLALLELALQLS
Sbjct: 1   MAPNGEGQQLVFVPEPHRDVQCLLQQGPGVDQHSQKVLVEPALLPAVLFLALLELALQLS 60

Query: 61  EGFVRVGVGIPDLHAPSILHLAAQHGELLPQGEAQQAANLAPLPLGAAPVVTHPEEQLAL 120
           EGFVRVGVGIPDLHAPSILHLAAQHGELLPQGEAQQAANLAPLPLGAAPVVTHPEEQLAL
Sbjct: 61  EGFVRVGVGIPDLHAPSILHLAAQHGELLPQGEAQQAANLAPLPLGAAPVVTHPEEQLAL 120

Query: 121 LGVIVLLIVPIGHEVVVQSPIGHLWVEGAIEVALTQVAEETHAEELQKHHSGYSGWPGTP 180
           LGVIVLLIVPIGHEVVVQSPIGHLWVEGAIEVALTQVAEETHAEELQKHHSGYSGWPGTP
Sbjct: 121 LGVIVLLIVPIGHEVVVQSPIGHLWVEGAIEVALTQVAEETHAEELQKHHSGYSGWPGTP 180

Query: 181 GGDFLPRHKEGSVFASQRLPETAAPAAAQDAPTLAPLAR 219
           GGDFLPRHKEGSVFASQRLPETAAPAAAQDAPTLAPLAR
Sbjct: 181 GGDFLPRHKEGSVFASQRLPETAAPAAAQDAPTLAPLAR 219


>gi|239749998 PREDICTED: hypothetical protein XP_002347249 [Homo
           sapiens]
          Length = 219

 Score =  438 bits (1127), Expect = e-123
 Identities = 219/219 (100%), Positives = 219/219 (100%)

Query: 1   MAPNGEGQQLVFVPEPHRDVQCLLQQGPGVDQHSQKVLVEPALLPAVLFLALLELALQLS 60
           MAPNGEGQQLVFVPEPHRDVQCLLQQGPGVDQHSQKVLVEPALLPAVLFLALLELALQLS
Sbjct: 1   MAPNGEGQQLVFVPEPHRDVQCLLQQGPGVDQHSQKVLVEPALLPAVLFLALLELALQLS 60

Query: 61  EGFVRVGVGIPDLHAPSILHLAAQHGELLPQGEAQQAANLAPLPLGAAPVVTHPEEQLAL 120
           EGFVRVGVGIPDLHAPSILHLAAQHGELLPQGEAQQAANLAPLPLGAAPVVTHPEEQLAL
Sbjct: 61  EGFVRVGVGIPDLHAPSILHLAAQHGELLPQGEAQQAANLAPLPLGAAPVVTHPEEQLAL 120

Query: 121 LGVIVLLIVPIGHEVVVQSPIGHLWVEGAIEVALTQVAEETHAEELQKHHSGYSGWPGTP 180
           LGVIVLLIVPIGHEVVVQSPIGHLWVEGAIEVALTQVAEETHAEELQKHHSGYSGWPGTP
Sbjct: 121 LGVIVLLIVPIGHEVVVQSPIGHLWVEGAIEVALTQVAEETHAEELQKHHSGYSGWPGTP 180

Query: 181 GGDFLPRHKEGSVFASQRLPETAAPAAAQDAPTLAPLAR 219
           GGDFLPRHKEGSVFASQRLPETAAPAAAQDAPTLAPLAR
Sbjct: 181 GGDFLPRHKEGSVFASQRLPETAAPAAAQDAPTLAPLAR 219


>gi|239744309 PREDICTED: hypothetical protein XP_002343114 [Homo
           sapiens]
          Length = 219

 Score =  438 bits (1127), Expect = e-123
 Identities = 219/219 (100%), Positives = 219/219 (100%)

Query: 1   MAPNGEGQQLVFVPEPHRDVQCLLQQGPGVDQHSQKVLVEPALLPAVLFLALLELALQLS 60
           MAPNGEGQQLVFVPEPHRDVQCLLQQGPGVDQHSQKVLVEPALLPAVLFLALLELALQLS
Sbjct: 1   MAPNGEGQQLVFVPEPHRDVQCLLQQGPGVDQHSQKVLVEPALLPAVLFLALLELALQLS 60

Query: 61  EGFVRVGVGIPDLHAPSILHLAAQHGELLPQGEAQQAANLAPLPLGAAPVVTHPEEQLAL 120
           EGFVRVGVGIPDLHAPSILHLAAQHGELLPQGEAQQAANLAPLPLGAAPVVTHPEEQLAL
Sbjct: 61  EGFVRVGVGIPDLHAPSILHLAAQHGELLPQGEAQQAANLAPLPLGAAPVVTHPEEQLAL 120

Query: 121 LGVIVLLIVPIGHEVVVQSPIGHLWVEGAIEVALTQVAEETHAEELQKHHSGYSGWPGTP 180
           LGVIVLLIVPIGHEVVVQSPIGHLWVEGAIEVALTQVAEETHAEELQKHHSGYSGWPGTP
Sbjct: 121 LGVIVLLIVPIGHEVVVQSPIGHLWVEGAIEVALTQVAEETHAEELQKHHSGYSGWPGTP 180

Query: 181 GGDFLPRHKEGSVFASQRLPETAAPAAAQDAPTLAPLAR 219
           GGDFLPRHKEGSVFASQRLPETAAPAAAQDAPTLAPLAR
Sbjct: 181 GGDFLPRHKEGSVFASQRLPETAAPAAAQDAPTLAPLAR 219


>gi|41281709 nuclear factor of kappa light polypeptide gene enhancer
           in B-cells inhibitor, delta [Homo sapiens]
          Length = 313

 Score = 33.1 bits (74), Expect = 0.19
 Identities = 32/101 (31%), Positives = 48/101 (47%), Gaps = 10/101 (9%)

Query: 20  VQCLLQQGPGVDQHSQKVLVEPALLPAVLFLA---LLELALQLSEGFVRVGVGIPDLHAP 76
           V  LLQ G   +  SQ++     +L   +  A   L++L L+L  G +R  V +   H  
Sbjct: 189 VHMLLQMG--ANHTSQEIKSNKTVLHLAVQAANPTLVQLLLELPRGDLRTFVNMK-AHGN 245

Query: 77  SILHLAAQHGELLPQGEAQQAANLAPLPLGAAPVVTHPEEQ 117
           + LH+AA     LP G AQ+A     L  GA P + + E +
Sbjct: 246 TALHMAAA----LPPGPAQEAIVRHLLAAGADPTLRNLENE 282


>gi|239755499 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 516

 Score = 31.6 bits (70), Expect = 0.55
 Identities = 40/159 (25%), Positives = 68/159 (42%), Gaps = 32/159 (20%)

Query: 33  HSQKVLVEPALLPAVLFLALLELALQLS---EGFV-RVGVGIPDLHAPSILHLAAQHGE- 87
           H   VL    +L A  F  +++   +L+   +GF+  + +GI    A +  H A +HG  
Sbjct: 151 HGHVVLAHGPVLQAPAFAIVVDKLCRLAGEEQGFLAHLDLGIEAAQAAA--HAALEHGVI 208

Query: 88  ---------------LLPQGEAQQA-----ANLAPLPLGAAPVVTHPEEQLA----LLGV 123
                          LL   EAQ+      A+LA   LG  P    P+  LA    L+ +
Sbjct: 209 IVVGVAQGLLEALQGLLEDAEAQEGIAHAQADLAS-ELGTCPGTRQPKAGLAVGDGLVKL 267

Query: 124 IVLLIVPIGHEVVVQSPIGHLWVEGAIEVALTQVAEETH 162
             LL+     +V +Q  +G L + G +++  +++   TH
Sbjct: 268 AQLLVAACQVQVALQEEVGILQLPGRVDLDHSELHTATH 306


>gi|38455385 lysosomal-associated membrane protein 3 [Homo sapiens]
          Length = 416

 Score = 31.2 bits (69), Expect = 0.72
 Identities = 14/31 (45%), Positives = 17/31 (54%)

Query: 186 PRHKEGSVFASQRLPETAAPAAAQDAPTLAP 216
           P H  G+  A+     TAAPA+    PTLAP
Sbjct: 188 PTHAPGTTAAAHNTTRTAAPASTVPGPTLAP 218


>gi|38348368 hypothetical protein LOC374872 [Homo sapiens]
          Length = 473

 Score = 31.2 bits (69), Expect = 0.72
 Identities = 29/97 (29%), Positives = 38/97 (39%), Gaps = 14/97 (14%)

Query: 28  PGVDQHS---QKVLVEPALLPAVLFLALLELALQLSEGFVRVGVGIPDLHAPSILHLAAQ 84
           P +  HS    +  V PA LPA L     +  L         G+ + DLH+P  +H A  
Sbjct: 89  PFLGSHSVDKSQAAVGPACLPAELTFGPADAPL---------GLSLRDLHSPEAVHTALA 139

Query: 85  HGELLPQGEAQQAANLAPLPLGAAPVVTHPEEQLALL 121
             +L  QG     A L    +G  P   HP     LL
Sbjct: 140 ARQL--QGLRTIYARLRARLMGGHPGPCHPGHSFRLL 174


>gi|239757116 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 497

 Score = 30.8 bits (68), Expect = 0.94
 Identities = 24/68 (35%), Positives = 31/68 (45%), Gaps = 6/68 (8%)

Query: 85  HGELLPQGEAQ--QAANLAPLPLGAAPVVTHPEEQLALL----GVIVLLIVPIGHEVVVQ 138
           H  L PQ + Q  QAA L  +  G   +   P    ALL    G + + +V   HE  V 
Sbjct: 415 HAGLAPQQQLQDLQAAGLGAVMQGRVALGAAPVHLGALLQQVAGDLTVALVARDHEARVA 474

Query: 139 SPIGHLWV 146
            P+GHL V
Sbjct: 475 VPVGHLQV 482


>gi|239751619 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 497

 Score = 30.8 bits (68), Expect = 0.94
 Identities = 24/68 (35%), Positives = 31/68 (45%), Gaps = 6/68 (8%)

Query: 85  HGELLPQGEAQ--QAANLAPLPLGAAPVVTHPEEQLALL----GVIVLLIVPIGHEVVVQ 138
           H  L PQ + Q  QAA L  +  G   +   P    ALL    G + + +V   HE  V 
Sbjct: 415 HAGLAPQQQLQDLQAAGLGAVMQGRVALGAAPVHLGALLQQVAGDLTVALVARDHEARVA 474

Query: 139 SPIGHLWV 146
            P+GHL V
Sbjct: 475 VPVGHLQV 482


>gi|169213518 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 497

 Score = 30.8 bits (68), Expect = 0.94
 Identities = 24/68 (35%), Positives = 31/68 (45%), Gaps = 6/68 (8%)

Query: 85  HGELLPQGEAQ--QAANLAPLPLGAAPVVTHPEEQLALL----GVIVLLIVPIGHEVVVQ 138
           H  L PQ + Q  QAA L  +  G   +   P    ALL    G + + +V   HE  V 
Sbjct: 415 HAGLAPQQQLQDLQAAGLGAVMQGRVALGAAPVHLGALLQQVAGDLTVALVARDHEARVA 474

Query: 139 SPIGHLWV 146
            P+GHL V
Sbjct: 475 VPVGHLQV 482


>gi|124378039 SEC16 homolog A [Homo sapiens]
          Length = 2357

 Score = 29.6 bits (65), Expect = 2.1
 Identities = 14/31 (45%), Positives = 19/31 (61%), Gaps = 1/31 (3%)

Query: 16  PHRDVQCLLQQGPGVDQHSQKVLVEPALLPA 46
           PH     +L QGPG +QHS  ++  PA LP+
Sbjct: 248 PHFPTPSILHQGPGHEQHS-PLVAPPAALPS 277


>gi|239754668 PREDICTED: mucin 12 [Homo sapiens]
          Length = 1952

 Score = 29.6 bits (65), Expect = 2.1
 Identities = 19/55 (34%), Positives = 24/55 (43%), Gaps = 6/55 (10%)

Query: 162 HAEELQKHHSGYSGWPGTPGGDFLPRHKEGSVFASQRLPETAAPAAAQDAPTLAP 216
           H+EE    HSG    PG  G    P H   SVF  +  P+T+   +A    T  P
Sbjct: 141 HSEESTVSHSG----PGATGTTLFPSHSATSVFVGE--PKTSPITSASMETTALP 189


>gi|239749217 PREDICTED: similar to Mucin-12, partial [Homo sapiens]
          Length = 861

 Score = 29.6 bits (65), Expect = 2.1
 Identities = 19/55 (34%), Positives = 24/55 (43%), Gaps = 6/55 (10%)

Query: 162 HAEELQKHHSGYSGWPGTPGGDFLPRHKEGSVFASQRLPETAAPAAAQDAPTLAP 216
           H+EE    HSG    PG  G    P H   SVF  +  P+T+   +A    T  P
Sbjct: 76  HSEESTVSHSG----PGATGTTLFPSHSATSVFVGE--PKTSPITSASMETTALP 124


>gi|239743293 PREDICTED: mucin 12 [Homo sapiens]
          Length = 5478

 Score = 29.6 bits (65), Expect = 2.1
 Identities = 19/55 (34%), Positives = 24/55 (43%), Gaps = 6/55 (10%)

Query: 162 HAEELQKHHSGYSGWPGTPGGDFLPRHKEGSVFASQRLPETAAPAAAQDAPTLAP 216
           H+EE    HSG    PG  G    P H   SVF  +  P+T+   +A    T  P
Sbjct: 220 HSEESTVSHSG----PGATGTTLFPSHSATSVFVGE--PKTSPITSASMETTALP 268


>gi|51873034 F-box and leucine-rich repeat protein 9 [Homo sapiens]
          Length = 223

 Score = 29.3 bits (64), Expect = 2.7
 Identities = 25/87 (28%), Positives = 38/87 (43%), Gaps = 1/87 (1%)

Query: 14  PEPHRDVQCLLQQGPGVDQHSQKVLVEPALLPAVLFLALLELALQLSEGFVRVGVGIPDL 73
           PEP       L+    +D  +   L + +L   + FL L +L+L L       G+     
Sbjct: 64  PEPQGPSLLTLRALQELDLTACSKLTDASLAKVLQFLQLRQLSLSLLPELTDNGLVAVAR 123

Query: 74  HAPSILHLAAQH-GELLPQGEAQQAAN 99
             PS+ HLA  H   L  +G AQ A++
Sbjct: 124 GCPSLEHLALSHCSRLSDKGWAQAASS 150


>gi|16306591 F-box and leucine-rich repeat protein 9 [Homo sapiens]
          Length = 223

 Score = 29.3 bits (64), Expect = 2.7
 Identities = 25/87 (28%), Positives = 38/87 (43%), Gaps = 1/87 (1%)

Query: 14  PEPHRDVQCLLQQGPGVDQHSQKVLVEPALLPAVLFLALLELALQLSEGFVRVGVGIPDL 73
           PEP       L+    +D  +   L + +L   + FL L +L+L L       G+     
Sbjct: 64  PEPQGPSLLTLRALQELDLTACSKLTDASLAKVLQFLQLRQLSLSLLPELTDNGLVAVAR 123

Query: 74  HAPSILHLAAQH-GELLPQGEAQQAAN 99
             PS+ HLA  H   L  +G AQ A++
Sbjct: 124 GCPSLEHLALSHCSRLSDKGWAQAASS 150


>gi|239743602 PREDICTED: hypothetical protein XP_002342903 [Homo
           sapiens]
          Length = 675

 Score = 28.5 bits (62), Expect = 4.7
 Identities = 21/71 (29%), Positives = 28/71 (39%), Gaps = 11/71 (15%)

Query: 156 QVAEETHAEELQKHHSGYSGWPGTPGGD----------FLPRHKEGSVFASQRLPETAAP 205
           +VAEE  A E  +H  G     G P G           F P + E    A +  PE +  
Sbjct: 19  KVAEEA-ALEASRHLGGEQSQAGAPEGSKMLRATAPCWFRPGYPEAKKVAKEAAPEASRH 77

Query: 206 AAAQDAPTLAP 216
             A+ +P  AP
Sbjct: 78  LGAEQSPAGAP 88


>gi|239743600 PREDICTED: hypothetical protein XP_002342902 [Homo
           sapiens]
          Length = 675

 Score = 28.5 bits (62), Expect = 4.7
 Identities = 21/71 (29%), Positives = 28/71 (39%), Gaps = 11/71 (15%)

Query: 156 QVAEETHAEELQKHHSGYSGWPGTPGGD----------FLPRHKEGSVFASQRLPETAAP 205
           +VAEE  A E  +H  G     G P G           F P + E    A +  PE +  
Sbjct: 19  KVAEEA-ALEASRHLGGEQSQAGAPEGSKMLRATAPCWFRPGYPEAKKVAKEAAPEASRH 77

Query: 206 AAAQDAPTLAP 216
             A+ +P  AP
Sbjct: 78  LGAEQSPAGAP 88


>gi|239743598 PREDICTED: hypothetical protein XP_002342901 [Homo
           sapiens]
          Length = 675

 Score = 28.5 bits (62), Expect = 4.7
 Identities = 21/71 (29%), Positives = 28/71 (39%), Gaps = 11/71 (15%)

Query: 156 QVAEETHAEELQKHHSGYSGWPGTPGGD----------FLPRHKEGSVFASQRLPETAAP 205
           +VAEE  A E  +H  G     G P G           F P + E    A +  PE +  
Sbjct: 19  KVAEEA-ALEASRHLGGEQSQAGAPEGSKMLRATAPCWFRPGYPEAKKVAKEAAPEASRH 77

Query: 206 AAAQDAPTLAP 216
             A+ +P  AP
Sbjct: 78  LGAEQSPAGAP 88


>gi|239743596 PREDICTED: hypothetical protein XP_002342900 [Homo
           sapiens]
          Length = 675

 Score = 28.5 bits (62), Expect = 4.7
 Identities = 21/71 (29%), Positives = 28/71 (39%), Gaps = 11/71 (15%)

Query: 156 QVAEETHAEELQKHHSGYSGWPGTPGGD----------FLPRHKEGSVFASQRLPETAAP 205
           +VAEE  A E  +H  G     G P G           F P + E    A +  PE +  
Sbjct: 19  KVAEEA-ALEASRHLGGEQSQAGAPEGSKMLRATAPCWFRPGYPEAKKVAKEAAPEASRH 77

Query: 206 AAAQDAPTLAP 216
             A+ +P  AP
Sbjct: 78  LGAEQSPAGAP 88


>gi|194272180 plexin B1 [Homo sapiens]
          Length = 2135

 Score = 28.5 bits (62), Expect = 4.7
 Identities = 16/43 (37%), Positives = 20/43 (46%)

Query: 174 SGWPGTPGGDFLPRHKEGSVFASQRLPETAAPAAAQDAPTLAP 216
           SG   +PG    P H+E S  + Q  P TA PA     P+  P
Sbjct: 742 SGSISSPGSTGSPLHEEPSPPSPQNGPGTAVPAPTDFRPSATP 784


>gi|40254442 plexin B1 [Homo sapiens]
          Length = 2135

 Score = 28.5 bits (62), Expect = 4.7
 Identities = 16/43 (37%), Positives = 20/43 (46%)

Query: 174 SGWPGTPGGDFLPRHKEGSVFASQRLPETAAPAAAQDAPTLAP 216
           SG   +PG    P H+E S  + Q  P TA PA     P+  P
Sbjct: 742 SGSISSPGSTGSPLHEEPSPPSPQNGPGTAVPAPTDFRPSATP 784


>gi|31543535 R3H domain containing 1 [Homo sapiens]
          Length = 1099

 Score = 28.5 bits (62), Expect = 4.7
 Identities = 15/55 (27%), Positives = 28/55 (50%), Gaps = 1/55 (1%)

Query: 128 IVPIGHEVVVQSPIGHLWVEGAIEVALTQVAEETHAEELQKHHSGYSGWPGTPGG 182
           ++P G +  + S +G+L   G+ +V   +      +++LQ H    +G P  PGG
Sbjct: 775 VIPPGQQNNLSSSVGYLQHPGSEQVQFPRTTSPCSSQQLQGHQC-TAGPPPPPGG 828


>gi|4502745 cyclin-dependent kinase 8 [Homo sapiens]
          Length = 464

 Score = 28.5 bits (62), Expect = 4.7
 Identities = 33/130 (25%), Positives = 48/130 (36%), Gaps = 16/130 (12%)

Query: 3   PNGEGQQLVFVPEPHRDVQCLLQQGPGVDQH------SQKVLVEPALLPAVLFLALLELA 56
           PN    Q VF+    R V  L         H      + K   +P  LP  +  +LL   
Sbjct: 76  PNVISLQKVFLSHADRKVWLLFDYAEHDLWHIIKFHRASKANKKPVQLPRGMVKSLLYQI 135

Query: 57  LQLSEGFVRVGVGIPDLHAPSILHLAAQHGELLPQGEAQQAANLAPLPLGAAPVVTHPEE 116
           L           GI  LHA  +LH   +   +L  GE  +   +    +G A +   P +
Sbjct: 136 LD----------GIHYLHANWVLHRDLKPANILVMGEGPERGRVKIADMGFARLFNSPLK 185

Query: 117 QLALLGVIVL 126
            LA L  +V+
Sbjct: 186 PLADLDPVVV 195


>gi|30387611 cell division cycle 2-like 6 (CDK8-like) [Homo sapiens]
          Length = 502

 Score = 28.5 bits (62), Expect = 4.7
 Identities = 33/130 (25%), Positives = 48/130 (36%), Gaps = 16/130 (12%)

Query: 3   PNGEGQQLVFVPEPHRDVQCLLQQGPGVDQH------SQKVLVEPALLPAVLFLALLELA 56
           PN    Q VF+    R V  L         H      + K   +P  LP  +  +LL   
Sbjct: 76  PNVIALQKVFLSHSDRKVWLLFDYAEHDLWHIIKFHRASKANKKPMQLPRSMVKSLLYQI 135

Query: 57  LQLSEGFVRVGVGIPDLHAPSILHLAAQHGELLPQGEAQQAANLAPLPLGAAPVVTHPEE 116
           L           GI  LHA  +LH   +   +L  GE  +   +    +G A +   P +
Sbjct: 136 LD----------GIHYLHANWVLHRDLKPANILVMGEGPERGRVKIADMGFARLFNSPLK 185

Query: 117 QLALLGVIVL 126
            LA L  +V+
Sbjct: 186 PLADLDPVVV 195


>gi|6912540 nucleotide binding protein 2 (MinD homolog, E. coli)
           [Homo sapiens]
          Length = 271

 Score = 28.5 bits (62), Expect = 4.7
 Identities = 24/77 (31%), Positives = 33/77 (42%), Gaps = 11/77 (14%)

Query: 54  ELALQLSEGFVRVGVGIPDLHAPSILHLAAQHGELLPQGEAQQAANLAPLPLGAAPVVTH 113
           ELAL L     +VG+   DL  PSI  +    G  + Q +            G APV   
Sbjct: 34  ELALALRHAGKKVGILDVDLCGPSIPRMLGAQGRAVHQCDR-----------GWAPVFLD 82

Query: 114 PEEQLALLGVIVLLIVP 130
            E+ ++L+ V  LL  P
Sbjct: 83  REQSISLMSVGFLLEKP 99


>gi|126273519 exonuclease GOR [Homo sapiens]
          Length = 675

 Score = 28.5 bits (62), Expect = 4.7
 Identities = 21/71 (29%), Positives = 28/71 (39%), Gaps = 11/71 (15%)

Query: 156 QVAEETHAEELQKHHSGYSGWPGTPGGD----------FLPRHKEGSVFASQRLPETAAP 205
           +VAEE  A E  +H  G     G P G           F P + E    A +  PE +  
Sbjct: 19  KVAEEA-ALEASRHLGGEQSQAGAPEGSKMLRATAPCWFRPGYPEAKKVAKEAAPEASRH 77

Query: 206 AAAQDAPTLAP 216
             A+ +P  AP
Sbjct: 78  LGAEQSPAGAP 88


>gi|239754512 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 556

 Score = 28.1 bits (61), Expect = 6.1
 Identities = 21/72 (29%), Positives = 33/72 (45%), Gaps = 7/72 (9%)

Query: 89  LPQGEAQQAANLAPLPLGAAPVVTHPEEQLAL--LGVIVLLIVPIGHEVVVQSPIGHLWV 146
           LP GE +Q+++L P    A P   H E++L L   G++  +  P+        P+G  W 
Sbjct: 27  LPLGEVEQSSHLVP----AVPGEVHVEQKLFLQFQGLVFCIGAPLFPSGARMKPVG-CWT 81

Query: 147 EGAIEVALTQVA 158
              I+  L   A
Sbjct: 82  LTGIDGGLVSAA 93


>gi|40316918 NOL1/NOP2/Sun domain family 4 protein [Homo sapiens]
          Length = 384

 Score = 28.1 bits (61), Expect = 6.1
 Identities = 19/57 (33%), Positives = 27/57 (47%), Gaps = 4/57 (7%)

Query: 114 PEEQLALLGVIVLLIVPIGHEVVVQSPIGHLW----VEGAIEVALTQVAEETHAEEL 166
           P  Q+ LL   +L   P GH V     + HL     V+GAIE+   Q + +   E+L
Sbjct: 285 PVLQVQLLAAGLLATKPGGHVVYSTCSLSHLQNEYVVQGAIELLANQYSIQVQVEDL 341


>gi|32129214 neuronal calcium-binding protein 2 [Homo sapiens]
          Length = 386

 Score = 28.1 bits (61), Expect = 6.1
 Identities = 16/61 (26%), Positives = 26/61 (42%), Gaps = 1/61 (1%)

Query: 146 VEGAIEVALTQVAEETHAEELQKHHSGYSGWPGTPGGDFLPRHKEGSVFASQRLPETAAP 205
           VE A+E A+ +   +     ++  HS    W G+P     P HK  ++   + LP     
Sbjct: 184 VESAVE-AIEEQTSQLRQNHIKPSHSAAQTWCGSPTPASAPNHKLMAMEQGKTLPSATED 242

Query: 206 A 206
           A
Sbjct: 243 A 243


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.317    0.136    0.406 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,640,457
Number of Sequences: 37866
Number of extensions: 477724
Number of successful extensions: 1542
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 31
Number of HSP's that attempted gapping in prelim test: 1531
Number of HSP's gapped (non-prelim): 43
length of query: 219
length of database: 18,247,518
effective HSP length: 98
effective length of query: 121
effective length of database: 14,536,650
effective search space: 1758934650
effective search space used: 1758934650
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 60 (27.7 bits)

Search results were obtained with NCBI BLAST and RefSeq entries.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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